SNRNP200

General Information

Gene Name       : SNRNP200
Gene ID             : ENSG00000144028.14
Essential Gene : Yes

Functions

Localization(RBPImage: SNRNP200)

Domains (AlphaFold: SNRNP200)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNRNP200ENSG00000144028.1469.85106.9088.38ENCSR000AEF
HepG2SNRNP200ENSG00000144028.14264.76173.72219.24ENCSR985KAT
K562SNRNP200ENSG00000144028.14161.90155.62158.76ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 4212ENCSR789YZZSNRNP200HepG2ReleasedENCAB827DRAENCSR549PMM  
eCLIPeCLIP: 4152ENCSR280JABSNRNP200K562ReleasedENCAB827DRAENCSR089LDS  
knockdown followed by RNA-seq SNRNP200-BGKLV28-K562ENCSR943LIBSNRNP200K562ReleasedENCSR164MUK   shRNAKD% = 63.5,73.3
knockdown followed by RNA-seq SNRNP200-BGHLV26-HepG2ENCSR003LSASNRNP200HepG2ReleasedENCSR104ABF   shRNAKD% = 54.1,66.9






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
SNRNP2004212HepG2ENCSR789YZZENCSR549PMMENCAB827DRAA303-454A1ReleasedENCODE4
SNRNP2004152K562ENCSR280JABENCSR089LDSENCAB827DRAA303-454A1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
SNRNP200ENCAB770ROFA303-453A1Released, ENCODE3BGHLV26-57, Released, ENCODE3BGKLV28-53, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
SNRNP200K562shRNABGKLV13-55,BGKLV13-56BGKLV13-1,BGKLV13-2NotSatisfiedENCODE3
SNRNP200K562shRNAENCSR943LIBENCSR164MUKSNRNP200_BGKLV28-53,SNRNP200_BGKLV28-54non-target_BGKLV28-1,non-target_BGKLV28-263.5,73.3ReleasedENCODE3
SNRNP200HepG2shRNAENCSR003LSAENCSR104ABFSNRNP200_BGHLV26_57,SNRNP200_BGHLV26_58non-target_BGHLV26-1,non-target_BGHLV26-254.1,66.9ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    SNRNP200: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cytoplasm
  • Compartment/Organelle
  • Golgi
  • Cytosolic
  • Nuclear release mitosis












  • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    SNRNP200Product_ID: A303-453A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: SNRNP200-human
    SNRNP200_Secondary_Western.png<br>Caption: Western blot following shRNA against SNRNP200 in K562 and HepG2 whole cell lysate using SNRNP200 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SNRNP200. Lanes 5-8 follow the same pattern, but in HepG2. SNRNP200 protein appears as the green band, Tubulin serves as a control and appears in red.
    K562_Bethyl_A303-453A_1_SNRNP200.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using SNRNP200 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-SNRNP200 antibody (lanes under 'SNRNP200').
    SNRNP200_Secondary_Western.png<br>Caption: Western blot following shRNA against SNRNP200 in K562 and HepG2 whole cell lysate using SNRNP200 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against SNRNP200. Lanes 5-8 follow the same pattern, but in HepG2. SNRNP200 protein appears as the green band, Tubulin serves as a control and appears in red.








    RNA Targets

    • eCLIP assay for SNRNP200 is not avaliable on ENCORE database.



    Proteins bound to RNA

    • SNRNP200 RNA is bound by 46 proteins.  







    eCLIP assay for SNRNP200 is not avaliable on ENCORE database.





    46 proteins are bound to SNRNP200 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr29694049196940520-3'-UTR,intron-Distal4.399274.98857K562TIA1
    chr29694096196941003-3'-UTR,CDS,intron-Distal,intron-Proximal4.761775.35117HepG2PRPF8
    chr29694088296940893-3'-UTR,CDS,intron-Distal3.116413.55392K562YBX3
    chr29694087096940888-3'-UTR,CDS,intron-Distal3.454625.90680HepG2PPIG
    chr29694060996940676-3'-UTR,intron-Distal,intron-Proximal3.9537815.65412K562FMR1
    chr29694062596940678-3'-UTR,intron-Distal,intron-Proximal4.1326813.00200K562FXR2
    chr29694061996940738-3'-UTR,intron-Distal,intron-Proximal4.2139917.13570K562PABPC4
    chr29694072096940766-3'-UTR,CDS,intron-Distal,intron-Proximal6.0394436.54011HepG2SUB1
    chr29694055896940714-3'-UTR,intron-Distal,intron-Proximal3.4125111.71842HepG2UPF1
    chr29694060496940625-3'-UTR,intron-Distal3.493416.21565K562FXR2
    chr29694101296941087-3'-UTR,CDS,intron-Distal,intron-Proximal3.283276.97440HepG2PABPN1
    chr29694062896940700-3'-UTR,intron-Distal,intron-Proximal3.2279920.10439HepG2DDX55
    chr29694063896940731-3'-UTR,intron-Distal,intron-Proximal4.1863945.52773K562PUM2
    chr29694060696940700-3'-UTR,intron-Distal,intron-Proximal5.29926400.00000HepG2SUB1
    chr29694054696940619-3'-UTR,intron-Distal3.333938.78304K562PABPC4
    chr29694052096940527-3'-UTR,intron-Distal4.264614.23094K562TIA1
    chr29694057096940606-3'-UTR,intron-Distal4.4573212.12942HepG2SUB1
    chr29694058696940685-3'-UTR,intron-Distal,intron-Proximal3.382469.99435K562DDX6
    chr29694049196940563-3'-UTR,intron-Distal3.980473.34382K562APOBEC3C
    chr29694053496940607-3'-UTR,intron-Distal3.845748.56349HepG2LARP4
    chr29694070096940720-3'-UTR,intron-Distal,intron-Proximal5.1205919.13514HepG2SUB1
    chr29695092096950979-5'-UTR,CDS,intron-Distal3.9843413.95550K562FMR1
    chr29695021896950240-5'-UTR,CDS,intron-Distal3.512498.33510HepG2G3BP1
    chr29695089196950981-5'-UTR,CDS,intron-Distal,intron-Proximal3.5789914.03000HepG2PPIG
    chr29697113096971210-5'-UTR,CDS,intron-Distal5.858185.78809K562GEMIN5
    chr29695024096950304-5'-UTR,CDS,intron-Distal,intron-Proximal4.5476417.72159HepG2G3BP1
    chr29695024396950274-5'-UTR,CDS,intron-Distal,intron-Proximal3.200546.81934HepG2GRWD1
    chr29695094696951007-5'-UTR,CDS,intron-Distal3.789839.03323K562RBM15
    chr29695103396951079-5'-UTR,CDS,intron-Distal,intron-Proximal3.2414813.17386HepG2BUD13
    chr29695095996951011-5'-UTR,CDS,intron-Distal3.1270815.14110HepG2G3BP1
    chr29695092096950951-5'-UTR,CDS,intron-Distal3.563465.10345K562METAP2
    chr29697115096971221-5'-UTR,CDS,intron-Distal6.6757634.82908K562FXR2
    chr29697117196971205-5'-UTR,CDS,intron-Distal3.157636.38443HepG2BCLAF1
    chr29695100496951046-5'-UTR,CDS,intron-Distal4.5511614.08950K562FMR1
    chr29695095496950991-5'-UTR,CDS,intron-Distal3.701605.46673HepG2FXR2
    chr29697115096971246-5'-UTR,CDS,intron-Distal3.886079.74473HepG2UCHL5
    chr29697113496971248-5'-UTR,CDS,intron-Distal3.1670236.84643K562ZNF622
    chr29697121796971271-5'-UTR,intron-Distal,intron-Proximal6.1540024.28532K562FMR1
    chr29697123396971276-5'-UTR,intron-Distal,intron-Proximal4.134779.06301K562DDX3X
    chr29695024896950270-5'-UTR,CDS,intron-Distal,intron-Proximal3.126767.20615HepG2BCLAF1
    chr29695020596950217-5'-UTR,CDS,intron-Distal3.8369215.57797K562YBX3
    chr29695009896950115-5'-UTR,CDS,intron-Distal3.761536.81630K562FMR1
    chr29695087296950928-5'-UTR,CDS,intron-Distal,intron-Proximal5.2462743.44476HepG2PRPF8
    chr29695024396950394-5'-UTR,CDS,intron-Distal,intron-Proximal3.5809221.67809HepG2AQR
    chr29695106796951077-5'-UTR,CDS,intron-Distal3.178514.89942HepG2GRWD1
    chr29697113896971217-5'-UTR,CDS,intron-Distal6.5166932.91313K562FMR1
    chr29695102796951049-5'-UTR,CDS,intron-Distal3.191186.28230HepG2PPIG
    chr29695095196951003-5'-UTR,CDS,intron-Distal4.347708.06387K562METAP2
    chr29695019096950218-5'-UTR,CDS,intron-Distal3.550139.82789HepG2G3BP1
    chr29695009596950187-5'-UTR,CDS,intron-Distal,intron-Proximal3.0623113.73175HepG2PPIG
    chr29695091696950929-5'-UTR,CDS,intron-Distal,intron-Proximal3.964683.76295K562LIN28B
    chr29697122396971271-5'-UTR,intron-Distal,intron-Proximal7.0918121.78678K562FXR2
    chr29695011096950130-5'-UTR,CDS,intron-Distal3.069334.74027K562YBX3
    chr29695091996950959-5'-UTR,CDS,intron-Distal3.5800916.20607HepG2G3BP1
    chr29695009896950129-5'-UTR,CDS,intron-Distal3.184965.03652K562METAP2
    chr29695100796951045-5'-UTR,CDS,intron-Distal4.878834.82934K562RBM15
    chr29695099496951037-5'-UTR,CDS,intron-Distal4.9673110.56600HepG2FXR2
    chr29695017596950205-5'-UTR,CDS,intron-Distal4.3005817.09668K562YBX3
    chr29695091896950929-5'-UTR,CDS,intron-Distal3.150175.89279HepG2FXR2
    chr29695092496950974-5'-UTR,CDS,intron-Distal3.7050212.20507K562FXR2
    chr29697116196971233-5'-UTR,CDS,intron-Distal4.1303324.08145K562DDX3X
    chr29695014496950190-5'-UTR,CDS,intron-Distal3.7969613.80925HepG2G3BP1
    chr29695088896950920-5'-UTR,CDS,intron-Distal,intron-Proximal3.481967.93092K562DDX24
    chr29695100996951043-5'-UTR,CDS,intron-Distal3.613846.15355K562FXR2
    chr29697114196971281-5'-UTR,CDS,intron-Distal,intron-Proximal4.5567925.04443HepG2DDX3X
    chr29697114096971251-5'-UTR,CDS,intron-Distal4.0206425.94970K562UCHL5
    chr29695092096950946-5'-UTR,CDS,intron-Distal3.504594.46749K562RBM15
    chr29694967996949732-5'-UTR,CDS,intron-Distal5.8569711.05395K562METAP2
    chr29695022796950316-5'-UTR,CDS,intron-Distal,intron-Proximal3.2546414.03766HepG2FXR2
    chr29695219696952223-CDS,intron-Distal,intron-Proximal3.741556.12687HepG2RPS3
    chr29695905396959061-CDS,intron-Distal,intron-Proximal4.8596323.44913K562FXR2
    chr29694358496943686-CDS,intron-Distal3.089387.45560HepG2PABPN1
    chr29695204996952072-CDS,intron-Distal4.012856.84754HepG2GRWD1
    chr29696889696968959-CDS,intron-Distal,intron-Proximal5.5288025.94374K562FMR1
    chr29696740896967432-CDS,intron-Distal4.6033510.01989K562UCHL5
    chr29696462496964641-CDS,intron-Distal6.2129444.76864K562FMR1
    chr29694358096943650-CDS,intron-Distal3.126943.34573K562IGF2BP2
    chr29696890996968937-CDS,intron-Distal3.143339.97208HepG2GRWD1
    chr29696733896967371-CDS,intron-Distal4.4639913.15825K562FXR2
    chr29694398296944018-CDS,intron-Distal3.058387.67762HepG2G3BP1
    chr29697053496970571-CDS,intron-Distal5.0949121.08410K562FXR2
    chr29695498096955007-CDS,intron-Distal3.2535810.12957K562YBX3
    chr29696325496963273-CDS,intron-Distal3.602647.39309HepG2G3BP1
    chr29695612096956196-CDS,intron-Distal3.8431512.50911K562IGF2BP1
    chr29696337596963384-CDS,intron-Distal4.197408.03104HepG2G3BP1
    chr29694761096947662-CDS,intron-Distal,intron-Proximal4.582485.03717HepG2PABPN1
    chr29696744496967454-CDS,intron-Distal4.720689.63229K562FMR1
    chr29695880196958833-CDS,intron-Distal4.7407111.27933K562FXR1
    chr29696506696965116-CDS,intron-Distal,intron-Proximal3.5412931.46183K562UCHL5
    chr29695511196955118-CDS,intron-Distal,intron-Proximal4.866185.42455HepG2EIF3H
    chr29695648696956548-CDS,intron-Distal3.003594.84578K562FXR1
    chr29696321196963228-CDS,intron-Distal4.154285.20093K562DDX24
    chr29695508996955117-CDS,intron-Distal4.1392911.37034K562FXR2
    chr29695502596955090-CDS,intron-Distal3.3377717.93539K562YBX3
    chr29696455296964562-CDS,intron-Distal,intron-Proximal3.986123.18004K562FXR1
    chr29696228596962300-CDS,intron-Distal3.877266.42089K562FXR2
    chr29696458596964646-CDS,intron-Distal3.2635121.19188K562ZNF622
    chr29696730096967393-CDS,intron-Distal3.5699616.61197HepG2BCLAF1
    chr29696319896963232-CDS,intron-Distal6.3964415.10329K562FXR2
    chr29695279196952816-CDS,intron-Distal3.864147.63447K562FMR1
    chr29696889896968950-CDS,intron-Distal3.485926.18673HepG2ZNF800
    chr29694327796943342-CDS,intron-Distal4.265899.03327HepG2PABPN1
    chr29696455296964560-CDS,intron-Distal,intron-Proximal4.992846.91320K562FXR2
    chr29695205296952077-CDS,intron-Distal3.233357.30556K562YBX3
    chr29696404496964076-CDS,intron-Distal4.0595112.57441K562LIN28B
    chr29695251196952541-CDS,intron-Distal5.4658011.95743HepG2G3BP1
    chr29696441696964440-CDS,intron-Distal4.432548.53601K562FMR1
    chr29696457596964604-CDS,intron-Distal5.0147814.08950K562FMR1
    chr29695569496955734-CDS,intron-Distal5.2117820.07612K562FXR2
    chr29695622696956252-CDS,intron-Distal3.3230411.21783K562FMR1
    chr29696338496963441-CDS,intron-Distal3.7355312.12746HepG2G3BP1
    chr29696673596966766-CDS,intron-Distal,intron-Proximal4.2129511.62390K562FXR2
    chr29696119396961255-CDS,intron-Distal,intron-Proximal4.0275610.32997HepG2PRPF8
    chr29697047296970511-CDS,intron-Distal3.450088.50585HepG2GRWD1
    chr29695618296956253-CDS,intron-Distal,intron-Proximal3.072578.12978HepG2LIN28B
    chr29696468796964704-CDS,intron-Distal3.3674711.56154K562UCHL5
    chr29695030196950357-CDS,intron-Distal,intron-Proximal4.3601423.05595K562AQR
    chr29694463996944651-CDS,intron-Distal3.5977111.30069K562YBX3
    chr29696890096968943-CDS,intron-Distal3.2646313.58215K562UCHL5
    chr29695440096954421-CDS,intron-Distal,intron-Proximal6.1225415.79169K562FMR1
    chr29694397996944017-CDS,intron-Distal3.429585.50142HepG2ZNF800
    chr29695243796952477-CDS,intron-Distal4.6764014.32964K562FXR2
    chr29696310496963152-CDS,intron-Distal3.611278.43476K562RPS3
    chr29696267196962712-CDS,intron-Distal4.6864416.07454K562FXR2
    chr29696459096964611-CDS,intron-Distal4.2402611.31641K562PUM1
    chr29694360696943637-CDS,intron-Distal4.8810811.58552K562FXR2
    chr29694935496949374-CDS,intron-Distal4.4348518.26369K562YBX3
    chr29696325596963274-CDS,intron-Distal3.123513.09090K562GRWD1
    chr29695323396953294-CDS,intron-Distal4.0028615.49499HepG2G3BP1
    chr29695615496956178-CDS,intron-Distal3.194253.18818K562FXR1
    chr29695254496952602-CDS,intron-Distal3.566454.53300K562LIN28B
    chr29695650096956548-CDS,intron-Distal3.476905.52041HepG2FXR2
    chr29695030996950354-CDS,intron-Distal,intron-Proximal3.251115.17815K562RBM15
    chr29694456896944613-CDS,intron-Distal4.0614312.31808K562FMR1
    chr29696318396963233-CDS,intron-Distal3.063028.54347HepG2GRWD1
    chr29696439696964441-CDS,intron-Distal,intron-Proximal4.6484910.17741K562PUM1
    chr29695561096955659-CDS,intron-Distal,intron-Proximal4.6361519.96726K562FXR2
    chr29697044896970484-CDS,intron-Distal3.097269.21267K562UCHL5
    chr29696512296965165-CDS,intron-Distal3.375359.66746HepG2FXR2
    chr29696268796962736-CDS,intron-Distal3.8819315.87002HepG2G3BP1
    chr29695443496954484-CDS,intron-Distal3.546349.54031K562YBX3
    chr29696279496962805-CDS,intron-Distal3.820698.29368HepG2G3BP1
    chr29694520896945266-CDS,intron-Distal4.5457415.41331K562FXR2
    chr29696509996965166-CDS,intron-Distal,intron-Proximal3.2985124.21045HepG2BCLAF1
    chr29694927396949294-CDS,intron-Distal3.099063.84837K562GRWD1
    chr29695213896952155-CDS,intron-Distal3.514953.37449K562FXR1
    chr29694263096942647-CDS,intron-Distal,intron-Proximal4.190549.38298HepG2PRPF8
    chr29696411596964144-CDS,intron-Distal4.200547.49899HepG2PPIG
    chr29695361996953649-CDS,intron-Distal3.925813.18236K562FXR1
    chr29696890096968968-CDS,intron-Distal3.1962310.00512K562GRWD1
    chr29695642196956433-CDS,intron-Distal,intron-Proximal3.433667.40596HepG2G3BP1
    chr29695642196956432-CDS,intron-Distal,intron-Proximal3.8366811.92340K562FMR1
    chr29695285596952889-CDS,intron-Distal3.266374.68274HepG2YBX3
    chr29696455296964568-CDS,intron-Distal,intron-Proximal3.3390012.59452K562ZNF622
    chr29695242596952505-CDS,intron-Distal,intron-Proximal3.069298.57579K562METAP2
    chr29696457496964673-CDS,intron-Distal5.0619912.59628K562FXR1
    chr29696506896965120-CDS,intron-Distal4.8844731.84327K562FXR2
    chr29695242796952478-CDS,intron-Distal3.426268.80585K562FMR1
    chr29696464696964672-CDS,intron-Distal5.9095810.22210K562FXR2
    chr29695510096955157-CDS,intron-Distal,intron-Proximal4.4932011.17285K562SF3B4
    chr29695323896953294-CDS,intron-Distal4.573804.29957K562FXR1
    chr29696313196963183-CDS,intron-Distal3.306746.90893HepG2GRWD1
    chr29695643296956475-CDS,intron-Distal4.7117216.95418K562FMR1
    chr29695256496952575-CDS,intron-Distal3.796126.42089K562FXR2
    chr29696132096961380-CDS,intron-Distal3.3154013.43764HepG2G3BP1
    chr29696889696968947-CDS,intron-Distal,intron-Proximal3.6252323.07727K562ZNF622
    chr29696457096964590-CDS,intron-Distal5.381569.24431K562PUM1
    chr29695285396952888-CDS,intron-Distal3.261775.59556K562FMR1
    chr29696344196963458-CDS,intron-Distal3.084156.76180HepG2G3BP1
    chr29694294896942978-CDS,intron-Distal3.388775.03432K562GRWD1
    chr29695209496952180-CDS,intron-Distal4.0830920.59193HepG2G3BP1
    chr29695255696952584-CDS,intron-Distal3.563698.22717K562FMR1
    chr29695318296953239-CDS,intron-Distal3.0185018.65827HepG2PPIG
    chr29694454696944551-CDS,intron-Distal,intron-Proximal3.288779.83233K562YBX3
    chr29697057596970615-CDS,intron-Distal,intron-Proximal4.285724.27476HepG2AQR
    chr29694424696944286-CDS,intron-Distal,intron-Proximal4.162806.23016HepG2PRPF8
    chr29696461596964649-CDS,intron-Distal3.179859.85276HepG2GRWD1
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    chr29696407696964103-CDS,intron-Distal4.5038412.06799K562LIN28B
    chr29695905396959069-CDS,intron-Distal,intron-Proximal4.8967612.94488K562FXR1
    chr29695761796957630-CDS,intron-Distal3.297965.73981HepG2GRWD1
    chr29696730396967347-CDS,intron-Distal4.182833.36793K562FXR1
    chr29695205396952066-CDS,intron-Distal3.408983.80834K562METAP2
    chr29696402196964035-CDS,intron-Distal,intron-Proximal3.778839.30437K562FMR1
    chr29696322396963234-CDS,intron-Distal4.3467818.50694K562LIN28B
    chr29695617896956232-CDS,intron-Distal3.248329.39224K562YBX3
    chr29696506596965181-CDS,intron-Distal,intron-Proximal3.8642512.43708HepG2AQR
    chr29696515496965165-CDS,intron-Distal3.695388.59358HepG2GRWD1
    chr29695219996952220-CDS,intron-Distal4.7605812.60286K562FXR2
    chr29694454696944550-CDS,intron-Distal,intron-Proximal3.513925.73936K562FMR1
    chr29695750796957548-CDS,intron-Distal3.886017.55042HepG2PPIG
    chr29696469896964702-CDS,intron-Distal3.861285.98815HepG2G3BP1
    chr29696410796964166-CDS,intron-Distal,intron-Proximal3.622017.29897K562DDX24
    chr29696319596963231-CDS,intron-Distal3.054033.17668K562METAP2
    chr29696133696961370-CDS,intron-Distal3.9528010.66611K562FMR1
    chr29695361896953654-CDS,intron-Distal3.9768311.06479K562FXR2
    chr29695879196958834-CDS,intron-Distal,intron-Proximal3.429584.30206HepG2ZNF800
    chr29694893796949011-CDS,intron-Distal,intron-Proximal4.082487.27033HepG2PABPN1
    chr29696511096965164-CDS,intron-Distal3.0036814.90413K562PUM1
    chr29695284596952898-CDS,intron-Distal4.6521216.04649HepG2FXR2
    chr29694927396949285-CDS,intron-Distal3.534256.81630K562FMR1
    chr29695317696953227-CDS,intron-Distal,intron-Proximal4.0748611.89211HepG2FXR2
    chr29695715996957194-CDS,intron-Distal4.249047.93716K562FXR2
    chr29695204896952076-CDS,intron-Distal,intron-Proximal3.231939.16534HepG2G3BP1
    chr29695317696953236-CDS,intron-Distal,intron-Proximal3.6254926.75900K562UCHL5
    chr29695621596956252-CDS,intron-Distal3.8378610.14528HepG2PPIG
    chr29695255296952594-CDS,intron-Distal4.098745.92795K562METAP2
    chr29695029396950330-CDS,intron-Distal,intron-Proximal3.481967.93092K562DDX24
    chr29695279396952856-CDS,intron-Distal4.149216.80398K562FXR1
    chr29696897996969033-CDS,intron-Distal3.586698.67013K562DDX24
    chr29696134096961359-CDS,intron-Distal3.534087.05348K562FXR2
    chr29695317496953242-CDS,intron-Distal,intron-Proximal3.3618510.99555HepG2ZNF800
    chr29696227396962307-CDS,intron-Distal,intron-Proximal4.7376814.08950K562FMR1
    chr29696728896967347-CDS,intron-Distal3.922168.94439K562LIN28B
    chr29695027796950347-CDS,intron-Distal,intron-Proximal3.7772020.37917HepG2PRPF8
    chr29695915196959176-CDS,intron-Distal4.2698912.57266K562FXR2
    chr29697046496970522-CDS,intron-Distal4.1271814.09684K562FXR2
    chr29696507096965099-CDS,intron-Distal3.9022715.57800HepG2BCLAF1
    chr29695621296956252-CDS,intron-Distal5.6914023.28394K562FXR2
    chr29696238696962429-CDS,intron-Distal4.155305.84717K562PUM1
    chr29695221196952221-CDS,intron-Distal3.626907.94246HepG2G3BP1
    chr29695623296956250-CDS,intron-Distal3.149624.91034K562YBX3
    chr29695753296957549-CDS,intron-Distal4.7629411.30164K562FMR1
    chr29696728396967385-CDS,intron-Distal4.4324620.56668HepG2G3BP1
    chr29694397496943993-CDS,intron-Distal,intron-Proximal3.155484.29438K562FXR2
    chr29696402296964065-CDS,intron-Distal3.237569.50920K562UCHL5
    chr29696337396963448-CDS,intron-Distal,intron-Proximal3.1067912.19987HepG2EIF3H
    chr29695031596950320-CDS,intron-Distal,intron-Proximal5.239197.12197K562FXR2
    chr29695760796957697-CDS,intron-Distal,intron-Proximal3.174068.31472K562SF3B4
    chr29696337396963437-CDS,intron-Distal,intron-Proximal3.8038916.47033K562DDX24
    chr29695911596959150-CDS,intron-Distal3.9662110.23976K562FMR1
    chr29695905396959081-CDS,intron-Distal,intron-Proximal3.396996.00923HepG2FXR2
    chr29694442796944448-CDS,intron-Distal,intron-Proximal3.262596.63722K562FMR1
    chr29696239796962428-CDS,intron-Distal3.175627.66537HepG2GRWD1
    chr29695882596958834-CDS,intron-Distal,intron-Proximal3.632989.67963K562FMR1
    chr29695760596957640-CDS,intron-Distal,intron-Proximal4.4191910.09214K562DDX24
    chr29695285196952898-CDS,intron-Distal3.2658914.98222HepG2G3BP1
    chr29695325196953295-CDS,intron-Distal4.1361514.11801K562FXR2
    chr29695324796953293-CDS,intron-Distal3.3973510.94761K562FMR1
    chr29695642196956428-CDS,intron-Distal,intron-Proximal3.660544.48452HepG2FXR2
    chr29695280196952846-CDS,intron-Distal3.379148.83000K562UCHL5
    chr29696411696964184-CDS,intron-Distal,intron-Proximal5.6601111.01763HepG2U2AF2
    chr29695912096959162-CDS,intron-Distal4.802115.24248K562FXR1
    chr29695606396956068-CDS,intron-Distal,intron-Proximal3.286166.37586K562FMR1
    chr29696337396963448-CDS,intron-Distal,intron-Proximal3.3255616.87765HepG2PPIG
    chr29694951396949565-CDS,intron-Distal,intron-Proximal3.286014.50321HepG2PRPF8
    chr29695623396956253-CDS,intron-Distal,intron-Proximal3.094794.37507K562DDX24
    chr29695616996956197-CDS,intron-Distal3.225845.44638K562IGF2BP2
    chr29695219096952223-CDS,intron-Distal,intron-Proximal3.579677.28797K562METAP2
    chr29695503396955115-CDS,intron-Distal3.0419315.32308HepG2G3BP1
    chr29696402296964055-CDS,intron-Distal3.611403.21664HepG2UCHL5
    chr29696310896963131-CDS,intron-Distal3.423677.24602HepG2GRWD1
    chr29695249696952519-CDS,intron-Distal3.387936.37586K562FMR1
    chr29696438296964423-CDS,intron-Distal3.2653313.52450K562UCHL5
    chr29697052296970534-CDS,intron-Distal4.6301114.95160K562FXR2
    chr29696435296964372-CDS,intron-Distal3.304815.12345HepG2GRWD1
    chr29696239596962428-CDS,intron-Distal3.142928.67013K562DDX24
    chr29695905396959067-CDS,intron-Distal,intron-Proximal3.624846.87242K562DDX24
    chr29695565396955694-CDS,intron-Distal,intron-Proximal4.3078515.66462K562FMR1
    chr29696897296969024-CDS,intron-Distal3.8938913.82484K562FXR2
    chr29695557896955722-CDS,intron-Distal,intron-Proximal5.0431216.04649HepG2FXR2
    chr29694404896944096-CDS,intron-Distal3.4367312.13739K562YBX3
    chr29696893796969067-CDS,intron-Distal3.4939025.05209HepG2GRWD1
    chr29696402596964039-CDS,intron-Distal3.475134.10184HepG2FXR2
    chr29697113096971161-CDS,intron-Distal4.5260815.14055K562DDX3X
    chr29694942696949450-CDS,intron-Distal3.443905.24964HepG2FXR2
    chr29694360196943651-CDS,intron-Distal4.380374.48916K562FXR1
    chr29696901496969058-CDS,intron-Distal3.412506.00923HepG2FXR2
    chr29695210296952151-CDS,intron-Distal3.8925717.93215K562FXR2
    chr29695642196956442-CDS,intron-Distal,intron-Proximal3.159957.38586HepG2PPIG
    chr29696411496964149-CDS,intron-Distal4.017099.82220HepG2G3BP1
    chr29694903596949068-CDS,intron-Distal3.324157.31060HepG2G3BP1
    chr29695367496953707-CDS,intron-Distal5.2371714.27506K562FMR1
    chr29695906296959097-CDS,intron-Distal3.9970911.72573K562FMR1
    chr29697046796970571-CDS,intron-Distal5.2729228.03342K562FMR1
    chr29696740696967444-CDS,intron-Distal4.9205418.10548K562FMR1
    chr29694529396945362-CDS,intron-Distal,intron-Proximal4.019437.09030K562SF3B4
    chr29696398596964037-CDS,intron-Distal,intron-Proximal4.195078.17589HepG2PRPF8
    chr29696227896962309-CDS,intron-Distal5.439379.74663HepG2PPIG
    chr29695279296952845-CDS,intron-Distal3.9100614.33118HepG2GRWD1
    chr29695879696958833-CDS,intron-Distal3.539868.41354HepG2FXR2
    chr29696905596969067-CDS,intron-Distal3.668017.39639K562ZNF622
    chr29695210596952153-CDS,intron-Distal4.1265318.78115K562FMR1
    chr29696456596964626-CDS,intron-Distal4.1653114.14361HepG2G3BP1
    chr29696138096961396-CDS,intron-Distal3.178596.85038HepG2G3BP1
    chr29695211096952151-CDS,intron-Distal3.715327.11719HepG2RPS3
    chr29696737196967392-CDS,intron-Distal4.399349.41492K562FXR2
    chr29696239896962429-CDS,intron-Distal3.453913.72826K562FXR1
    chr29694292396942951-CDS,intron-Distal3.824216.26935K562DDX24
    chr29695760096957638-CDS,intron-Distal3.616627.97025HepG2BCLAF1
    chr29695478696954849-CDS,intron-Distal3.3477110.78864HepG2PPIG
    chr29694955196949584-CDS,intron-Distal3.529999.89510HepG2G3BP1
    chr29695716196957207-CDS,intron-Distal4.278184.48707K562FXR1
    chr29694344196943495-CDS,intron-Distal,intron-Proximal3.337565.56719K562SF3B4
    chr29694931196949336-CDS,intron-Distal3.114308.77343K562YBX3
    chr29696238796962429-CDS,intron-Distal4.2151114.65287K562FXR2
    chr29695287096952943-CDS,intron-Distal,intron-Proximal3.069205.53463K562SF3B4
    chr29695076996950833-CDS,intron-Distal,intron-Proximal3.988186.37184K562RBM15
    chr29695761396957637-CDS,intron-Distal3.777264.39367K562PUM1
    chr29696267096962709-CDS,intron-Distal,intron-Proximal3.220163.90322HepG2UCHL5
    chr29695608396956120-CDS,intron-Distal3.451983.57974K562IGF2BP1
    chr29695617396956239-CDS,intron-Distal3.0426711.15421K562LIN28B
    chr29696718996967246-intron-Distal,intron-Proximal4.192767.08156K562PRPF8
    chr29695709796957127-intron-Distal,intron-Proximal4.184883.89565K562PRPF8
    chr29696711696967241-intron-Distal,intron-Proximal3.024147.02852K562KHSRP
    chr29694312896943180-intron-Distal,intron-Proximal3.703145.66421K562PRPF8
    chr29694322796943263-intron-Distal,intron-Proximal4.973856.22530K562AQR
    chr29694371396943766-intron-Distal,intron-Proximal3.914713.31322HepG2SF3B4
    chr29696223596962259-intron-Distal,intron-Proximal4.681374.48002K562AQR
    chr29696114596961187-intron-Distal,intron-Proximal4.837876.08021K562PRPF8
    chr29694260396942630-intron-Distal,intron-Proximal4.704039.10443HepG2PRPF8
    chr29694260196942629-intron-Distal,intron-Proximal6.0273112.10660K562AQR
    chr29696880996968849-intron-Distal,intron-Proximal4.284663.49003K562PRPF8
    chr29695198096952047-intron-Distal,intron-Proximal3.937685.85504K562SF3B4
    chr29695087196950894-intron-Distal,intron-Proximal3.8901810.82778K562PRPF8
    chr29696719896967248-intron-Distal,intron-Proximal6.4085615.35700K562AQR
    chr29695549696955535-intron-Distal,intron-Proximal4.566313.11721K562AQR
    chr29695464796954690-intron-Distal,intron-Proximal3.993045.28701K562PRPF8
    chr29697105096971124-intron-Distal4.9252311.65116K562AQR
    chr29695200696952032-intron-Distal,intron-Proximal4.650678.69247K562AQR
    chr29695866396958704-intron-Distal,intron-Proximal3.860594.00320K562AQR
    chr29695196596952047-intron-Distal,intron-Proximal5.653958.88193HepG2EFTUD2
    chr29696110496961113-intron-Distal4.127143.85435K562PRPF8
    chr29695199496952045-intron-Distal,intron-Proximal4.884435.33214K562PRPF8
    chr29694882896948904-intron-Distal,intron-Proximal4.046344.54401K562KHSRP
    chr29695637696956416-intron-Distal,intron-Proximal5.012856.22530K562AQR
    chr29695747096957487-intron-Distal,intron-Proximal4.653074.65563K562AQR
    chr29695237996952413-intron-Distal,intron-Proximal5.111515.68502HepG2PRPF8
    chr29696397696964020-intron-Distal,intron-Proximal5.314047.28294K562AQR
    chr29695081296950871-intron-Distal,intron-Proximal4.1880913.41670K562PRPF8
    chr29695708796957124-intron-Distal,intron-Proximal4.929355.17615K562AQR
    chr29696418496964237-intron-Distal,intron-Proximal3.689976.46902HepG2U2AF2
    chr29694263496942641-intron-Distal,intron-Proximal5.8197910.48996K562AQR
    chr29695330096953346-intron-Distal,intron-Proximal5.180396.40247K562SF3B4
    chr29697108996971128-intron-Distal4.676914.96013K562PRPF8
    chr29696109496961218-intron-Distal,intron-Proximal3.083324.40576K562KHSRP
    chr29694314696943214-intron-Distal,intron-Proximal4.639738.52787K562AQR
    chr29695006396950094-intron-Distal,intron-Proximal4.546525.32906HepG2AQR
    chr29696724896967262-intron-Distal,intron-Proximal3.594189.75075K562AQR
    chr29694346396943508-intron-Distal,intron-Proximal5.582316.71458K562EFTUD2
    chr29695087196950918-intron-Distal,intron-Proximal5.6781833.49012K562AQR
    chr29697006996970138-intron-Distal3.745034.09242HepG2QKI
    chr29695903196959053-intron-Distal,intron-Proximal3.860594.00320K562AQR
    chr29694766596947728-intron-Distal,intron-Proximal4.555595.86025HepG2SF3B4
    chr29697103496971080-intron-Distal3.811763.88924K562PRPF8
    chr29695744796957470-intron-Distal,intron-Proximal5.123635.65342K562AQR
    chr29695083696950881-intron-Distal,intron-Proximal4.724636.57313K562RBM15
    chr29695082996950871-intron-Distal,intron-Proximal3.490188.77060K562AQR
    chr29694975396949802-intron-Distal,intron-Proximal3.691755.93727K562SF3B4
    chr29694473696944803-intron-Distal,intron-Proximal4.421266.10653K562SF3B4
    chr29695900796959031-intron-Distal,intron-Proximal4.188276.48405K562AQR
    chr29696305496963097-intron-Distal,intron-Proximal4.992115.69951K562AQR
    chr29696486796964917-intron-Distal4.301434.58794K562KHSRP
    chr29695203296952048-intron-Distal,intron-Proximal4.353347.15298K562AQR
    chr29695473296954775-intron-Distal,intron-Proximal3.435873.93669K562AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for SNRNP200 is not avaliable on ENCORE database.



    Diffrential Expression

    • 3,172 differentially expressed genes after Knockdown/Knockout SNRNP200 protein.  





    • 87 RBPs can affect the levels of SNRNP200.  







    3,172 differentially expressed genes after Knockdown/Knockout SNRNP200 protein :

    Only display 100 entries as example. Please click "View All" button to see all 3,172 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    DBNDD1ENSG00000003249.9863.31530266.698801.694607.979105.51190HepG2SNRNP200
    PLXND1ENSG00000004399.82172.466401144.082300.925003.117001.70520HepG2SNRNP200
    KDM1AENSG00000004487.111807.434303470.65660-0.941303.256001.81120HepG2SNRNP200
    DVL2ENSG00000004975.7452.78570198.350501.190703.677802.11870HepG2SNRNP200
    POLR2JENSG00000005075.111199.19980469.149201.353905.762903.68970HepG2SNRNP200
    RHBDD2ENSG00000005486.12383.35360197.822900.954402.699301.40870HepG2SNRNP200
    PDK2ENSG00000005882.7683.19380350.715300.961903.080001.67970HepG2SNRNP200
    ITGA3ENSG00000005884.1393.1827030.793901.597303.575402.04590HepG2SNRNP200
    CRLF1ENSG00000006016.63339.938401171.309301.511607.200404.87140HepG2SNRNP200
    CX3CL1ENSG00000006210.62468.61920928.027001.411406.316604.13550HepG2SNRNP200
    TNFRSF12AENSG00000006327.9407.16280107.536001.920704.001502.35420HepG2SNRNP200
    TEAD3ENSG00000007866.14974.11820493.764000.980203.255201.81100HepG2SNRNP200
    CELSR3ENSG00000008300.10860.64330446.789600.945702.974501.60420HepG2SNRNP200
    IL32ENSG00000008517.123425.353601610.190101.088904.199402.50770HepG2SNRNP200
    RPS20ENSG00000008988.55809.7572010652.80830-0.874702.755401.44720HepG2SNRNP200
    MASP2ENSG00000009724.12284.78110129.967201.131603.299201.83920HepG2SNRNP200
    MLXIPLENSG00000009950.113906.549002002.075500.964303.431201.93300HepG2SNRNP200
    GIPRENSG00000010310.462.9223018.267701.784203.379501.89440HepG2SNRNP200
    CLCN6ENSG00000011021.171764.21470940.485400.907402.959101.59290HepG2SNRNP200
    SYT7ENSG00000011347.5389.12000199.369500.964702.727401.42670HepG2SNRNP200
    WIZENSG00000011451.13668.87810236.957601.497006.166404.03480HepG2SNRNP200
    NR1H4ENSG00000012504.9373.99490938.39230-1.327205.251503.30200HepG2SNRNP200
    MVPENSG00000013364.14709.53390293.352401.274103.613602.06960HepG2SNRNP200
    GPRC5AENSG00000013588.5116.1624036.530401.668904.275902.56900HepG2SNRNP200
    ZC3H3ENSG00000014164.6313.9773098.650801.670206.214504.07100HepG2SNRNP200
    CAPN1ENSG00000014216.111423.59490745.892000.932402.695001.40780HepG2SNRNP200
    NPC1L1ENSG00000015520.101028.18780420.679601.289205.053103.14450HepG2SNRNP200
    XYLT2ENSG00000015532.5658.04550344.499100.933602.670301.39050HepG2SNRNP200
    SRCIN1ENSG00000017373.11506.37960125.272402.015109.611106.88010HepG2SNRNP200
    SLC38A5ENSG00000017483.101060.60400458.245801.210604.678702.87220HepG2SNRNP200
    CD74ENSG00000019582.103286.23170903.488401.8628010.518807.72500HepG2SNRNP200
    MRE11AENSG00000020922.8399.22210771.35870-0.950203.024401.63960HepG2SNRNP200
    PLEKHB1ENSG00000021300.91552.44240757.801701.034503.699102.13240HepG2SNRNP200
    CPS1ENSG00000021826.10729.176101376.75570-0.916902.884701.53940HepG2SNRNP200
    EHD2ENSG00000024422.7109.9889029.751801.886205.011703.11360HepG2SNRNP200
    DEPDC1ENSG00000024526.12412.45350902.33180-1.129403.935702.30820HepG2SNRNP200
    TOMM34ENSG00000025772.71341.21640719.726400.897902.919601.56620HepG2SNRNP200
    B4GALT7ENSG00000027847.9256.90210111.177001.208303.586002.05260HepG2SNRNP200
    HMGB3ENSG00000029993.10582.892701549.01930-1.410106.166404.03480HepG2SNRNP200
    GAB2ENSG00000033327.8623.46960326.204400.934402.856801.52200HepG2SNRNP200
    ATP6V0A1ENSG00000033627.101693.07120891.430500.925303.053401.65770HepG2SNRNP200
    TUBG2ENSG00000037042.8741.91990311.595301.251504.702602.89230HepG2SNRNP200
    RPL26L1ENSG00000037241.3187.61940359.05860-0.936402.583401.33230HepG2SNRNP200
    CDH1ENSG00000039068.14770.53680416.972200.885802.748501.44190HepG2SNRNP200
    FAM65AENSG00000039523.131719.38460710.865201.274105.347703.37160HepG2SNRNP200
    SPDL1ENSG00000040275.12318.49990811.03730-1.348505.381803.39120HepG2SNRNP200
    BCAR1ENSG00000050820.121824.68230610.677501.579107.581105.19760HepG2SNRNP200
    PRSS8ENSG00000052344.11386.6653090.820802.089909.556906.83610HepG2SNRNP200
    ANAPC4ENSG00000053900.6292.30200701.41120-1.262804.661602.86030HepG2SNRNP200
    ENTPD2ENSG00000054179.7303.6782082.992801.871407.392105.04220HepG2SNRNP200
    SYNE2ENSG00000054654.11688.839301249.90260-0.859602.649601.37700HepG2SNRNP200
    MRPL43ENSG00000055950.12388.41970203.045300.935702.615901.35540HepG2SNRNP200
    PCGF2ENSG00000056661.91639.51040731.746001.163804.434502.69510HepG2SNRNP200
    PITHD1ENSG00000057757.5242.28020462.95620-0.934202.722401.42490HepG2SNRNP200
    SEC61A1ENSG00000058262.55010.342402761.879500.859202.824301.49900HepG2SNRNP200
    CREB3L3ENSG00000060566.91388.56620750.987300.886602.849401.51710HepG2SNRNP200
    GLTSCR1ENSG00000063169.6196.1109075.691201.373403.101801.69400HepG2SNRNP200
    SPHK2ENSG00000063176.11133.1254050.635101.394502.956101.59170HepG2SNRNP200
    EPN1ENSG00000063245.101612.23540597.140301.432806.356204.16330HepG2SNRNP200
    CTSAENSG00000064601.124656.275002076.157901.165204.610702.82460HepG2SNRNP200
    CNN2ENSG00000064666.101611.60660833.056200.951902.569201.32420HepG2SNRNP200
    BTBD1ENSG00000064726.5720.603901285.91850-0.835502.542001.30400HepG2SNRNP200
    PMS1ENSG00000064933.12591.857201178.93820-0.994203.443901.94390HepG2SNRNP200
    TAF11ENSG00000064995.12361.68100694.69010-0.941702.921501.56720HepG2SNRNP200
    ZC3H15ENSG00000065548.132228.559104317.09940-0.954003.339101.86730HepG2SNRNP200
    PDE4AENSG00000065989.11372.91780170.143201.132003.565602.04000HepG2SNRNP200
    ISOC1ENSG00000066583.7293.21220657.04650-1.164104.135802.45910HepG2SNRNP200
    IARS2ENSG00000067704.81710.262503404.96810-0.993403.574802.04590HepG2SNRNP200
    ROGDIENSG00000067836.8542.16360208.785201.376605.255903.30270HepG2SNRNP200
    SIRT2ENSG00000068903.15334.57290172.240100.957802.685001.40110HepG2SNRNP200
    BCL3ENSG00000069399.8182.2700060.541401.590004.940903.06090HepG2SNRNP200
    FUNDC1ENSG00000069509.5152.25250363.23680-1.254404.271102.56620HepG2SNRNP200
    FSTL3ENSG00000070404.5443.24010140.945101.652903.497601.98660HepG2SNRNP200
    RNF126ENSG00000070423.13526.61130244.804901.105003.620002.07330HepG2SNRNP200
    MNTENSG00000070444.10563.33560253.139401.154003.975502.33380HepG2SNRNP200
    EIF2B3ENSG00000070785.12137.39770307.39860-1.161803.460901.95910HepG2SNRNP200
    TRIP13ENSG00000071539.9178.96100356.98440-0.996202.918401.56540HepG2SNRNP200
    ATP6AP1ENSG00000071553.121664.49470804.335201.049103.736602.15900HepG2SNRNP200
    RDH11ENSG00000072042.81638.463603234.09580-0.981003.398701.90950HepG2SNRNP200
    LPHN1ENSG00000072071.1278.2244019.831601.979704.497802.74120HepG2SNRNP200
    HMMRENSG00000072571.15716.058402001.44910-1.482906.748904.49840HepG2SNRNP200
    EVCENSG00000072840.8718.44980367.425900.967303.051001.65680HepG2SNRNP200
    SCARB1ENSG00000073060.115219.953402379.849901.133104.469602.72380HepG2SNRNP200
    CYP2W1ENSG00000073067.9557.73150178.523101.643404.952803.06980HepG2SNRNP200
    CDHR2ENSG00000074276.6713.98770327.774101.123103.948802.31630HepG2SNRNP200
    MCM6ENSG00000076003.4353.18940725.93920-1.039403.476701.97000HepG2SNRNP200
    PTPN23ENSG00000076201.101152.19190445.229101.371705.743603.67710HepG2SNRNP200
    SPAG5ENSG00000076382.12669.472001460.85080-1.125704.127702.45200HepG2SNRNP200
    CAMSAP3ENSG00000076826.51072.49630408.686901.391805.796303.70950HepG2SNRNP200
    RAP1GAPENSG00000076864.15667.29330287.060501.216904.266502.56250HepG2SNRNP200
    MAP2K7ENSG00000076984.13376.68240132.579101.506404.849402.98810HepG2SNRNP200
    NFKB2ENSG00000077150.13517.83920261.493200.985602.932101.57520HepG2SNRNP200
    IL4RENSG00000077238.91019.52390567.856000.844202.566101.32200HepG2SNRNP200
    LRCH4ENSG00000077454.11495.42050194.171001.351205.026503.12250HepG2SNRNP200
    ARAFENSG00000078061.8554.43710231.744001.258404.538702.77100HepG2SNRNP200
    TP53INP2ENSG00000078804.84719.412601905.422301.308405.768003.69030HepG2SNRNP200
    BPIFB2ENSG00000078898.616664.771407021.746001.246803.745102.16680HepG2SNRNP200
    THOC1ENSG00000079134.7491.911701003.03790-1.027902.952301.58880HepG2SNRNP200
    TNS1ENSG00000079308.124762.796301901.321101.324705.871003.77920HepG2SNRNP200
    REXO1ENSG00000079313.7542.83360226.537201.260704.489602.73850HepG2SNRNP200
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    87 RBPs can affect the gene expression of SNRNP200 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    SNRNP200ENSG00000144028.109325.6922010695.81270-0.197803.555502.88170HepG2ACO1
    SNRNP200ENSG00000144028.107524.0385010745.32430-0.5141016.3379014.68560HepG2AKAP8L
    SNRNP200ENSG00000144028.107299.904709510.99160-0.381703.123302.12670HepG2BCCIP
    SNRNP200ENSG00000144028.106113.462808264.04670-0.434904.062902.99300HepG2BCLAF1
    SNRNP200ENSG00000144028.107114.558409248.03530-0.378404.407803.67270HepG2BOP1
    SNRNP200ENSG00000144028.108115.504309511.66290-0.229002.497901.76210HepG2CALR
    SNRNP200ENSG00000144028.1016804.1147010692.597900.6521039.8894038.05170HepG2CKAP4
    SNRNP200ENSG00000144028.107093.248708490.10350-0.259302.139001.52500HepG2CPSF6
    SNRNP200ENSG00000144028.1010195.6508013064.00790-0.357607.084906.14550HepG2CELF1
    SNRNP200ENSG00000144028.108125.3892010201.29630-0.328203.577502.81450HepG2DDX21
    SNRNP200ENSG00000144028.109229.2872012649.65320-0.454804.673003.87720HepG2DDX3X
    SNRNP200ENSG00000144028.107271.782309351.41620-0.362902.923302.13160HepG2DDX55
    SNRNP200ENSG00000144028.108382.2389010867.35410-0.374602.879902.25090HepG2DDX6
    SNRNP200ENSG00000144028.108531.4783010232.76410-0.262304.779703.93330HepG2DKC1
    SNRNP200ENSG00000144028.106859.200208871.06150-0.371107.252406.15700HepG2DNAJC21
    SNRNP200ENSG00000144028.105567.709308792.84360-0.6592036.0340033.93390HepG2DNAJC2
    SNRNP200ENSG00000144028.108875.9607010450.92980-0.235702.277101.51980HepG2EWSR1
    SNRNP200ENSG00000144028.1011463.573407395.465900.6322012.2837010.68530HepG2FUBP3
    SNRNP200ENSG00000144028.1013129.5491010804.895700.281001.940001.37860HepG2G3BP1
    SNRNP200ENSG00000144028.108891.2337010210.89930-0.199702.993601.98000HepG2HDGF
    SNRNP200ENSG00000144028.107502.012208956.05000-0.255602.453201.84250HepG2HNRNPA1
    SNRNP200ENSG00000144028.1011380.7607012908.85200-0.181802.270301.41590HepG2HNRNPA2B1
    SNRNP200ENSG00000144028.108186.673109961.98850-0.283202.844002.14190HepG2HNRNPC
    SNRNP200ENSG00000144028.1018611.0856010942.792100.7661015.3488013.84290HepG2HNRNPK
    SNRNP200ENSG00000144028.1010629.0148012793.64820-0.267405.745204.80500HepG2HNRNPL
    SNRNP200ENSG00000144028.108913.008609896.12290-0.151002.036301.50660HepG2HNRNPU
    SNRNP200ENSG00000144028.109199.0726010108.55540-0.136002.198801.53690HepG2ILF2
    SNRNP200ENSG00000144028.108296.0083011652.57230-0.490205.318404.41570HepG2MAGOH
    SNRNP200ENSG00000144028.1011618.9757013927.36350-0.261403.205902.38730HepG2NOL12
    SNRNP200ENSG00000144028.108649.232309795.41900-0.179502.497501.68860HepG2PARN
    SNRNP200ENSG00000144028.108937.6296011093.55310-0.311805.953105.11620HepG2PCBP1
    SNRNP200ENSG00000144028.1014138.3281010659.603300.407402.387301.41900HepG2PCBP2
    SNRNP200ENSG00000144028.1013160.1004010380.016900.342307.742206.52920HepG2PRPF4
    SNRNP200ENSG00000144028.108832.726107213.145500.292102.216401.49090HepG2PRPF8
    SNRNP200ENSG00000144028.108646.4976011288.19870-0.3846010.287409.36310HepG2PTBP1
    SNRNP200ENSG00000144028.108183.8430010894.24870-0.4127013.3823012.20290HepG2PUS1
    SNRNP200ENSG00000144028.107853.7463014724.04870-0.9067041.2704039.73300HepG2RBM22
    SNRNP200ENSG00000144028.1011072.4135012562.60360-0.182202.799002.25570HepG2NELFE
    SNRNP200ENSG00000144028.108423.4986011504.66560-0.449706.596805.60610HepG2RPLP0
    SNRNP200ENSG00000144028.107866.0033010809.32390-0.458605.778504.64710HepG2RPS2
    SNRNP200ENSG00000144028.108464.3121011034.15630-0.382504.214602.87450HepG2RPS5
    SNRNP200ENSG00000144028.108820.980807135.223600.305902.094801.40210HepG2RRP9
    SNRNP200ENSG00000144028.1020586.7922013367.962500.622802.010201.43370HepG2SF3A3
    SNRNP200ENSG00000144028.106941.3736010277.30650-0.5662032.1956030.40630HepG2SMN1
    SNRNP200ENSG00000144028.107991.8680010494.92660-0.393102.472301.57080HepG2SMNDC1
    SNRNP200ENSG00000144028.103232.989808765.98060-1.439006.658104.41440HepG2SNRNP200
    SNRNP200ENSG00000144028.1015347.3521016630.16590-0.115801.752801.32600HepG2SRFBP1
    SNRNP200ENSG00000144028.108453.2049010491.70330-0.311707.209306.16840HepG2SRSF7
    SNRNP200ENSG00000144028.108917.485109979.85960-0.162402.358801.84140HepG2SRSF9
    SNRNP200ENSG00000144028.1011247.0343014438.73750-0.3604010.055809.19540HepG2SSB
    SNRNP200ENSG00000144028.106803.320509612.26470-0.498603.420902.07610HepG2SUB1
    SNRNP200ENSG00000144028.106913.793109308.98300-0.429104.108103.30780HepG2SUPV3L1
    SNRNP200ENSG00000144028.1013417.6447011026.184700.283104.643703.94690HepG2TAF15
    SNRNP200ENSG00000144028.104687.025006239.35830-0.412703.738802.59910HepG2TFIP11
    SNRNP200ENSG00000144028.106646.072109615.78730-0.5329011.1504010.26400HepG2TIAL1
    SNRNP200ENSG00000144028.108333.073009701.90140-0.219403.618702.99210HepG2TRIM56
    SNRNP200ENSG00000144028.1010940.3688012989.93130-0.247702.447501.62910HepG2TUFM
    SNRNP200ENSG00000144028.107709.4408010568.78370-0.455105.648004.76710HepG2U2AF1
    SNRNP200ENSG00000144028.103390.549605498.96070-0.6976010.152108.70070HepG2UCHL5
    SNRNP200ENSG00000144028.105766.679408523.63040-0.563704.590103.27810HepG2UPF2
    SNRNP200ENSG00000144028.106658.766009163.67910-0.460705.296904.30180HepG2XRN2
    SNRNP200ENSG00000144028.106663.9738010243.76960-0.6203032.4993030.68430HepG2ZC3H8
    SNRNP200ENSG00000144028.1010960.0585013038.60330-0.250507.078906.30920HepG2ZNF622
    SNRNP200ENSG00000144028.108777.8585010450.09940-0.251602.462401.35530K562AARS
    SNRNP200ENSG00000144028.1017856.5576014124.746900.338108.809607.87270K562AGGF1
    SNRNP200ENSG00000144028.1010993.2738012639.26710-0.201303.475302.39450K562BCLAF1
    SNRNP200ENSG00000144028.1014180.8805016879.92480-0.251402.843701.64820K562CCDC124
    SNRNP200ENSG00000144028.1022916.8746019603.930900.225203.773803.02940K562DDX47
    SNRNP200ENSG00000144028.1016716.1863012295.299500.443005.263403.98250K562EFTUD2
    SNRNP200ENSG00000144028.1011912.0414015912.16110-0.417709.962508.72650K562EIF2S2
    SNRNP200ENSG00000144028.1017113.7996013163.818900.378503.046201.95990K562EIF3D
    SNRNP200ENSG00000144028.1010403.932807833.944200.409208.328806.95440K562EIF3G
    SNRNP200ENSG00000144028.108422.9131010977.84030-0.382204.438903.39890K562EIF4A3
    SNRNP200ENSG00000144028.1010984.5740013875.83150-0.337103.587002.61110K562FIP1L1
    SNRNP200ENSG00000144028.107917.993609928.55200-0.326402.694301.58530K562FKBP4
    SNRNP200ENSG00000144028.1012545.7796010414.050400.268602.737701.31740K562G3BP1
    SNRNP200ENSG00000144028.105529.538008504.08690-0.621005.388204.32590K562G3BP2
    SNRNP200ENSG00000144028.109703.6131012326.93490-0.345203.025901.52900K562GEMIN5
    SNRNP200ENSG00000144028.1012441.3146021203.68370-0.7692020.0839017.93720K562GRSF1
    SNRNP200ENSG00000144028.1019706.5292016027.699100.298003.627702.39310K562HNRNPA1
    SNRNP200ENSG00000144028.109329.3148011432.55750-0.293303.435202.78040K562HNRNPC
    SNRNP200ENSG00000144028.108368.5002011413.22100-0.447704.356903.17210K562HNRNPM
    SNRNP200ENSG00000144028.1011351.6552018812.46900-0.7288014.0690012.33760K562HSPD1
    SNRNP200ENSG00000144028.1018822.1269015597.714800.271002.712001.89620K562KIF1C
    SNRNP200ENSG00000144028.1016284.6242012247.558700.410902.946102.03160K562NAA15
    SNRNP200ENSG00000144028.1014818.6171010184.506000.540909.095307.29160K562PCBP2
    SNRNP200ENSG00000144028.1011042.1541015752.03190-0.512506.888705.49160K562PPIG
    SNRNP200ENSG00000144028.107755.2572010250.72450-0.402505.181403.89270K562PSIP1
    SNRNP200ENSG00000144028.108500.6770011122.37340-0.387803.956003.17520K562PTBP1
    SNRNP200ENSG00000144028.1022646.0447028776.80490-0.345607.071105.51070K562PUM2
    SNRNP200ENSG00000144028.1021376.1203014575.974900.552308.628107.71780K562PUS1
    SNRNP200ENSG00000144028.1019554.9362014201.949600.4613010.643709.50530K562RBM15
    SNRNP200ENSG00000144028.107883.5784010662.17700-0.435605.451904.22530K562RBM22
    SNRNP200ENSG00000144028.1010874.511608838.050700.299103.794302.78760K562SF3B4
    SNRNP200ENSG00000144028.107808.0822012698.83060-0.701703.337501.93790K562SNRNP200
    SNRNP200ENSG00000144028.108646.9621011583.53710-0.421803.948102.71830K562SUPV3L1
    SNRNP200ENSG00000144028.109051.3601012260.21630-0.437804.923003.52430K562UCHL5
    SNRNP200ENSG00000144028.1012619.5553018448.08870-0.5478022.9064021.08750K562UPF1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for SNRNP200 is not available on ENCORE database.





    4 RBPs can affect the splicing of SNRNP200 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SESNRNP200ENSG00000144028.10chr2-969475519694766096945188969452979694893896949133-0.054000.000000.00001excludedK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9694099496941125969409949694108796942641969427230.065000.000820.03230longerK562U2AF2
    A3SSSNRNP200ENSG00000144028.10chr2-9694099496941125969409949694108796942641969427230.105000.003230.06710longerHepG2U2AF2
    A3SSSNRNP200ENSG00000144028.10chr2-9694354496943793969435449694368896943974969440960.101000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9695360096953797969536009695370796954400969545220.064000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9694755196947777969475519694766096948938969491060.163000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9694518896945368969451889694529796947551969477770.265000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9695317696953383969531769695329596953600969537070.061000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9695274396952990969527439695289896953176969533620.087000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9695496496955211969549649695511796955536969557560.066000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9694281896943066969428189694297996943276969434350.084000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9695870996958902969587099695883396959053969592730.122000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9694099496941202969409949694108796942641969427230.124000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9694893896949183969489389694909096949272969494510.113000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9696506696965311969650669696516596966735969669180.059000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9696122596961455969612259696139696962273969624290.107000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9695012296950354969501229695032396950917969511320.118000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9694397496944191969439749694409696944284969444490.173000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9695440096954522969544009695448496954774969548550.074000.000000.00000longerK562AQR
    A3SSSNRNP200ENSG00000144028.10chr2-9694099496941125969409949694108796942641969427230.120000.000020.00111longerHepG2U2AF1
    A3SSSNRNP200ENSG00000144028.10chr2-9694099496941125969409949694108796942641969427230.079000.000490.02556longerK562U2AF1
    RISNRNP200ENSG00000144028.10chr2-969500959695046196950095969503239695041296950461-0.101000.010840.05774excludedK562AQR
    MXESNRNP200ENSG00000144028.10chr2-9694518896945297969475519694766096944546969447369694893896949090-0.099000.001250.023712includedK562U2AF1
    MXESNRNP200ENSG00000144028.10chr2-96945188969452979694755196947660969445469694473696948938969490900.116000.000590.012931includedK562SF3B4

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for SNRNP200 is not avaliable on ENCORE database.