SYNE2

General Information

Gene Name       : SYNE2
Gene ID             : ENSG00000054654.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SYNE2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SYNE2ENSG00000054654.1622.3025.1923.75ENCSR000AEF
HepG2SYNE2ENSG00000054654.1612.869.9711.41ENCSR985KAT
K562SYNE2ENSG00000054654.160.040.050.04ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SYNE2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SYNE2 RNA is bound by 5 proteins.  







eCLIP assay for SYNE2 is not avaliable on ENCORE database.





5 proteins are bound to SYNE2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr146451886864518932+3'-UTR,CDS3.636093.68471HepG2BCLAF1
chr146451847864518586+3'-UTR,CDS3.881365.06180HepG2BCLAF1
chr146453737764537494+3'-UTR,CDS5.260377.05570HepG2BCLAF1
chr146467555264675646+3'-UTR,5'-UTR,CDS3.730903.34184HepG2GRWD1
chr146452021864520366+3'-UTR,CDS4.372827.82199HepG2BCLAF1
chr146447375964473839+5'-UTR,CDS,intron-Proximal4.982177.04013HepG2BCLAF1
chr146448803264488118+5'-UTR,CDS,intron-Proximal3.315895.91405HepG2BCLAF1
chr146448674764486812+5'-UTR,CDS,intron-Proximal4.984025.68196HepG2BCLAF1
chr146449785064497912+5'-UTR,CDS4.491343.06595HepG2BCLAF1
chr146446562664465697+5'-UTR,CDS,intron-Proximal3.580343.87469HepG2BCLAF1
chr146440860964408659+5'-UTR,CDS4.406384.34038HepG2BCLAF1
chr146442827964428339+5'-UTR,CDS4.570615.03746HepG2BCLAF1
chr146445320964453336+5'-UTR,CDS,intron-Proximal3.927553.56019HepG2GRWD1
chr146441667064416725+5'-UTR,CDS,intron-Proximal3.065883.94979HepG2BCLAF1
chr146445321464453338+5'-UTR,CDS,intron-Proximal5.6653011.50624HepG2BCLAF1
chr146442827364428343+5'-UTR,CDS3.692754.41267HepG2PPIG
chr146440846764408509+5'-UTR,CDS,intron-Proximal3.602543.68471HepG2BCLAF1
chr146448431264484460+5'-UTR,CDS,intron-Proximal4.314727.53358HepG2BCLAF1
chr146449188164492003+5'-UTR,CDS4.220396.22576HepG2BCLAF1
chr146446379864463872+5'-UTR,CDS3.715074.46864HepG2BCLAF1
chr146459187164591927+CDS3.593114.09885HepG2BCLAF1
chr146463205864632094+CDS,intron-Distal3.969143.02457HepG2BCLAF1
chr146461287664612939+CDS3.008143.55800HepG2BCLAF1
chr146463397864634025+CDS4.187843.71570HepG2BCLAF1
chr146459308864593132+CDS4.450114.34038HepG2BCLAF1
chr146461051664610569+CDS4.080343.02457HepG2BCLAF1
chr146454728964547351+CDS4.519904.56100HepG2FXR2
chr146432668464326739+intron-Distal5.145066.23953HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SYNE2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SYNE2 is not available on ENCORE database.

  • 111 RBPs can affect the levels of SYNE2.  








The Knockdown/knockout RNA-Seq assay for SYNE2 is not available on ENCORE database.





111 RBPs can affect the gene expression of SYNE2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SYNE2ENSG00000054654.111621.878301080.660400.585705.491304.21430HepG2ABCF1
SYNE2ENSG00000054654.111302.266701072.745400.279602.610902.01730HepG2ACO1
SYNE2ENSG00000054654.111356.118301077.959400.331103.056602.25480HepG2AKAP8L
SYNE2ENSG00000054654.11265.62310556.98180-1.0682010.646609.17850HepG2ASCC1
SYNE2ENSG00000054654.11882.932201106.48140-0.325603.258202.52280HepG2AUH
SYNE2ENSG00000054654.11452.36580921.39250-1.0263010.867508.95500HepG2BCCIP
SYNE2ENSG00000054654.11522.80600800.62560-0.614904.574603.44450HepG2BCLAF1
SYNE2ENSG00000054654.11192.454601115.63070-2.5353071.0574068.93790HepG2BOP1
SYNE2ENSG00000054654.11989.937401256.61810-0.344103.001402.20020HepG2CALR
SYNE2ENSG00000054654.11527.888201072.72150-1.0230011.4451010.27970HepG2CKAP4
SYNE2ENSG00000054654.11508.079201024.19130-1.0114014.3653012.94520HepG2CPSF6
SYNE2ENSG00000054654.11693.202501132.31650-0.707903.527202.37670HepG2YBX3
SYNE2ENSG00000054654.11990.368601277.89870-0.367705.608004.60360HepG2DAZAP1
SYNE2ENSG00000054654.11393.05350644.84070-0.714205.656004.79120HepG2DDX3X
SYNE2ENSG00000054654.11853.338001339.67380-0.650707.897005.82600HepG2DDX47
SYNE2ENSG00000054654.11649.48820905.91620-0.480102.968902.17280HepG2DDX55
SYNE2ENSG00000054654.11602.01420966.46830-0.682905.225803.87350HepG2DDX5
SYNE2ENSG00000054654.11420.36120553.90010-0.398001.889401.36950HepG2DDX6
SYNE2ENSG00000054654.11768.485601072.33400-0.480704.493603.25630HepG2DHX30
SYNE2ENSG00000054654.11657.557601111.77880-0.757708.566307.38480HepG2DNAJC21
SYNE2ENSG00000054654.11668.672201102.06480-0.7208015.2087013.80380HepG2DNAJC2
SYNE2ENSG00000054654.111423.935801078.284700.401003.142102.16410HepG2EEF2
SYNE2ENSG00000054654.11989.92970588.499800.750206.882705.87230HepG2EIF4A3
SYNE2ENSG00000054654.11911.79400572.958400.670204.492703.62730HepG2EIF4B
SYNE2ENSG00000054654.111036.798801260.65870-0.282002.848602.00200HepG2EIF4G1
SYNE2ENSG00000054654.11919.908301270.38350-0.465706.127405.29310HepG2ETF1
SYNE2ENSG00000054654.11628.321001069.97640-0.768004.142402.78240HepG2FASTKD2
SYNE2ENSG00000054654.111617.496101091.215700.567704.571003.59960HepG2FIP1L1
SYNE2ENSG00000054654.11648.24550360.340100.847103.752802.84590HepG2FUBP3
SYNE2ENSG00000054654.111453.44720593.726101.2915022.5892020.82330HepG2FXR1
SYNE2ENSG00000054654.111177.04980584.704901.0093014.0478012.06090HepG2G3BP2
SYNE2ENSG00000054654.11897.606201341.68600-0.579903.553901.77460HepG2GTF2F1
SYNE2ENSG00000054654.11548.338701024.29160-0.901509.243607.59450HepG2HDGF
SYNE2ENSG00000054654.11585.75490837.66130-0.516103.071001.47880HepG2HNRNPD
SYNE2ENSG00000054654.11562.17020741.87220-0.400202.181201.53900HepG2HNRNPF
SYNE2ENSG00000054654.11766.31440557.670800.458403.224702.47150HepG2HNRNPK
SYNE2ENSG00000054654.11863.004501164.09150-0.431806.773405.76240HepG2HNRNPL
SYNE2ENSG00000054654.11651.214201107.92060-0.766708.561207.51930HepG2HNRNPLL
SYNE2ENSG00000054654.111521.831601240.274300.295002.902002.28230HepG2HNRNPU
SYNE2ENSG00000054654.11570.60740730.52330-0.356402.678001.96550HepG2IGF2BP1
SYNE2ENSG00000054654.11423.35630559.87650-0.403202.211601.59950HepG2IGF2BP2
SYNE2ENSG00000054654.111403.92490525.385601.417908.166606.55030HepG2IGF2BP3
SYNE2ENSG00000054654.11865.112901266.89330-0.5503011.6836010.29470HepG2ILF2
SYNE2ENSG00000054654.11637.42110942.73870-0.564603.244601.79840HepG2ILF3
SYNE2ENSG00000054654.11631.38930921.14640-0.544903.709502.29810HepG2KHDRBS1
SYNE2ENSG00000054654.11980.76200563.124200.800405.234103.81670HepG2KHSRP
SYNE2ENSG00000054654.11819.518501078.25300-0.395803.040401.31310HepG2CCAR2
SYNE2ENSG00000054654.11647.36920980.75390-0.599305.330303.92700HepG2KIF1C
SYNE2ENSG00000054654.111324.779802326.28730-0.812307.296805.93420HepG2LARP4
SYNE2ENSG00000054654.11863.464301253.14250-0.537305.269103.59040HepG2LIN28B
SYNE2ENSG00000054654.111111.90200593.933100.9046010.802209.53020HepG2MAGOH
SYNE2ENSG00000054654.11767.54120597.264700.361801.849001.32750HepG2MATR3
SYNE2ENSG00000054654.111161.16610883.194300.394703.518002.60640HepG2MSI2
SYNE2ENSG00000054654.111045.76750611.339700.774407.812206.77320HepG2NCBP2
SYNE2ENSG00000054654.111206.60210831.846800.536502.418201.40290HepG2NONO
SYNE2ENSG00000054654.11610.56010982.42020-0.686207.171506.00420HepG2NSUN2
SYNE2ENSG00000054654.11496.21720883.80640-0.832805.261104.00800HepG2PABPC1
SYNE2ENSG00000054654.11331.30520544.46560-0.716705.386204.38960HepG2PABPC4
SYNE2ENSG00000054654.11696.820001020.27670-0.550103.291301.41180HepG2PES1
SYNE2ENSG00000054654.11735.727901145.17010-0.638304.946302.74360HepG2PHF6
SYNE2ENSG00000054654.11867.487401106.21960-0.350703.432602.62030HepG2PPIL4
SYNE2ENSG00000054654.11544.48930777.62470-0.514206.110905.01090HepG2PRPF4
SYNE2ENSG00000054654.111112.02350550.781701.0135022.6337021.35740HepG2PTBP1
SYNE2ENSG00000054654.111592.741201284.009200.310804.602703.87890HepG2PUM1
SYNE2ENSG00000054654.111774.764701283.087100.467905.991905.01770HepG2PUM2
SYNE2ENSG00000054654.11953.624501361.18780-0.513406.367405.13460HepG2RBM15
SYNE2ENSG00000054654.11816.752901061.80660-0.378503.916303.32790HepG2RBM22
SYNE2ENSG00000054654.111083.29120541.387701.0006016.8986015.32240HepG2RBM25
SYNE2ENSG00000054654.111011.069301439.03030-0.509204.572503.27570HepG2RBM27
SYNE2ENSG00000054654.111441.54990612.979201.2336036.5194035.03250HepG2NELFE
SYNE2ENSG00000054654.111535.03500570.885001.4269050.9439048.98220HepG2RECQL
SYNE2ENSG00000054654.11589.92120799.31290-0.438203.729002.95500HepG2RPLP0
SYNE2ENSG00000054654.11754.140301277.65920-0.760605.650104.32430HepG2RPS10
SYNE2ENSG00000054654.111068.533001327.18670-0.312702.026701.33510HepG2RPS2
SYNE2ENSG00000054654.11533.46030970.76460-0.863707.588906.28190HepG2RPS3A
SYNE2ENSG00000054654.11583.809501104.49890-0.9198022.4900020.89950HepG2SAFB2
SYNE2ENSG00000054654.11515.17440914.15330-0.827407.460305.37390HepG2SART3
SYNE2ENSG00000054654.11952.84490573.460800.7324011.6187010.53730HepG2SF3B4
SYNE2ENSG00000054654.11800.210501326.02800-0.728706.074404.61260HepG2SMNDC1
SYNE2ENSG00000054654.11896.015101265.60990-0.498203.242901.51370HepG2SND1
SYNE2ENSG00000054654.11688.839301249.90260-0.859602.649601.37700HepG2SNRNP200
SYNE2ENSG00000054654.11444.155701220.16280-1.4579013.9071012.17820HepG2SNRNP70
SYNE2ENSG00000054654.111765.67980598.558301.5606065.6425064.03480HepG2SRSF1
SYNE2ENSG00000054654.111560.446901180.021200.403002.457001.51910HepG2SRSF3
SYNE2ENSG00000054654.11450.73950728.89600-0.693406.978705.95350HepG2SRSF7
SYNE2ENSG00000054654.11737.20710486.949900.598205.356804.63330HepG2SRSF9
SYNE2ENSG00000054654.111726.121501041.256600.7291018.9118017.82780HepG2SSB
SYNE2ENSG00000054654.11497.44640728.89220-0.551203.828302.39440HepG2STAU1
SYNE2ENSG00000054654.111886.180501358.234100.473609.491908.45760HepG2SUCLG1
SYNE2ENSG00000054654.11551.74540855.15590-0.632203.070101.66920HepG2SUGP2
SYNE2ENSG00000054654.11470.85000736.87170-0.646106.329704.94450HepG2SUPT6H
SYNE2ENSG00000054654.11647.70230901.83230-0.477503.048702.34320HepG2SUPV3L1
SYNE2ENSG00000054654.11846.10820537.978200.653208.273607.38870HepG2TAF15
SYNE2ENSG00000054654.11295.833401080.01370-1.8682042.0704039.91350HepG2TARDBP
SYNE2ENSG00000054654.11421.48580604.47070-0.520202.893601.87540HepG2TFIP11
SYNE2ENSG00000054654.11715.51320494.359800.533305.037903.92080HepG2TIA1
SYNE2ENSG00000054654.11852.719301205.02950-0.498905.973005.29110HepG2TIAL1
SYNE2ENSG00000054654.11629.664001215.93980-0.9494021.1210019.74670HepG2TRIM56
SYNE2ENSG00000054654.111479.27360933.484400.664107.616006.57800HepG2U2AF1
SYNE2ENSG00000054654.111615.861601250.760500.369402.235101.48670HepG2UBE2L3
SYNE2ENSG00000054654.11227.74520532.74470-1.2260013.9350012.25990HepG2UCHL5
SYNE2ENSG00000054654.11608.407901296.56850-1.0916032.5005030.66170HepG2UPF1
SYNE2ENSG00000054654.11582.27670825.81990-0.504102.509901.55680HepG2UPF2
SYNE2ENSG00000054654.11810.756101251.78550-0.6266011.3863010.30420HepG2UTP3
SYNE2ENSG00000054654.11494.59860869.49760-0.813906.529504.85360HepG2XPO5
SYNE2ENSG00000054654.111097.27110767.434000.515708.349407.28760HepG2ZC3H8
SYNE2ENSG00000054654.11708.822701425.97670-1.0085034.8071033.43050HepG2ZNF622
SYNE2ENSG00000054654.11921.281901299.48870-0.496203.198001.79300HepG2ZRANB2
SYNE2ENSG00000054654.1133.303907.076102.234603.447802.79160K562HNRNPC
SYNE2ENSG00000054654.1150.4130010.911602.207804.810603.71670K562PCBP3
SYNE2ENSG00000054654.1144.687208.369302.416605.398004.28020K562POLR2G
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SYNE2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of SYNE2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for SYNE2 is not avaliable on ENCORE database.