LPHN1

General Information

Gene Name       : LPHN1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LPHN1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LPHN1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LPHN1 RNA is bound by 22 proteins.  







eCLIP assay for LPHN1 is not avaliable on ENCORE database.





22 proteins are bound to LPHN1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr191426100314261084-3'-UTR,intron-Distal4.983735.17531K562DDX55
chr191426076514260822-3'-UTR,intron-Distal4.032795.45588K562PUM2
chr191426122514261349-3'-UTR,intron-Distal4.045375.61622K562UPF1
chr191431688814316930-5'-UTR,intron-Distal3.801515.54968K562GEMIN5
chr191427418914274288-CDS,intron-Distal,intron-Proximal3.204903.80761K562PTBP1
chr191426884114268865-CDS,intron-Distal,intron-Proximal3.629984.94406K562YBX3
chr191426786214267920-CDS,intron-Distal4.260963.35417K562METAP2
chr191426914914269201-CDS,intron-Distal,intron-Proximal3.177994.35865K562YBX3
chr191426746914267480-CDS,intron-Distal,intron-Proximal3.349903.07714K562YBX3
chr191426929214269348-CDS,intron-Distal3.286284.11795K562YBX3
chr191427148614271551-CDS,intron-Distal,intron-Proximal3.981943.06537K562RBFOX2
chr191429429914294355-CDS,intron-Distal,intron-Proximal4.853345.17615K562AQR
chr191426228214262339-CDS,intron-Distal4.504594.48994K562RBM15
chr191428118814281254-intron-Distal,intron-Proximal4.000847.33269K562PTBP1
chr191428015014280221-intron-Distal3.149043.40404K562CSTF2T
chr191426837914268420-intron-Distal3.857873.11168K562ZNF622
chr191427195914272066-intron-Distal,intron-Proximal4.013665.84546K562RBFOX2
chr191427729514277384-intron-Distal5.4325618.09814K562PTBP1
chr191427197914272074-intron-Distal,intron-Proximal4.127123.45219HepG2RBFOX2
chr191427481414274903-intron-Distal3.579005.02933K562CSTF2T
chr191427679114276915-intron-Distal4.100296.88653K562CSTF2T
chr191427111214271214-intron-Distal,intron-Proximal3.856103.25414K562RBFOX2
chr191427794814278025-intron-Distal4.270534.04290K562CSTF2T
chr191428053614280659-intron-Distal3.133645.38405K562ILF3
chr191427881214278865-intron-Distal5.031607.60596K562GTF2F1
chr191428602514286122-intron-Distal4.139654.38266K562TARDBP
chr191427207414272109-intron-Distal,intron-Proximal5.118604.48002K562AQR
chr191428719414287299-intron-Distal4.423174.13641K562TARDBP
chr191431644314316526-intron-Distal4.437244.98766K562EWSR1
chr191428625114286304-intron-Distal4.961475.62492K562EIF4G2
chr191428077814280844-intron-Distal7.5478830.65426K562WRN
chr191431647414316558-intron-Distal3.068603.50009K562CSTF2T
chr191431546714315540-intron-Distal5.428286.40067K562PTBP1
chr191427881614278862-intron-Distal4.475085.01722K562CSTF2T
chr191427882114278861-intron-Distal4.254323.55787K562PTBP1
chr191427752114277586-intron-Distal4.8100015.10611K562PTBP1
chr191427771314277756-intron-Distal,intron-Proximal4.317087.56720K562PTBP1
chr191427111414271252-intron-Distal,intron-Proximal5.9702913.04469K562SF3B4
chr191428095114281108-intron-Distal5.3667322.12948K562PTBP1
chr191428143114281494-intron-Distal,intron-Proximal4.323596.01372K562AQR
chr191431356114313643-intron-Distal4.729266.67086K562NONO
chr191428637314286553-intron-Distal5.119326.75032K562TARDBP
chr191431356514313647-intron-Distal4.457735.62460K562CSTF2T
chr191427910914279194-intron-Distal3.833595.03657K562PTBP1
chr191431357514313645-intron-Distal4.637515.55667K562EWSR1
chr191428602414286074-intron-Distal4.340967.62986K562EIF4G2
chr191427481814274907-intron-Distal3.574153.57928K562GTF2F1
chr191431662414316684-intron-Distal5.161734.38825K562DROSHA
chr191427697214277034-intron-Distal4.471094.84986K562GTF2F1
chr191427840014278467-intron-Distal4.483373.42734K562PTBP1
chr191428116514281275-intron-Distal,intron-Proximal3.875883.37631K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LPHN1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LPHN1 is not available on ENCORE database.

  • 95 RBPs can affect the levels of LPHN1.  








The Knockdown/knockout RNA-Seq assay for LPHN1 is not available on ENCORE database.





95 RBPs can affect the gene expression of LPHN1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LPHN1ENSG00000072071.12172.6330071.097601.279708.303907.06340HepG2AKAP8L
LPHN1ENSG00000072071.12138.3456082.415400.747202.436901.69470HepG2ASCC1
LPHN1ENSG00000072071.1222.5049078.30370-1.798805.632104.55310HepG2CIRBP
LPHN1ENSG00000072071.12211.5345070.754001.579907.414306.42390HepG2CKAP4
LPHN1ENSG00000072071.12224.7399095.404401.236005.420404.57060HepG2DDX3X
LPHN1ENSG00000072071.12258.9967082.007401.659005.694504.83590HepG2DDX6
LPHN1ENSG00000072071.12126.1441071.877600.811402.740701.57810HepG2EIF2S2
LPHN1ENSG00000072071.12128.0159072.267000.824803.267202.37180HepG2EIF4G1
LPHN1ENSG00000072071.12260.91470145.123000.846205.402204.61060HepG2ETF1
LPHN1ENSG00000072071.12167.2379095.682700.805502.588301.84170HepG2FIP1L1
LPHN1ENSG00000072071.12218.7775081.495701.424609.357008.16910HepG2G3BP1
LPHN1ENSG00000072071.12127.5015037.674501.758807.962506.08890HepG2GRSF1
LPHN1ENSG00000072071.12146.8291067.556001.119906.310004.91070HepG2HDGF
LPHN1ENSG00000072071.12109.2210056.339000.954902.225401.59710HepG2HNRNPC
LPHN1ENSG00000072071.12202.1766082.616401.291007.298206.20370HepG2HNRNPK
LPHN1ENSG00000072071.12154.3622065.570601.235105.578704.71710HepG2HNRNPLL
LPHN1ENSG00000072071.12101.1713055.966300.854102.914302.29360HepG2HNRNPU
LPHN1ENSG00000072071.1275.9381038.759800.970202.484301.37170HepG2KHDRBS1
LPHN1ENSG00000072071.12115.0864064.684900.831103.247902.14470HepG2KIF1C
LPHN1ENSG00000072071.12191.1183087.789901.122203.365901.98620HepG2KRR1
LPHN1ENSG00000072071.1245.7502087.92680-0.942502.513901.88660HepG2MAGOH
LPHN1ENSG00000072071.12222.8998088.406401.334107.138606.16040HepG2MATR3
LPHN1ENSG00000072071.12147.9386066.881301.145204.082002.89470HepG2MTPAP
LPHN1ENSG00000072071.12214.1561090.478701.242907.046306.05830HepG2NCBP2
LPHN1ENSG00000072071.12144.1690072.629600.989004.784503.78230HepG2NOL12
LPHN1ENSG00000072071.12105.5725049.917001.080504.329703.42900HepG2PPIL4
LPHN1ENSG00000072071.12109.6652065.591600.741402.541901.79730HepG2PRPF4
LPHN1ENSG00000072071.12256.1438073.547801.8001017.4990015.90370HepG2PUM2
LPHN1ENSG00000072071.12111.6738072.061800.631902.050601.50190HepG2PUS1
LPHN1ENSG00000072071.12178.7559093.060600.941604.545203.77200HepG2QKI
LPHN1ENSG00000072071.1212.2188065.68450-2.426404.425403.54450HepG2RAVER1
LPHN1ENSG00000072071.12174.0550084.455901.043205.303104.39800HepG2RBM25
LPHN1ENSG00000072071.12156.2988095.623700.708802.447701.93370HepG2NELFE
LPHN1ENSG00000072071.12144.8122089.055700.701302.555901.95990HepG2RECQL
LPHN1ENSG00000072071.1228.0244068.55080-1.290503.450902.70130HepG2RPLP0
LPHN1ENSG00000072071.12149.8952052.783501.505707.947206.96860HepG2RPS19
LPHN1ENSG00000072071.12102.9677040.848601.333704.596703.56780HepG2RPS3A
LPHN1ENSG00000072071.12112.7458022.220302.343006.152903.99190HepG2SF1
LPHN1ENSG00000072071.12133.2798064.899801.038104.041603.20400HepG2SF3B1
LPHN1ENSG00000072071.1286.6069021.538402.007504.050302.23760HepG2SFPQ
LPHN1ENSG00000072071.1278.2244019.831601.979704.497802.74120HepG2SNRNP200
LPHN1ENSG00000072071.1277.51630136.99430-0.821503.567903.02090HepG2SRFBP1
LPHN1ENSG00000072071.1256.6729093.37430-0.720401.924101.50930HepG2SRSF1
LPHN1ENSG00000072071.1248.14240118.93810-1.304806.269205.55490HepG2SSB
LPHN1ENSG00000072071.1291.3730035.525801.362805.029003.49810HepG2STIP1
LPHN1ENSG00000072071.12133.2006077.855000.774603.054202.40670HepG2SUCLG1
LPHN1ENSG00000072071.1224.1799054.19990-1.164502.003901.41450HepG2SUPV3L1
LPHN1ENSG00000072071.12143.5175063.920501.166805.093704.15430HepG2TARDBP
LPHN1ENSG00000072071.12111.8214054.868601.027004.366403.69000HepG2TRIM56
LPHN1ENSG00000072071.1235.7174081.84650-1.196302.931802.28600HepG2U2AF1
LPHN1ENSG00000072071.12209.80770103.271501.022507.038106.00810HepG2UPF1
LPHN1ENSG00000072071.1242.7306099.70490-1.222404.397603.67090HepG2UTP3
LPHN1ENSG00000072071.1234.90050113.57920-1.702409.121708.27570HepG2ZNF622
LPHN1ENSG00000072071.12468.80570827.31450-0.819408.905607.95020K562AQR
LPHN1ENSG00000072071.12587.26640841.16150-0.518405.555404.20830K562ATP5C1
LPHN1ENSG00000072071.12565.33630406.782400.474803.637602.08580K562BCCIP
LPHN1ENSG00000072071.12677.81260390.756100.794506.722704.90480K562CCAR1
LPHN1ENSG00000072071.12435.53900298.260100.546103.710702.46350K562CSTF2
LPHN1ENSG00000072071.12898.579701348.01280-0.585107.914906.29860K562CELF1
LPHN1ENSG00000072071.12311.59330631.89670-1.020003.529301.35770K562DAZAP1
LPHN1ENSG00000072071.12529.16190344.640900.618506.329404.33550K562DDX27
LPHN1ENSG00000072071.122070.97980950.264101.1238020.7389019.11000K562DDX47
LPHN1ENSG00000072071.12627.32410437.495700.519803.654202.09180K562DHX30
LPHN1ENSG00000072071.121075.63330397.448401.4362015.0760012.77330K562EIF3A
LPHN1ENSG00000072071.12692.42930449.722000.622504.041202.76230K562EIF3D
LPHN1ENSG00000072071.12466.14930176.360801.4022019.2470017.08310K562EIF3G
LPHN1ENSG00000072071.12780.44260449.354100.796302.048701.33940K562EIF4A3
LPHN1ENSG00000072071.12371.87800584.51640-0.652405.496004.27770K562FIP1L1
LPHN1ENSG00000072071.12356.16490481.26920-0.434302.465301.65770K562FMR1
LPHN1ENSG00000072071.1231.55240127.52270-2.014904.646103.67700K562G3BP2
LPHN1ENSG00000072071.12651.88600421.274200.629804.450502.61140K562GEMIN5
LPHN1ENSG00000072071.12727.34200436.142100.737707.666706.71980K562HNRNPC
LPHN1ENSG00000072071.12522.02190858.77580-0.718208.702906.75400K562HNRNPL
LPHN1ENSG00000072071.12343.12990480.79850-0.486702.583801.68740K562HNRNPM
LPHN1ENSG00000072071.121151.34710856.628200.426504.899903.69820K562HNRNPU
LPHN1ENSG00000072071.12536.13120792.44440-0.563704.728303.69500K562HSPD1
LPHN1ENSG00000072071.12358.64450589.85180-0.717803.499601.87330K562ILF2
LPHN1ENSG00000072071.12592.74300850.75120-0.521305.097503.91000K562KIF1C
LPHN1ENSG00000072071.12242.84650385.60590-0.667103.398102.35140K562KRR1
LPHN1ENSG00000072071.12678.23530309.620301.1312016.8437014.63880K562MAGOH
LPHN1ENSG00000072071.12444.75830308.948400.525602.167001.36020K562MATR3
LPHN1ENSG00000072071.12912.331101168.57240-0.357102.779301.64760K562MSI2
LPHN1ENSG00000072071.12377.06240668.02800-0.825105.950404.47810K562NAA15
LPHN1ENSG00000072071.12639.46580414.409900.625704.426902.68070K562NONO
LPHN1ENSG00000072071.12387.17850275.432800.491202.353701.45640K562PCBP2
LPHN1ENSG00000072071.12277.72810408.88660-0.558002.906602.13930K562PRPF8
LPHN1ENSG00000072071.12596.89090391.093500.609904.663303.44540K562PSIP1
LPHN1ENSG00000072071.12684.87080300.837001.1868019.3880017.70670K562PTBP1
LPHN1ENSG00000072071.12928.595201272.31740-0.454304.959803.49640K562PUM1
LPHN1ENSG00000072071.12380.39840794.99000-1.0634012.7294011.61180K562PUS1
LPHN1ENSG00000072071.12562.23510774.63940-0.462404.129803.42150K562RBM15
LPHN1ENSG00000072071.12433.85230281.167100.625704.202002.36800K562RBM34
LPHN1ENSG00000072071.12518.57280303.436500.773106.755004.95800K562NELFE
LPHN1ENSG00000072071.12885.92480416.379301.0892011.7879010.07250K562RPS19
LPHN1ENSG00000072071.12517.21260216.533401.256106.639805.00890K562RPS3
LPHN1ENSG00000072071.12697.194701044.35940-0.583008.298906.94500K562SF3A3
LPHN1ENSG00000072071.12214.18120132.373500.694102.938502.05570K562SF3B4
LPHN1ENSG00000072071.12829.16630439.067500.917104.636002.76650K562SFPQ
LPHN1ENSG00000072071.12485.60100338.446500.520702.720401.70680K562SRFBP1
LPHN1ENSG00000072071.12337.92110209.001500.693103.830802.56240K562SRSF4
LPHN1ENSG00000072071.12385.55040278.640600.468402.606701.59280K562SRSF5
LPHN1ENSG00000072071.12552.86990766.88510-0.472103.459501.91200K562SSRP1
LPHN1ENSG00000072071.12498.00440701.39150-0.494103.372901.96370K562STAU1
LPHN1ENSG00000072071.12547.23250298.441900.874606.582205.44920K562TARDBP
LPHN1ENSG00000072071.12504.69450287.899200.809705.475104.26370K562TIA1
LPHN1ENSG00000072071.12467.76940282.679500.726505.004403.45240K562TRA2A
LPHN1ENSG00000072071.1257.31050123.35490-1.105902.346201.34980K562U2AF1
LPHN1ENSG00000072071.12550.06880747.26210-0.442002.702701.51660K562UTP3
LPHN1ENSG00000072071.121401.51280998.522000.489008.996407.56060K562WDR43
LPHN1ENSG00000072071.12696.21810931.99330-0.420803.461102.47740K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LPHN1 is not available on ENCORE database.





2 RBPs can affect the splicing of LPHN1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSLPHN1ENSG00000072071.12chr19-142629441426303414262944142629621426312014263249-0.361000.000110.01832shorterK562FXR1
A3SSLPHN1ENSG00000072071.12chr19-142629441426303414262944142629621426312014263249-0.382000.000250.02569shorterK562SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LPHN1 is not avaliable on ENCORE database.