XYLT2

General Information

Gene Name       : XYLT2
Gene ID             : ENSG00000015532.9
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: XYLT2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878XYLT2ENSG00000015532.91.233.952.59ENCSR000AEF
HepG2XYLT2ENSG00000015532.917.206.2711.73ENCSR985KAT
K562XYLT2ENSG00000015532.94.732.923.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for XYLT2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • XYLT2 RNA is bound by 16 proteins.  







eCLIP assay for XYLT2 is not avaliable on ENCORE database.





16 proteins are bound to XYLT2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174843795248438091+3'-UTR,intron-Distal5.4871529.11344HepG2UPF1
chr174843819648438262+3'-UTR,intron-Distal4.346703.70369HepG2LIN28B
chr174843825648438309+3'-UTR,intron-Distal3.155774.92291HepG2UPF1
chr174843796248438043+3'-UTR,intron-Distal3.176464.61367K562UPF1
chr174843825948438329+3'-UTR,intron-Distal4.223734.25058HepG2GRSF1
chr174843795348438023+3'-UTR,intron-Distal3.364135.89157HepG2AKAP1
chr174843225848432337+CDS5.244557.92402HepG2LIN28B
chr174843115048431372+CDS3.5240010.91532HepG2SND1
chr174843096948431057+CDS,intron-Proximal4.103315.97994K562AQR
chr174843128048431336+CDS3.903633.43975HepG2LIN28B
chr174843088748431040+CDS,intron-Distal,intron-Proximal3.256275.47260HepG2AQR
chr174842363148423685+CDS,intron-Proximal4.512228.29703HepG2AQR
chr174842363548423743+CDS,intron-Distal,intron-Proximal3.4465411.79768K562AQR
chr174842475748424791+intron-Distal4.347174.28089HepG2FAM120A
chr174842386548423944+intron-Distal4.273164.66211HepG2XRN2
chr174842448648424557+intron-Distal3.463054.48425K562CSTF2T
chr174842368548423761+intron-Distal,intron-Proximal3.401804.45974HepG2GTF2F1
chr174842385748423939+intron-Distal4.5403112.12734HepG2CSTF2T
chr174842385248423910+intron-Distal3.285224.05280K562CSTF2T
chr174842364848423760+intron-Distal,intron-Proximal4.5480922.30070HepG2CSTF2T
chr174842482548424895+intron-Distal4.335214.48497K562NONO
chr174842365248423761+intron-Distal,intron-Proximal3.667799.88489HepG2FAM120A
chr174842366348423766+intron-Distal,intron-Proximal3.822399.67373K562CSTF2T
chr174843076748430945+intron-Distal,intron-Proximal4.296774.75311K562CSTF2T
chr174842368548423735+intron-Distal,intron-Proximal4.956246.03362HepG2AQR
chr174842366648423758+intron-Distal,intron-Proximal4.689754.41396HepG2FASTKD2
chr174842365148423737+intron-Distal,intron-Proximal3.850083.99124K562FUS
chr174842365948423772+intron-Distal,intron-Proximal3.665929.76099HepG2EFTUD2
chr174842403248424104+intron-Distal3.589253.73797K562CSTF2T
chr174842425848424357+intron-Distal3.194565.30839HepG2CSTF2T
chr174842383848423977+intron-Distal3.199426.36003HepG2FAM120A
chr174842401948424119+intron-Distal5.9452116.16917HepG2CSTF2T
chr174842383248423979+intron-Distal5.6588414.87262HepG2PRPF4
chr174842421648424303+intron-Distal3.547497.51684K562CSTF2T
chr174842365148423748+intron-Distal,intron-Proximal5.1872110.55630HepG2PRPF4
chr174842482948424874+intron-Distal3.647825.16304HepG2CSTF2T
chr174842400948424130+intron-Distal3.695966.45096HepG2PRPF4
chr174842449448424563+intron-Distal3.503998.40080HepG2CSTF2T
chr174842401648424090+intron-Distal3.670127.73670HepG2FAM120A
chr174842483348424928+intron-Distal5.322089.75980K562CSTF2T
chr174842365448423729+intron-Distal,intron-Proximal3.480744.36533K562GEMIN5
chr174842474848424789+intron-Distal4.004293.96304K562CSTF2T
chr174842393948423989+intron-Distal4.090758.42985HepG2CSTF2T
chr174842414548424216+intron-Distal4.761576.92157K562CSTF2T
chr174842475148424798+intron-Distal3.799106.49292HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for XYLT2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for XYLT2 is not available on ENCORE database.

  • 95 RBPs can affect the levels of XYLT2.  








The Knockdown/knockout RNA-Seq assay for XYLT2 is not available on ENCORE database.





95 RBPs can affect the gene expression of XYLT2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
XYLT2ENSG00000015532.5584.074901049.48780-0.845504.681703.48360HepG2ABCF1
XYLT2ENSG00000015532.51006.39120834.056900.270902.446301.72030HepG2AKAP8L
XYLT2ENSG00000015532.5917.874101089.33940-0.247102.080001.46920HepG2AUH
XYLT2ENSG00000015532.5374.54410585.26800-0.644002.941002.14830HepG2CALR
XYLT2ENSG00000015532.5483.04330826.03960-0.774103.494502.63180HepG2CIRBP
XYLT2ENSG00000015532.5705.13940829.95060-0.235101.968901.39570HepG2CKAP4
XYLT2ENSG00000015532.5715.17140475.379900.589102.970702.17520HepG2CNOT7
XYLT2ENSG00000015532.5961.80050626.784500.617707.560606.59590HepG2CELF1
XYLT2ENSG00000015532.5829.04180673.899400.298802.895102.13840HepG2DAZAP1
XYLT2ENSG00000015532.5267.61180492.06890-0.878702.670501.77470HepG2DDX24
XYLT2ENSG00000015532.51460.33580864.989800.755404.408303.64260HepG2DDX6
XYLT2ENSG00000015532.5586.21730794.31420-0.438304.501603.67440HepG2DKC1
XYLT2ENSG00000015532.5591.88960420.294600.493804.433903.55910HepG2DNAJC21
XYLT2ENSG00000015532.5675.75570416.503900.6981010.692309.50840HepG2DNAJC2
XYLT2ENSG00000015532.5413.44320570.20880-0.463802.933201.79310HepG2EFTUD2
XYLT2ENSG00000015532.51235.14470831.137100.571403.454302.79560HepG2EIF2S1
XYLT2ENSG00000015532.5362.05870555.27200-0.617004.273203.16650HepG2EIF3D
XYLT2ENSG00000015532.5508.57610664.88430-0.386602.469001.67030HepG2EIF4G1
XYLT2ENSG00000015532.51009.710001250.76910-0.308902.581501.99730HepG2ETF1
XYLT2ENSG00000015532.5441.27290811.19960-0.878406.913405.59800HepG2EWSR1
XYLT2ENSG00000015532.5574.66230913.11870-0.668103.146202.19560HepG2G3BP2
XYLT2ENSG00000015532.5325.25630494.38650-0.604103.888002.81200HepG2GEMIN5
XYLT2ENSG00000015532.5945.11210655.036300.528802.611201.98690HepG2GPKOW
XYLT2ENSG00000015532.51128.32960792.589200.509404.680403.44110HepG2HDGF
XYLT2ENSG00000015532.5600.64600392.929000.612103.904302.22520HepG2HNRNPAB
XYLT2ENSG00000015532.5715.31090544.390300.393803.567702.76160HepG2HNRNPF
XYLT2ENSG00000015532.5932.58310613.856300.6032010.294909.07340HepG2HNRNPL
XYLT2ENSG00000015532.5773.68310468.833200.7226010.928709.79050HepG2HNRNPU
XYLT2ENSG00000015532.5656.62110958.29860-0.545403.666702.24960HepG2HSPD1
XYLT2ENSG00000015532.5736.84630453.417600.700404.839203.20730HepG2KHDRBS1
XYLT2ENSG00000015532.5516.69260927.44740-0.844004.417403.59070HepG2MAGOH
XYLT2ENSG00000015532.51108.21560668.239800.7297011.8779010.34450HepG2NOL12
XYLT2ENSG00000015532.5536.83250294.470300.866205.543703.54530HepG2NOLC1
XYLT2ENSG00000015532.5729.91360878.80840-0.267802.226401.67090HepG2PCBP1
XYLT2ENSG00000015532.5892.02450418.166301.0929010.210208.84360HepG2PPIL4
XYLT2ENSG00000015532.5503.29180719.03790-0.514705.676604.61020HepG2PRPF4
XYLT2ENSG00000015532.5231.17180341.39630-0.562503.171802.31310HepG2PRPF8
XYLT2ENSG00000015532.5743.41320894.23310-0.266502.167301.67200HepG2PTBP1
XYLT2ENSG00000015532.51056.90610676.677300.643208.706807.54880HepG2PUM2
XYLT2ENSG00000015532.51246.43780968.449400.364002.184201.61790HepG2QKI
XYLT2ENSG00000015532.5196.89780452.95000-1.201902.319201.67030HepG2RAVER1
XYLT2ENSG00000015532.5688.254601045.39870-0.603008.209807.42700HepG2RBM22
XYLT2ENSG00000015532.5744.83720565.759100.396602.204001.32770HepG2RBM27
XYLT2ENSG00000015532.5606.06010995.18500-0.7155011.3466010.39370HepG2NELFE
XYLT2ENSG00000015532.5767.22860926.89880-0.272802.243001.68110HepG2RECQL
XYLT2ENSG00000015532.5203.71020337.69370-0.729204.342803.38170HepG2RRP9
XYLT2ENSG00000015532.5702.50870417.532200.7505011.5106010.33480HepG2SAFB2
XYLT2ENSG00000015532.5643.49680449.904200.516203.015001.64980HepG2SART3
XYLT2ENSG00000015532.5396.38760542.25630-0.452102.866601.90920HepG2SERBP1
XYLT2ENSG00000015532.5765.75100998.75420-0.383301.936501.37000HepG2SF3A3
XYLT2ENSG00000015532.5750.54610930.98930-0.310802.764602.17280HepG2SF3B4
XYLT2ENSG00000015532.51028.75200611.684800.7499015.9344014.50520HepG2SLBP
XYLT2ENSG00000015532.5735.69090442.264200.734102.959401.32020HepG2SND1
XYLT2ENSG00000015532.5658.04550344.499100.933602.670301.39050HepG2SNRNP200
XYLT2ENSG00000015532.5440.594501180.71660-1.4221046.9312045.52850HepG2SRFBP1
XYLT2ENSG00000015532.5398.45190971.76060-1.2862031.5732030.35750HepG2SRSF1
XYLT2ENSG00000015532.5414.48660665.84390-0.683903.594202.43900HepG2SRSF3
XYLT2ENSG00000015532.5843.82390629.858400.421804.094903.36130HepG2SRSF5
XYLT2ENSG00000015532.5540.83360790.58700-0.547707.147006.33490HepG2SRSF9
XYLT2ENSG00000015532.5309.150901025.10180-1.7294057.5473055.95570HepG2SSB
XYLT2ENSG00000015532.5760.87900415.766000.871807.715505.80220HepG2STIP1
XYLT2ENSG00000015532.51079.15730716.306700.5912010.478809.39940HepG2SUCLG1
XYLT2ENSG00000015532.5569.31700873.48210-0.617502.868402.29810HepG2TAF15
XYLT2ENSG00000015532.5337.05350455.65800-0.435002.706802.21060HepG2TIAL1
XYLT2ENSG00000015532.5988.21780459.625001.1043027.6273026.07960HepG2TRIM56
XYLT2ENSG00000015532.51002.93280623.233000.686308.767607.05900HepG2TUFM
XYLT2ENSG00000015532.5506.75410906.19510-0.838505.684504.80070HepG2U2AF1
XYLT2ENSG00000015532.5953.86620659.699000.531903.866802.87090HepG2UBE2L3
XYLT2ENSG00000015532.5707.42930855.14890-0.273602.157701.61520HepG2UTP3
XYLT2ENSG00000015532.5619.52960427.975500.533502.729001.64280HepG2XPO5
XYLT2ENSG00000015532.5315.51790709.56870-1.1692024.2874022.65620HepG2ZC3H8
XYLT2ENSG00000015532.5818.39640974.14670-0.251302.490701.96370HepG2ZNF622
XYLT2ENSG00000015532.5297.07340424.34130-0.514402.825301.57250K562APOBEC3C
XYLT2ENSG00000015532.5302.49950166.488900.861406.720305.19360K562BCLAF1
XYLT2ENSG00000015532.5572.59080395.800800.532603.463002.22000K562CPEB4
XYLT2ENSG00000015532.5210.37210126.306600.735903.561902.34130K562CSTF2
XYLT2ENSG00000015532.5380.48940241.258800.657204.201302.72740K562EIF4B
XYLT2ENSG00000015532.5341.42150236.113600.532003.252901.86430K562EXOSC5
XYLT2ENSG00000015532.5258.12930180.673500.514602.317001.54070K562FIP1L1
XYLT2ENSG00000015532.5165.29010278.61660-0.753305.154604.36470K562FXR1
XYLT2ENSG00000015532.517.7889074.13780-2.059205.667404.57370K562G3BP2
XYLT2ENSG00000015532.5300.43560209.619900.519202.566301.47410K562HNRNPF
XYLT2ENSG00000015532.578.39930141.77770-0.854703.088501.77930K562HNRNPK
XYLT2ENSG00000015532.5386.55550142.018201.444503.765002.49790K562IGF2BP2
XYLT2ENSG00000015532.5240.26060144.430600.734102.509201.38830K562IGF2BP3
XYLT2ENSG00000015532.5304.26620205.096700.568902.782701.95960K562PPIG
XYLT2ENSG00000015532.5342.98810210.445600.704604.346603.17380K562PSIP1
XYLT2ENSG00000015532.5382.29800524.71600-0.456802.677101.87360K562PUF60
XYLT2ENSG00000015532.5324.22180466.59320-0.525202.979502.42000K562PUS1
XYLT2ENSG00000015532.5228.62310138.974800.718003.366702.43480K562RBM22
XYLT2ENSG00000015532.5225.89970135.495800.737303.713702.02280K562RBM34
XYLT2ENSG00000015532.5418.89970256.579800.707102.909101.34770K562SBDS
XYLT2ENSG00000015532.5119.8511076.992700.638302.073101.33510K562SF3B4
XYLT2ENSG00000015532.5509.72510281.755300.855203.791802.17180K562SFPQ
XYLT2ENSG00000015532.5240.39960134.235300.840604.836503.37780K562SRSF5
XYLT2ENSG00000015532.5150.64380231.06750-0.617203.052802.18710K562SYNCRIP
XYLT2ENSG00000015532.5323.48830143.821201.1693010.125708.63800K562TARDBP
XYLT2ENSG00000015532.5284.19450138.735101.034407.998106.49400K562TIA1
XYLT2ENSG00000015532.5240.70990136.170300.821804.604703.13020K562TRA2A
XYLT2ENSG00000015532.5301.39020215.075000.486702.212101.37980K562TRIM56
XYLT2ENSG00000015532.5639.48240501.754000.349802.776201.50330K562TROVE2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for XYLT2 is not available on ENCORE database.





1 RBPs can affect the splicing of XYLT2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEXYLT2ENSG00000015532.5chr17+484344174843461348433871484341344843556748435901-0.213000.001210.05580excludedHepG2PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for XYLT2 is not avaliable on ENCORE database.