HMGB3

General Information

Gene Name       : HMGB3
Gene ID             : ENSG00000029993.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HMGB3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HMGB3ENSG00000029993.14115.06112.79113.93ENCSR000AEF
HepG2HMGB3ENSG00000029993.1448.91127.0287.97ENCSR985KAT
K562HMGB3ENSG00000029993.14126.70112.83119.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HMGB3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HMGB3 RNA is bound by 13 proteins.  







eCLIP assay for HMGB3 is not avaliable on ENCORE database.





13 proteins are bound to HMGB3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX150156400150156460+3'-UTR3.046253.07069HepG2CSTF2
chrX150156402150156461+3'-UTR4.642575.85370K562CSTF2T
chrX150156790150156867+3'-UTR3.671394.66091K562PUM1
chrX150156376150156447+3'-UTR,CDS4.198863.38968HepG2BCLAF1
chrX150156356150156447+3'-UTR,CDS3.170816.50677K562UCHL5
chrX150156787150156838+3'-UTR4.4126314.14980K562PUM2
chrX150156739150156786+3'-UTR4.4275110.62286K562PUM2
chrX150151834150151907+5'-UTR,intron-Distal,intron-Proximal6.053147.66714HepG2EFTUD2
chrX150151772150151850+5'-UTR,intron-Distal,intron-Proximal3.7414714.94351K562DDX3X
chrX150154522150154559+CDS,intron-Proximal4.085133.12746HepG2GRWD1
chrX150156248150156324+CDS,intron-Proximal4.790756.46917K562ZNF622
chrX150154572150154664+CDS,intron-Proximal3.526883.87469HepG2BCLAF1
chrX150154557150154663+CDS3.490004.72836K562ZNF800
chrX150154177150154223+CDS,intron-Proximal4.093083.31827HepG2GRWD1
chrX150156257150156356+CDS3.440398.10543K562UCHL5
chrX150152816150152866+intron-Distal4.868705.14276HepG2NKRF
chrX150152242150152354+intron-Distal5.038147.58908K562PRPF8
chrX150152254150152361+intron-Distal3.277423.59357HepG2NKRF
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HMGB3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HMGB3 is not available on ENCORE database.

  • 149 RBPs can affect the levels of HMGB3.  








The Knockdown/knockout RNA-Seq assay for HMGB3 is not available on ENCORE database.





149 RBPs can affect the gene expression of HMGB3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HMGB3ENSG00000029993.10917.202301318.57280-0.523703.306602.27980HepG2ABCF1
HMGB3ENSG00000029993.10717.78870963.12600-0.424205.012904.00560HepG2AKAP8L
HMGB3ENSG00000029993.10291.40560746.38470-1.3569018.5524016.73850HepG2ASCC1
HMGB3ENSG00000029993.10760.898901190.56140-0.645904.509002.75360HepG2ATP5C1
HMGB3ENSG00000029993.10874.623801676.14100-0.9384026.8748025.12990HepG2AUH
HMGB3ENSG00000029993.10286.386601023.89300-1.8380027.5382025.22590HepG2BCLAF1
HMGB3ENSG00000029993.10334.795901487.38480-2.1514063.9731061.91470HepG2BOP1
HMGB3ENSG00000029993.10645.91830988.27940-0.613604.521702.96790HepG2BUD13
HMGB3ENSG00000029993.10758.006101181.79100-0.640709.096007.81670HepG2CALR
HMGB3ENSG00000029993.10957.290701596.49520-0.737906.670205.13980HepG2CCAR1
HMGB3ENSG00000029993.10509.58150709.11470-0.476703.151702.32820HepG2CIRBP
HMGB3ENSG00000029993.10326.46190958.39720-1.5537051.3305049.32030HepG2CKAP4
HMGB3ENSG00000029993.10268.483901365.47040-2.3465064.9747062.39770HepG2CPSF6
HMGB3ENSG00000029993.10414.203001086.34730-1.3911011.050609.01780HepG2CPSF7
HMGB3ENSG00000029993.10696.26730973.26570-0.483205.614504.16620HepG2YBX3
HMGB3ENSG00000029993.10842.360101587.48240-0.9142022.8981021.41680HepG2CELF1
HMGB3ENSG00000029993.10876.041801706.81420-0.9622033.7701031.74070HepG2DAZAP1
HMGB3ENSG00000029993.10503.27620808.93060-0.684703.355502.61360HepG2DDX21
HMGB3ENSG00000029993.10590.79020877.74390-0.571204.166702.47160HepG2DDX28
HMGB3ENSG00000029993.10430.59400864.11840-1.0049011.6188010.41690HepG2DDX3X
HMGB3ENSG00000029993.10398.75270629.91010-0.659705.855704.02500HepG2DDX47
HMGB3ENSG00000029993.10741.818501550.60180-1.063708.547906.88840HepG2DDX59
HMGB3ENSG00000029993.10786.208001032.62660-0.393302.954201.91250HepG2DDX5
HMGB3ENSG00000029993.10326.29780742.26250-1.1857013.0009011.78270HepG2DDX6
HMGB3ENSG00000029993.10658.92470921.74100-0.484203.351902.27700HepG2DHX30
HMGB3ENSG00000029993.10503.97320955.66450-0.9232017.3739015.75860HepG2DNAJC21
HMGB3ENSG00000029993.10528.23630947.23950-0.8425018.9511017.39210HepG2DNAJC2
HMGB3ENSG00000029993.10459.09020744.28210-0.697103.676702.39040HepG2AGO1
HMGB3ENSG00000029993.10118.35330713.58780-2.5920049.3999047.16800HepG2EIF2S1
HMGB3ENSG00000029993.10477.49430761.37480-0.673105.309904.08730HepG2EIF3D
HMGB3ENSG00000029993.10325.48070788.61420-1.2767015.6637014.15970HepG2EIF4A3
HMGB3ENSG00000029993.10864.700101683.97960-0.9616027.4332025.39310HepG2EIF4G1
HMGB3ENSG00000029993.10541.649601613.12630-1.5744037.8745035.33740HepG2EIF4G2
HMGB3ENSG00000029993.101327.759201924.43430-0.5354010.856509.79270HepG2ETF1
HMGB3ENSG00000029993.10344.73620680.44430-0.9810014.1378011.55920HepG2FAM120A
HMGB3ENSG00000029993.10446.33760770.49350-0.787604.497703.08940HepG2FASTKD2
HMGB3ENSG00000029993.10594.18700964.25050-0.698505.883604.10080HepG2FKBP4
HMGB3ENSG00000029993.10727.712501367.87300-0.910504.409803.13430HepG2FTO
HMGB3ENSG00000029993.10339.67550450.53330-0.407502.221401.51010HepG2FUBP3
HMGB3ENSG00000029993.101175.17470795.630700.562604.976004.06790HepG2FXR1
HMGB3ENSG00000029993.10995.73820783.543500.345702.161001.37890HepG2G3BP2
HMGB3ENSG00000029993.10581.474901547.78520-1.4124025.0580023.34240HepG2GPKOW
HMGB3ENSG00000029993.10616.24250915.22730-0.570608.466506.87440HepG2HDGF
HMGB3ENSG00000029993.10454.26730964.82020-1.0867016.9836015.60510HepG2HNRNPA1
HMGB3ENSG00000029993.10944.519501568.66860-0.7319015.9847014.11970HepG2HNRNPA2B1
HMGB3ENSG00000029993.10373.346801073.18870-1.5233030.7421028.72780HepG2HNRNPC
HMGB3ENSG00000029993.10755.882501333.54430-0.8190018.3179016.68140HepG2HNRNPF
HMGB3ENSG00000029993.10773.525401554.74100-1.0072034.5489032.49510HepG2HNRNPL
HMGB3ENSG00000029993.10393.579001477.08730-1.9080046.2728044.21500HepG2HNRNPLL
HMGB3ENSG00000029993.10919.978101066.09310-0.212701.830201.32760HepG2HNRNPU
HMGB3ENSG00000029993.10670.456901313.16630-0.9698018.9250017.21870HepG2IGF2BP1
HMGB3ENSG00000029993.10400.89220750.26070-0.904209.330708.17260HepG2IGF2BP2
HMGB3ENSG00000029993.101237.57080704.051100.813703.233602.16780HepG2IGF2BP3
HMGB3ENSG00000029993.10755.846701088.97800-0.526809.688108.39870HepG2ILF2
HMGB3ENSG00000029993.10676.03560876.31370-0.374304.445603.16520HepG2KIF1C
HMGB3ENSG00000029993.101222.966101685.07410-0.462403.136102.24890HepG2LARP4
HMGB3ENSG00000029993.101199.56110793.025300.597005.686303.42480HepG2MARK2
HMGB3ENSG00000029993.10709.164301506.61610-1.0871011.358109.39270HepG2MTPAP
HMGB3ENSG00000029993.10581.85650905.17320-0.637504.943503.33120HepG2NAA15
HMGB3ENSG00000029993.10497.74340819.23020-0.718906.195205.26350HepG2NCBP2
HMGB3ENSG00000029993.101210.835601692.47990-0.483106.634505.45860HepG2NOL12
HMGB3ENSG00000029993.10563.023801063.41900-0.917405.477203.91230HepG2NONO
HMGB3ENSG00000029993.10824.874801309.77980-0.667107.723606.51690HepG2NSUN2
HMGB3ENSG00000029993.10447.17630729.60710-0.706306.039604.98430HepG2PABPC4
HMGB3ENSG00000029993.10867.234701055.24390-0.283102.666401.83160HepG2PARN
HMGB3ENSG00000029993.10330.59360735.01000-1.1527022.4466020.99110HepG2PCBP1
HMGB3ENSG00000029993.10368.33640975.25320-1.4048016.1475013.95890HepG2PCBP2
HMGB3ENSG00000029993.10690.97320950.86900-0.460605.247804.26220HepG2PPIL4
HMGB3ENSG00000029993.10737.381501038.94860-0.494606.761505.61310HepG2PRPF4
HMGB3ENSG00000029993.10499.43280893.90250-0.839808.048906.75520HepG2PRPF8
HMGB3ENSG00000029993.10998.54330747.929600.416804.774504.09830HepG2PTBP1
HMGB3ENSG00000029993.10813.698901615.65310-0.9896018.9979017.62060HepG2PUF60
HMGB3ENSG00000029993.101372.602701715.12570-0.321405.096004.34090HepG2PUM1
HMGB3ENSG00000029993.101093.690201713.84890-0.6480010.531009.26890HepG2PUM2
HMGB3ENSG00000029993.10788.52300976.48580-0.308403.174002.52430HepG2PUS1
HMGB3ENSG00000029993.10638.51740809.96340-0.343101.884001.35350HepG2QKI
HMGB3ENSG00000029993.10465.97770941.09610-1.014107.023905.92770HepG2RAVER1
HMGB3ENSG00000029993.10768.210701155.11330-0.588508.024306.66820HepG2RBM15
HMGB3ENSG00000029993.101335.274101608.47100-0.268602.648002.13860HepG2RBM22
HMGB3ENSG00000029993.10445.44560735.11760-0.722707.847706.76290HepG2RBM25
HMGB3ENSG00000029993.10455.855901575.98440-1.789608.744505.77890HepG2RBM39
HMGB3ENSG00000029993.101532.85020832.349300.8809021.8564020.61690HepG2NELFE
HMGB3ENSG00000029993.101313.80690775.264700.7609016.0942014.80820HepG2RECQL
HMGB3ENSG00000029993.10656.972701436.46560-1.1286021.3958019.85940HepG2RPLP0
HMGB3ENSG00000029993.10446.12210924.52690-1.051309.221607.59480HepG2RPS10
HMGB3ENSG00000029993.10829.719801041.64250-0.328202.267801.53840HepG2RPS2
HMGB3ENSG00000029993.10318.19450536.50500-0.753704.948403.87770HepG2RPS3A
HMGB3ENSG00000029993.10341.07380884.28420-1.3744017.7548016.07930HepG2RRP9
HMGB3ENSG00000029993.10428.36980949.40030-1.1482029.2796027.49860HepG2SAFB2
HMGB3ENSG00000029993.10522.298401461.97740-1.4850033.5471031.42140HepG2SF3B1
HMGB3ENSG00000029993.10651.62760778.63840-0.256901.806201.31130HepG2SF3B4
HMGB3ENSG00000029993.10823.732201549.23870-0.9113028.0841026.30700HepG2SLBP
HMGB3ENSG00000029993.10481.61830959.80750-0.994909.714607.84670HepG2SMNDC1
HMGB3ENSG00000029993.10635.30290916.06620-0.528003.311601.56050HepG2SND1
HMGB3ENSG00000029993.10582.892701549.01930-1.410106.166404.03480HepG2SNRNP200
HMGB3ENSG00000029993.10523.560501626.72310-1.6355022.3527020.20180HepG2SNRNP70
HMGB3ENSG00000029993.10787.609101816.70870-1.2058047.7488046.33850HepG2SRFBP1
HMGB3ENSG00000029993.101654.80320812.751501.0257031.5188030.30400HepG2SRSF1
HMGB3ENSG00000029993.101044.328101573.22710-0.591204.882503.52100HepG2SRSF3
HMGB3ENSG00000029993.101136.473501595.26840-0.489208.183907.18160HepG2SRSF5
HMGB3ENSG00000029993.10643.870701310.14280-1.0249027.1683025.42770HepG2SRSF7
HMGB3ENSG00000029993.10482.42060661.23520-0.454904.544903.87030HepG2SRSF9
HMGB3ENSG00000029993.10856.888901577.33320-0.8803024.8255023.63080HepG2SSB
HMGB3ENSG00000029993.10575.03000879.48930-0.613003.288501.97210HepG2SUB1
HMGB3ENSG00000029993.101525.511001814.22000-0.250103.085702.43580HepG2SUCLG1
HMGB3ENSG00000029993.10327.07450613.30010-0.907007.103705.01270HepG2SUGP2
HMGB3ENSG00000029993.10366.58440899.48670-1.2950012.4284010.55730HepG2SUPT6H
HMGB3ENSG00000029993.10429.255701153.24220-1.4258020.2929018.76380HepG2SUPV3L1
HMGB3ENSG00000029993.101375.55690730.592600.9128020.3570019.03250HepG2TAF15
HMGB3ENSG00000029993.10636.495001439.91990-1.1778022.0513020.37060HepG2TARDBP
HMGB3ENSG00000029993.10434.15600773.03120-0.832307.625906.11890HepG2TFIP11
HMGB3ENSG00000029993.10364.941901035.89140-1.5051037.5613036.10780HepG2TIAL1
HMGB3ENSG00000029993.10385.499701045.17000-1.4389044.8414042.93420HepG2TRIM56
HMGB3ENSG00000029993.101269.181301578.48770-0.314602.609901.76320HepG2TUFM
HMGB3ENSG00000029993.10860.355001139.28940-0.405102.323501.74300HepG2U2AF1
HMGB3ENSG00000029993.10745.425101802.95370-1.274204.817303.49020HepG2U2AF2
HMGB3ENSG00000029993.10807.612201670.84580-1.0488014.4254012.48140HepG2UBE2L3
HMGB3ENSG00000029993.10277.41630681.31550-1.2963016.8750015.03540HepG2UCHL5
HMGB3ENSG00000029993.10296.12540842.88970-1.5091040.5759038.57620HepG2UPF1
HMGB3ENSG00000029993.10754.426501056.24750-0.485502.442801.50280HepG2UPF2
HMGB3ENSG00000029993.10586.84210866.36800-0.562007.207305.60300HepG2UTP18
HMGB3ENSG00000029993.10329.76900480.54020-0.543202.790001.68750HepG2XPO5
HMGB3ENSG00000029993.10850.774701135.23790-0.416102.396901.71790HepG2XRN2
HMGB3ENSG00000029993.10383.43850927.01640-1.2736037.2123035.80250HepG2ZNF622
HMGB3ENSG00000029993.10407.79620940.31680-1.2053013.6266010.70870HepG2ZRANB2
HMGB3ENSG00000029993.101396.615801914.39760-0.455004.562902.96720K562ABCF1
HMGB3ENSG00000029993.101670.545002072.49220-0.311002.379401.82880K562AQR
HMGB3ENSG00000029993.10813.878101082.88300-0.412005.393704.03500K562BCLAF1
HMGB3ENSG00000029993.10589.362601194.19100-1.018805.739004.46960K562BOP1
HMGB3ENSG00000029993.10912.555901333.39470-0.547104.831902.87930K562BUD13
HMGB3ENSG00000029993.10329.52120551.77560-0.743704.817503.34080K562CCAR1
HMGB3ENSG00000029993.101076.410301616.09580-0.586307.009105.04520K562CIRBP
HMGB3ENSG00000029993.101193.926501765.70620-0.564503.480001.83480K562CKAP4
HMGB3ENSG00000029993.10642.888201269.85000-0.982006.404805.21230K562CPSF6
HMGB3ENSG00000029993.102436.362402932.26700-0.267302.682201.72230K562CELF1
HMGB3ENSG00000029993.10681.24220952.30230-0.483304.776003.35340K562DDX3X
HMGB3ENSG00000029993.101113.244301846.50380-0.7300018.1705016.63300K562DDX47
HMGB3ENSG00000029993.101329.814301606.07040-0.272302.629901.78050K562DKC1
HMGB3ENSG00000029993.10642.30480987.93610-0.621205.676704.34040K562EFTUD2
HMGB3ENSG00000029993.10757.498901045.96780-0.465506.237304.39290K562EIF2S1
HMGB3ENSG00000029993.101076.316401528.69590-0.506207.843306.72340K562EIF2S2
HMGB3ENSG00000029993.10375.69430561.27670-0.579202.720101.72520K562EIF3A
HMGB3ENSG00000029993.10731.057501057.94280-0.533203.570302.37940K562EIF3D
HMGB3ENSG00000029993.10736.39900994.90070-0.434103.732502.78430K562EIF4A3
HMGB3ENSG00000029993.102032.356102384.75720-0.230702.138301.30610K562EIF4G2
HMGB3ENSG00000029993.10775.280601291.88290-0.736704.538903.44050K562FMR1
HMGB3ENSG00000029993.10669.480001094.91820-0.709704.522003.32780K562FTO
HMGB3ENSG00000029993.10682.78110990.45530-0.536704.097602.33410K562GEMIN5
HMGB3ENSG00000029993.10695.462301212.46000-0.801904.888903.83600K562GPKOW
HMGB3ENSG00000029993.101541.952002037.25530-0.401904.264603.32930K562GRSF1
HMGB3ENSG00000029993.10394.345501062.01250-1.4293023.3473021.69590K562HNRNPC
HMGB3ENSG00000029993.101051.164001507.48740-0.520204.072802.72700K562IGF2BP2
HMGB3ENSG00000029993.10422.030201035.11710-1.294409.987908.09700K562KRR1
HMGB3ENSG00000029993.102282.573301774.458100.363203.900802.79070K562MBNL1
HMGB3ENSG00000029993.10711.005101183.46850-0.735103.816302.77540K562METAP2
HMGB3ENSG00000029993.10886.345101316.91370-0.5712010.264308.80870K562MTPAP
HMGB3ENSG00000029993.101050.263601463.16260-0.478309.828908.53920K562NSUN2
HMGB3ENSG00000029993.101092.888302013.11970-0.881302.591201.40780K562PABPC1
HMGB3ENSG00000029993.101164.045201548.86360-0.412104.518402.75150K562PCBP1
HMGB3ENSG00000029993.101152.510801410.07880-0.291002.191901.32610K562PCBP2
HMGB3ENSG00000029993.10735.43490952.16650-0.372602.597101.72740K562PSIP1
HMGB3ENSG00000029993.103180.720802601.946200.289702.212001.48340K562PUF60
HMGB3ENSG00000029993.103287.836702767.605900.248402.417401.42570K562PUM1
HMGB3ENSG00000029993.102138.848002711.67730-0.342404.775003.50250K562PUM2
HMGB3ENSG00000029993.102020.446101480.167500.448804.397103.73550K562PUS1
HMGB3ENSG00000029993.10760.092401160.61280-0.610603.591001.93600K562RAVER1
HMGB3ENSG00000029993.101730.485901442.260600.262702.625802.04650K562RBM15
HMGB3ENSG00000029993.10584.70380868.54060-0.570905.932104.47650K562RCC2
HMGB3ENSG00000029993.10689.47550979.38290-0.506402.257001.52270K562RPS19
HMGB3ENSG00000029993.10975.177301443.83770-0.566209.321307.88970K562SF3A3
HMGB3ENSG00000029993.10716.234401152.85280-0.686703.802202.65380K562SF3B1
HMGB3ENSG00000029993.101039.613901265.39570-0.283502.313501.53360K562SF3B4
HMGB3ENSG00000029993.101233.382001509.29570-0.291302.400801.73410K562SRSF1
HMGB3ENSG00000029993.101251.944001651.43790-0.399603.167601.81500K562STAU1
HMGB3ENSG00000029993.10545.50380931.02600-0.771207.237105.53900K562SUPV3L1
HMGB3ENSG00000029993.101103.32830910.638300.276802.101901.38510K562SYNCRIP
HMGB3ENSG00000029993.101022.190101527.60390-0.579606.259505.15650K562TARDBP
HMGB3ENSG00000029993.101221.378201473.52060-0.270802.150701.43690K562TIA1
HMGB3ENSG00000029993.10540.84170915.84770-0.759907.526805.92020K562TIAL1
HMGB3ENSG00000029993.10578.20980972.76000-0.750508.859506.96080K562TRIM56
HMGB3ENSG00000029993.101185.550401609.98570-0.441503.593101.96750K562TRIP6
HMGB3ENSG00000029993.101286.490301568.33370-0.285803.433602.01040K562TROVE2
HMGB3ENSG00000029993.101008.598101218.15490-0.272302.124201.42090K562U2AF2
HMGB3ENSG00000029993.102364.563602933.65880-0.311102.885201.45070K562UBE2L3
HMGB3ENSG00000029993.101036.098301551.42600-0.5824011.6630010.31520K562UPF1
HMGB3ENSG00000029993.101113.794301520.51270-0.449103.755702.34600K562UTP3
HMGB3ENSG00000029993.101067.301301327.50020-0.314702.604801.75300K562WDR3
HMGB3ENSG00000029993.10731.071901003.11490-0.456403.321101.95740K562XRN2
HMGB3ENSG00000029993.101803.949402334.83090-0.372203.713302.68660K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HMGB3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HMGB3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HMGB3 is not avaliable on ENCORE database.