ROGDI

General Information

Gene Name       : ROGDI
Gene ID             : ENSG00000067836.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ROGDI)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ROGDIENSG00000067836.121.175.143.15ENCSR000AEF
HepG2ROGDIENSG00000067836.1230.1910.8120.50ENCSR985KAT
K562ROGDIENSG00000067836.1217.9111.0714.49ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ROGDI is not avaliable on ENCORE database.



Proteins bound to RNA
  • ROGDI RNA is bound by 12 proteins.  







eCLIP assay for ROGDI is not avaliable on ENCORE database.





12 proteins are bound to ROGDI RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1648471064847388-3'-UTR,intron-Distal,intron-Proximal3.723374.54434HepG2UPF1
chr1648469974847115-3'-UTR,intron-Distal4.393564.76744HepG2LSM11
chr1648496864849773-3'-UTR,CDS,intron-Distal,intron-Proximal5.308418.25598HepG2PPIG
chr1648485004848575-3'-UTR,CDS,intron-Distal,intron-Proximal5.035846.04760K562AQR
chr1648504954850541-5'-UTR,CDS,intron-Distal,intron-Proximal3.070593.21309HepG2GRWD1
chr1648505744850664-5'-UTR,CDS,intron-Distal,intron-Proximal4.938075.03032HepG2SF3B4
chr1648513174851388-CDS,intron-Distal,intron-Proximal3.484247.20196HepG2RBFOX2
chr1648512834851376-CDS,intron-Distal,intron-Proximal4.0340913.57822HepG2EFTUD2
chr1648515304851629-CDS,intron-Distal,intron-Proximal4.681374.48002K562AQR
chr1648512354851269-CDS,intron-Distal,intron-Proximal4.748776.67793HepG2EFTUD2
chr1648523384852408-CDS,intron-Distal,intron-Proximal3.5609010.11149HepG2PRPF8
chr1648513154851383-CDS,intron-Distal,intron-Proximal4.386685.11005HepG2PRPF4
chr1648514584851524-CDS,intron-Distal,intron-Proximal4.6768014.79390HepG2PRPF8
chr1648524304852501-CDS,intron-Distal,intron-Proximal5.6676915.28751HepG2EFTUD2
chr1648514474851517-CDS,intron-Distal,intron-Proximal3.761505.24452HepG2PPIG
chr1648524764852548-CDS,intron-Distal,intron-Proximal3.654268.96944HepG2PRPF8
chr1648523504852393-CDS,intron-Distal,intron-Proximal3.274295.76899HepG2EFTUD2
chr1648521494852218-intron-Distal,intron-Proximal3.119474.07440K562PRPF8
chr1648516704851720-intron-Distal,intron-Proximal4.361687.39218K562SF3B4
chr1648516664851722-intron-Distal,intron-Proximal3.236025.31735HepG2SF3B4
chr1648523064852323-intron-Distal,intron-Proximal4.348783.32446HepG2PRPF8
chr1648522534852293-intron-Distal,intron-Proximal5.569597.24749HepG2EFTUD2
chr1648514344851487-intron-Distal,intron-Proximal3.872203.28461K562BUD13
chr1648521404852200-intron-Distal,intron-Proximal4.7089011.24022HepG2EFTUD2
chr1648515934851662-intron-Distal,intron-Proximal4.565504.24670HepG2SF3B4
chr1648516834851734-intron-Distal,intron-Proximal4.545393.85435K562PRPF8
chr1648516954851776-intron-Distal,intron-Proximal4.995409.50259HepG2EFTUD2
chr1648507114850820-intron-Distal3.583304.89779HepG2PTBP1
chr1648485364848569-intron-Distal,intron-Proximal5.078506.69228HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ROGDI is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ROGDI is not available on ENCORE database.

  • 88 RBPs can affect the levels of ROGDI.  








The Knockdown/knockout RNA-Seq assay for ROGDI is not available on ENCORE database.





88 RBPs can affect the gene expression of ROGDI :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ROGDIENSG00000067836.8985.52720768.945100.357902.159901.32530HepG2ABCF1
ROGDIENSG00000067836.8334.24530446.44300-0.417603.167202.52300HepG2ACO1
ROGDIENSG00000067836.8769.56660426.022100.853008.480707.15740HepG2ASCC1
ROGDIENSG00000067836.8438.11910561.87800-0.358902.470101.81440HepG2AUH
ROGDIENSG00000067836.8438.43730270.895700.694503.575802.51150HepG2BCCIP
ROGDIENSG00000067836.8787.33390576.089300.450603.498702.12330HepG2BUD13
ROGDIENSG00000067836.81023.25710620.994200.720403.300502.22760HepG2CCAR1
ROGDIENSG00000067836.8366.95140559.74230-0.609204.339703.49470HepG2CPSF6
ROGDIENSG00000067836.8390.85870266.358400.553202.309501.59670HepG2DDX55
ROGDIENSG00000067836.8620.69170427.105000.539204.527803.69840HepG2DKC1
ROGDIENSG00000067836.8439.40510266.594100.720806.865605.79820HepG2DNAJC21
ROGDIENSG00000067836.8438.57450264.266200.730708.330907.27520HepG2DNAJC2
ROGDIENSG00000067836.8700.40230421.275000.733306.068605.10030HepG2G3BP1
ROGDIENSG00000067836.8369.98230243.636800.602603.513202.49230HepG2GEMIN5
ROGDIENSG00000067836.81233.44390634.529800.9588011.8340010.59010HepG2GPKOW
ROGDIENSG00000067836.8566.88410269.148401.0746012.2079011.00740HepG2HNRNPA1
ROGDIENSG00000067836.8572.98900445.414200.363302.627501.92830HepG2HNRNPF
ROGDIENSG00000067836.81069.43900605.541800.820509.575508.48530HepG2HNRNPLL
ROGDIENSG00000067836.8584.67160297.406600.9751011.5971010.42790HepG2HNRNPU
ROGDIENSG00000067836.8596.56340438.603500.443702.835102.10170HepG2IGF2BP1
ROGDIENSG00000067836.8620.99070428.170400.536303.622302.85940HepG2IGF2BP2
ROGDIENSG00000067836.8408.48270303.789500.427103.377602.57380HepG2ILF2
ROGDIENSG00000067836.8376.03930250.273800.587303.036701.77690HepG2KHDRBS1
ROGDIENSG00000067836.8707.21200467.667000.596604.260403.48040HepG2NCBP2
ROGDIENSG00000067836.8529.23590308.366300.779202.834001.36380HepG2NOLC1
ROGDIENSG00000067836.8150.05720239.91750-0.677002.462601.63510HepG2PABPC1
ROGDIENSG00000067836.8348.22630226.312200.621604.088502.58480HepG2PKM
ROGDIENSG00000067836.8345.50090265.261400.381202.125101.47180HepG2PPIL4
ROGDIENSG00000067836.8561.24510429.601500.385502.911402.35290HepG2PTBP1
ROGDIENSG00000067836.8636.84120454.719900.485905.137604.34530HepG2PUS1
ROGDIENSG00000067836.8662.87780465.249400.510604.519403.74830HepG2QKI
ROGDIENSG00000067836.8534.83950241.645401.146103.390701.36450HepG2RBM17
ROGDIENSG00000067836.8431.66070539.22430-0.321002.015001.55450HepG2RBM22
ROGDIENSG00000067836.8774.87130478.097600.696609.082108.20460HepG2NELFE
ROGDIENSG00000067836.8429.38720266.324900.689004.794504.00990HepG2RPS19
ROGDIENSG00000067836.8429.54360287.842100.577403.160702.30470HepG2RPS2
ROGDIENSG00000067836.8525.38990263.724400.994307.732106.41320HepG2RPS3A
ROGDIENSG00000067836.8420.75390264.848600.667706.402605.48320HepG2SAFB2
ROGDIENSG00000067836.8557.78190233.282501.257504.095802.36780HepG2SF1
ROGDIENSG00000067836.8496.94490226.662201.132403.152401.58830HepG2SFPQ
ROGDIENSG00000067836.8455.14310308.849500.559305.334204.49000HepG2SMN1
ROGDIENSG00000067836.8542.16360208.785201.376605.255903.30270HepG2SNRNP200
ROGDIENSG00000067836.8543.11500422.050900.363702.615202.00250HepG2SRSF5
ROGDIENSG00000067836.8544.02550437.612900.313901.966101.36850HepG2SRSF7
ROGDIENSG00000067836.8269.28250379.80760-0.496103.612703.00050HepG2SRSF9
ROGDIENSG00000067836.8862.40310528.738400.7057011.2817010.38180HepG2SSB
ROGDIENSG00000067836.8714.94770480.003100.574707.011506.10070HepG2SUCLG1
ROGDIENSG00000067836.8405.69250265.137500.613502.799202.11920HepG2SUPV3L1
ROGDIENSG00000067836.8586.34360288.953401.0208013.9388012.96540HepG2TIAL1
ROGDIENSG00000067836.8371.65420664.18260-0.837607.725006.67990HepG2U2AF1
ROGDIENSG00000067836.8278.31770156.612500.829404.851703.84090HepG2UCHL5
ROGDIENSG00000067836.8742.21010582.444300.349603.290402.53950HepG2UPF1
ROGDIENSG00000067836.8383.99210242.736900.661602.713001.71740HepG2UPF2
ROGDIENSG00000067836.8560.67680260.999401.103009.866408.51570HepG2XRN2
ROGDIENSG00000067836.8602.22550436.769600.463304.665903.83100HepG2ZC3H8
ROGDIENSG00000067836.8169.64220302.92190-0.836505.066104.31490K562AQR
ROGDIENSG00000067836.8365.77520512.94990-0.487903.134002.15800K562ATP5C1
ROGDIENSG00000067836.8360.04610214.136000.749605.096203.56630K562CCAR1
ROGDIENSG00000067836.8137.73410269.16810-0.966604.008501.71060K562DAZAP1
ROGDIENSG00000067836.8433.63430285.379700.603504.404102.85390K562DDX21
ROGDIENSG00000067836.899.35120159.99550-0.687403.028401.63840K562DDX27
ROGDIENSG00000067836.8533.57370371.644200.521704.845604.01720K562DDX47
ROGDIENSG00000067836.8223.43980138.003600.695102.923301.98560K562EFTUD2
ROGDIENSG00000067836.8113.07080180.95510-0.678402.988902.13800K562EIF4A3
ROGDIENSG00000067836.8348.25210185.767700.906507.774005.60890K562EXOSC5
ROGDIENSG00000067836.8113.61950191.84140-0.755703.215201.98330K562FKBP4
ROGDIENSG00000067836.816.5722069.34420-2.065003.321502.53310K562G3BP2
ROGDIENSG00000067836.8423.84320275.366100.622104.225203.24960K562GPKOW
ROGDIENSG00000067836.8441.85490335.865200.395602.285901.33530K562HNRNPL
ROGDIENSG00000067836.8665.04780373.781500.831208.359006.98760K562HSPD1
ROGDIENSG00000067836.8435.12630581.21480-0.417602.745401.84120K562MBNL1
ROGDIENSG00000067836.8237.28390356.65450-0.587902.619401.83150K562MTPAP
ROGDIENSG00000067836.8275.27890429.11600-0.640504.341802.44520K562NOL12
ROGDIENSG00000067836.8499.82970396.279300.334802.366801.67250K562NSUN2
ROGDIENSG00000067836.8719.91000308.609801.221907.958305.87830K562PABPC1
ROGDIENSG00000067836.8305.68730215.741200.502702.891001.43070K562PHF6
ROGDIENSG00000067836.8383.59400198.129000.953002.657901.77450K562PSIP1
ROGDIENSG00000067836.8330.30140455.30970-0.463102.976001.86520K562PUM1
ROGDIENSG00000067836.8330.13260484.83900-0.554503.325102.73830K562PUS1
ROGDIENSG00000067836.8292.07140180.764300.692104.068702.86390K562RCC2
ROGDIENSG00000067836.8218.18460136.746400.673902.103101.39530K562RPS19
ROGDIENSG00000067836.8228.33510142.816800.676902.566601.60570K562RPS3
ROGDIENSG00000067836.8305.02340161.501900.917306.544604.88700K562SAFB
ROGDIENSG00000067836.8508.54310391.020400.379002.585901.79680K562SF3A3
ROGDIENSG00000067836.8121.8895071.950600.760402.505301.69370K562SF3B4
ROGDIENSG00000067836.8584.04450361.289000.692802.744901.45390K562SFPQ
ROGDIENSG00000067836.8289.96500171.360000.758704.486403.09430K562SRFBP1
ROGDIENSG00000067836.8265.28420400.60830-0.594704.909703.70730K562SRPK2
ROGDIENSG00000067836.8245.87940137.885500.834404.382203.00840K562SRSF4
ROGDIENSG00000067836.8247.16410361.72810-0.549403.107301.65630K562SSRP1
ROGDIENSG00000067836.8253.86870181.796300.481702.267801.52360K562SYNCRIP
ROGDIENSG00000067836.8229.39660125.317100.872205.051804.08030K562TARDBP
ROGDIENSG00000067836.8202.82690120.887000.746503.696202.73260K562TIA1
ROGDIENSG00000067836.8332.66840190.567300.803705.069403.76640K562TIAL1
ROGDIENSG00000067836.8377.59240202.450000.899207.086105.41680K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ROGDI is not available on ENCORE database.





7 RBPs can affect the splicing of ROGDI :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEROGDIENSG00000067836.8chr16-4851267485132248504984850579485150348515860.266000.000680.05807includedHepG2G3BP1
SEROGDIENSG00000067836.8chr16-4851267485132248504984850579485150348515860.272000.000380.02943includedHepG2AKAP1
SEROGDIENSG00000067836.8chr16-485126748513224850498485057948515034851586-0.280000.001030.04714excludedHepG2SF3B4
SEROGDIENSG00000067836.8chr16-485126748513224850498485057948515034851586-0.398000.000500.02018excludedK562UTP18
SEROGDIENSG00000067836.8chr16-485126748513224850498485057948515034851586-0.296000.000010.00419excludedK562NPM1
SEROGDIENSG00000067836.8chr16-485126748513224850498485057948515034851586-0.611000.000000.00003excludedK562HNRNPC
A3SSROGDIENSG00000067836.8chr16-4849686484981748496864849782485049848505790.171000.004440.08746longerHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ROGDI is not avaliable on ENCORE database.