CDHR2

General Information

Gene Name       : CDHR2
Gene ID             : ENSG00000074276.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CDHR2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CDHR2ENSG00000074276.100.000.000.00ENCSR000AEF
HepG2CDHR2ENSG00000074276.1026.5215.4821.00ENCSR985KAT
K562CDHR2ENSG00000074276.100.030.010.02ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CDHR2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CDHR2 RNA is bound by 15 proteins.  







eCLIP assay for CDHR2 is not avaliable on ENCORE database.





15 proteins are bound to CDHR2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5175992338175992408+3'-UTR,5'-UTR,CDS,intron-Proximal6.2855111.95715HepG2DDX3X
chr5175976322175976416+5'-UTR,intron-Distal,intron-Proximal4.370914.61711HepG2NCBP2
chr5175976334175976416+5'-UTR,intron-Distal,intron-Proximal5.1371213.15062HepG2DDX3X
chr5176019721176019761+CDS,intron-Proximal3.264547.62281HepG2PABPN1
chr5176002404176002423+CDS4.205183.20743HepG2PPIG
chr5176016182176016233+CDS,intron-Proximal3.015076.19957HepG2PRPF8
chr5176018444176018486+CDS,intron-Proximal3.092875.75023HepG2PABPN1
chr5175992730175992780+CDS,intron-Proximal5.230268.72621HepG2PRPF8
chr5176011236176011257+CDS3.006973.73413HepG2PPIG
chr5176012012176012063+CDS,intron-Proximal4.196949.08333HepG2PRPF8
chr5176017174176017260+CDS,intron-Proximal4.849318.79061HepG2EFTUD2
chr5176002562176002637+CDS,intron-Proximal4.6444410.76264HepG2PRPF8
chr5176018218176018283+CDS3.534374.24574HepG2PABPN1
chr5176004498176004551+CDS3.705876.98305HepG2PPIG
chr5175998182175998244+CDS,intron-Proximal4.277343.77802HepG2U2AF2
chr5176002188176002263+CDS,intron-Proximal3.2644211.20046HepG2PRPF8
chr5176017462176017523+CDS,intron-Proximal3.967236.95612HepG2PRPF8
chr5176018403176018444+CDS,intron-Proximal3.174133.90015HepG2PABPN1
chr5176002458176002524+CDS,intron-Proximal5.287886.68817HepG2EFTUD2
chr5176022532176022565+CDS,intron-Proximal3.058824.63930HepG2PABPN1
chr5176012845176012919+intron-Distal,intron-Proximal3.413158.70001HepG2PRPF8
chr5176004078176004193+intron-Distal4.771016.75874HepG2PRPF4
chr5175983773175983810+intron-Distal4.498814.07467K562TROVE2
chr5176003262176003357+intron-Distal,intron-Proximal3.179844.68402HepG2CSTF2T
chr5176012834176012919+intron-Distal,intron-Proximal3.616615.38982HepG2PRPF4
chr5176003260176003365+intron-Distal,intron-Proximal4.342153.30705HepG2GTF2F1
chr5176003270176003341+intron-Distal,intron-Proximal3.855476.29610HepG2RBFOX2
chr5176003200176003342+intron-Distal,intron-Proximal3.671836.24931HepG2PRPF4
chr5176012720176012845+intron-Distal7.2272641.41933HepG2RBFOX2
chr5176012845176012908+intron-Distal,intron-Proximal6.6547629.27266HepG2RBFOX2
chr5176012842176012942+intron-Distal,intron-Proximal4.357987.83068HepG2SF3B4
chr5176003220176003348+intron-Distal,intron-Proximal4.149118.13631HepG2EFTUD2
chr5175977022175977123+intron-Distal4.659536.11036HepG2XPO5
chr5176012771176012919+intron-Distal,intron-Proximal3.836805.82900HepG2GTF2F1
chr5176003217176003255+intron-Proximal4.173335.90868HepG2PRPF8
chr5176002216176002278+intron-Proximal4.258534.82767HepG2SF3B4
chr5176003214176003271+intron-Proximal3.748184.06602HepG2FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CDHR2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CDHR2 is not available on ENCORE database.

  • 106 RBPs can affect the levels of CDHR2.  








The Knockdown/knockout RNA-Seq assay for CDHR2 is not available on ENCORE database.





106 RBPs can affect the gene expression of CDHR2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CDHR2ENSG00000074276.6330.60740659.82300-0.9970011.468409.49240HepG2AATF
CDHR2ENSG00000074276.6675.24350929.74000-0.461402.901701.93700HepG2ABCF1
CDHR2ENSG00000074276.6615.21250791.00270-0.362603.677902.99550HepG2ACO1
CDHR2ENSG00000074276.61054.67940538.678400.9692012.6159010.70930HepG2ADAR
CDHR2ENSG00000074276.6751.540701264.40810-0.750507.067606.26000HepG2AKAP1
CDHR2ENSG00000074276.61076.23770747.866200.525003.778502.56680HepG2AKAP8
CDHR2ENSG00000074276.61532.830701046.138000.551004.253203.28850HepG2ASCC1
CDHR2ENSG00000074276.61537.320701132.167600.441206.969105.95910HepG2AUH
CDHR2ENSG00000074276.61294.58940587.743801.139108.397206.94240HepG2BCLAF1
CDHR2ENSG00000074276.6478.81130602.76500-0.332101.853301.35530HepG2BOP1
CDHR2ENSG00000074276.61385.72020696.304100.992709.215207.11260HepG2BUD13
CDHR2ENSG00000074276.62078.13360993.920401.0640018.6136016.81650HepG2CIRBP
CDHR2ENSG00000074276.6265.36770663.57830-1.322301.936701.30170HepG2CNOT7
CDHR2ENSG00000074276.61163.48190552.416401.0745024.9182022.24890HepG2YBX3
CDHR2ENSG00000074276.61265.90630823.218300.620709.541608.48390HepG2CELF1
CDHR2ENSG00000074276.61187.39760884.952000.424004.949103.99840HepG2DAZAP1
CDHR2ENSG00000074276.61093.96870731.538800.5805010.981809.54160HepG2DDX19B
CDHR2ENSG00000074276.6438.45950727.32580-0.730207.544606.48090HepG2DDX21
CDHR2ENSG00000074276.61399.84590949.003200.560706.162404.27370HepG2DDX47
CDHR2ENSG00000074276.61725.59350665.312101.3749016.3099014.64960HepG2DDX55
CDHR2ENSG00000074276.61354.56540628.385501.108003.334702.26350HepG2DDX59
CDHR2ENSG00000074276.61141.06670697.821400.709406.757505.23460HepG2DDX5
CDHR2ENSG00000074276.61772.979501040.624200.768608.266507.25240HepG2DDX6
CDHR2ENSG00000074276.61059.28510523.160401.0177013.7093011.77460HepG2DHX30
CDHR2ENSG00000074276.61691.14730756.761001.1600038.4060036.65200HepG2DKC1
CDHR2ENSG00000074276.6763.81960542.408500.493803.592802.79770HepG2DNAJC21
CDHR2ENSG00000074276.6699.14040537.652300.378803.571802.84840HepG2DNAJC2
CDHR2ENSG00000074276.61421.479601000.108500.507104.310503.57980HepG2EIF2S1
CDHR2ENSG00000074276.6291.47620668.05070-1.1966014.1285012.26630HepG2EIF3D
CDHR2ENSG00000074276.6870.639201105.10740-0.344002.000001.45370HepG2EIF4A3
CDHR2ENSG00000074276.6805.546301076.22530-0.417902.166701.55550HepG2EIF4B
CDHR2ENSG00000074276.61918.04710836.475801.1971020.2633018.22360HepG2EIF4G2
CDHR2ENSG00000074276.6354.06790772.90200-1.1263017.9996016.00800HepG2EWSR1
CDHR2ENSG00000074276.6396.32100693.40250-0.807009.152307.28800HepG2FASTKD2
CDHR2ENSG00000074276.6568.51040938.74150-0.723505.532204.47990HepG2FIP1L1
CDHR2ENSG00000074276.61195.01510921.823600.374403.021802.20380HepG2FUBP3
CDHR2ENSG00000074276.6706.074201115.40050-0.659706.495505.45980HepG2FXR1
CDHR2ENSG00000074276.62275.098301098.514801.0503018.4396016.20550HepG2G3BP2
CDHR2ENSG00000074276.61705.40410678.255901.3301023.0151020.18390HepG2GNB2L1
CDHR2ENSG00000074276.61623.08680627.250501.3715023.7835022.11140HepG2GPKOW
CDHR2ENSG00000074276.61262.97560755.147600.741908.568106.96280HepG2HDGF
CDHR2ENSG00000074276.6373.66790705.70380-0.917305.545503.52170HepG2HLTF
CDHR2ENSG00000074276.6405.28140547.60520-0.434202.508001.88980HepG2HNRNPA1
CDHR2ENSG00000074276.61201.80900813.397500.563109.600508.05850HepG2HNRNPA2B1
CDHR2ENSG00000074276.6385.88080598.59920-0.633404.736703.93570HepG2HNRNPLL
CDHR2ENSG00000074276.6477.50220647.48940-0.439302.966401.98130HepG2HNRNPM
CDHR2ENSG00000074276.61069.13820605.092700.8211017.4093015.99000HepG2HNRNPU
CDHR2ENSG00000074276.61105.55490814.120600.441402.551101.37430HepG2HSPD1
CDHR2ENSG00000074276.61282.47440947.894500.436004.921803.98250HepG2IGF2BP1
CDHR2ENSG00000074276.6184.19820987.04960-2.4219017.4258015.23070HepG2IGF2BP3
CDHR2ENSG00000074276.61152.16350647.129900.832103.024201.63170HepG2ILF3
CDHR2ENSG00000074276.61881.720601057.730200.831008.363906.53670HepG2KHSRP
CDHR2ENSG00000074276.61364.16580723.041300.9158028.0360025.29980HepG2KIF1C
CDHR2ENSG00000074276.61425.45850813.568100.809007.125305.15290HepG2KRR1
CDHR2ENSG00000074276.6848.006201148.34930-0.437403.133602.46180HepG2NCBP2
CDHR2ENSG00000074276.6881.34070530.792600.731505.528704.48990HepG2NSUN2
CDHR2ENSG00000074276.61628.58370606.891401.4240011.564709.72160HepG2PABPC1
CDHR2ENSG00000074276.6754.316801022.44090-0.438803.076902.31730HepG2PABPC4
CDHR2ENSG00000074276.6377.86230598.92430-0.664507.715006.41470HepG2PARN
CDHR2ENSG00000074276.61175.66510752.203900.644205.048902.71570HepG2PES1
CDHR2ENSG00000074276.6969.86230539.692400.8455011.8470010.38370HepG2PPIL4
CDHR2ENSG00000074276.61096.66790712.367800.6223010.312008.95620HepG2PRPF4
CDHR2ENSG00000074276.6729.855101118.02100-0.6153010.453109.52150HepG2PTBP1
CDHR2ENSG00000074276.63350.91520837.735301.9999036.7083034.84520HepG2PUF60
CDHR2ENSG00000074276.61302.99830888.669100.552007.867606.76250HepG2PUM2
CDHR2ENSG00000074276.6575.98270805.67950-0.484206.097905.24700HepG2PUS1
CDHR2ENSG00000074276.61114.84470671.414300.731504.188303.32980HepG2RAVER1
CDHR2ENSG00000074276.61231.14680891.224600.466005.094303.97420HepG2RBM15
CDHR2ENSG00000074276.6460.531901086.45050-1.2382028.4712027.15730HepG2RBM22
CDHR2ENSG00000074276.6383.72820650.91510-0.762404.559803.19560HepG2RCC2
CDHR2ENSG00000074276.6788.553401244.29090-0.658007.465906.65410HepG2NELFE
CDHR2ENSG00000074276.61001.290601158.81390-0.210801.819601.30470HepG2RECQL
CDHR2ENSG00000074276.6980.83280659.952700.571503.334602.29690HepG2RPS10
CDHR2ENSG00000074276.6917.24020650.127600.496504.460803.69960HepG2RPS19
CDHR2ENSG00000074276.6322.15380507.20740-0.654802.336301.60740HepG2RRP9
CDHR2ENSG00000074276.61830.45390538.855301.7641095.6634092.95070HepG2SAFB2
CDHR2ENSG00000074276.6878.75560652.370100.429702.929801.96010HepG2SERBP1
CDHR2ENSG00000074276.6843.02390366.612401.201204.053402.33900HepG2SF1
CDHR2ENSG00000074276.6410.89730910.94210-1.1486012.5183011.02270HepG2SF3A3
CDHR2ENSG00000074276.6775.710101164.09220-0.585608.107407.17790HepG2SF3B4
CDHR2ENSG00000074276.61292.51930803.397300.6859016.1668014.72970HepG2SLBP
CDHR2ENSG00000074276.6713.98770327.774101.123103.948802.31630HepG2SNRNP200
CDHR2ENSG00000074276.61612.43560659.242601.2903014.5939012.81970HepG2SNRNP70
CDHR2ENSG00000074276.6561.226201227.11090-1.1286033.0104031.77890HepG2SRFBP1
CDHR2ENSG00000074276.6791.324201215.02430-0.6186010.9162010.11170HepG2SRSF1
CDHR2ENSG00000074276.62631.18550827.223201.6693097.8756095.00840HepG2SRSF5
CDHR2ENSG00000074276.61210.39860945.723100.355904.280903.44370HepG2SRSF7
CDHR2ENSG00000074276.61962.55480988.456100.9894035.2208033.67780HepG2SRSF9
CDHR2ENSG00000074276.61901.859201065.431500.8359025.5328024.32730HepG2SSB
CDHR2ENSG00000074276.61002.42330626.723400.677504.438302.90410HepG2STAU1
CDHR2ENSG00000074276.61016.10980581.051900.806202.448301.42190HepG2STIP1
CDHR2ENSG00000074276.6667.21890940.71080-0.495604.250003.50870HepG2SUCLG1
CDHR2ENSG00000074276.61249.01350821.247800.604802.999501.61750HepG2SUGP2
CDHR2ENSG00000074276.62308.79390662.177901.8017037.0049035.08530HepG2SUPV3L1
CDHR2ENSG00000074276.62079.336301092.011600.929006.793405.98330HepG2TAF15
CDHR2ENSG00000074276.61972.05550796.919401.307109.593707.74040HepG2TBRG4
CDHR2ENSG00000074276.6954.28750587.918900.698709.707008.87010HepG2TIAL1
CDHR2ENSG00000074276.61665.28950593.219301.4890050.6455048.63470HepG2TRIM56
CDHR2ENSG00000074276.61355.46400818.543100.727604.295103.17750HepG2TUFM
CDHR2ENSG00000074276.6496.84460802.84970-0.692306.542405.59110HepG2U2AF1
CDHR2ENSG00000074276.61650.38450866.488100.929506.256704.96840HepG2UBE2L3
CDHR2ENSG00000074276.61412.10700807.869100.8056020.6600019.09810HepG2UPF1
CDHR2ENSG00000074276.6446.11190779.96170-0.8060012.5224011.38880HepG2UTP3
CDHR2ENSG00000074276.6308.43220738.60170-1.2598010.819808.88130HepG2XRCC6
CDHR2ENSG00000074276.61158.07460651.845400.829004.588203.66330HepG2XRN2
CDHR2ENSG00000074276.61530.57270888.497500.7845023.6248022.41780HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CDHR2 is not available on ENCORE database.





3 RBPs can affect the splicing of CDHR2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECDHR2ENSG00000074276.6chr5+176005034176005096176004637176004799176005365176005609-0.299000.002670.04598excludedHepG2U2AF1
SECDHR2ENSG00000074276.6chr5+1759939461759941151759926721759927441759956781759957680.243000.000070.00280includedHepG2HNRNPK
A5SSCDHR2ENSG00000074276.6chr5+176016528176016617176016528176016588176017078176017147-0.159000.000180.02465shorterHepG2PCBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CDHR2 is not avaliable on ENCORE database.