POLR2J

General Information

Gene Name       : POLR2J
Gene ID             : ENSG00000005075.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: POLR2J)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POLR2JENSG00000005075.1552.9381.2467.08ENCSR000AEF
HepG2POLR2JENSG00000005075.1575.0360.6867.86ENCSR985KAT
K562POLR2JENSG00000005075.15166.56147.94157.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POLR2J is not avaliable on ENCORE database.



Proteins bound to RNA
  • POLR2J RNA is bound by 12 proteins.  







eCLIP assay for POLR2J is not avaliable on ENCORE database.





12 proteins are bound to POLR2J RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr7102114011102114114-3'-UTR,CDS,intron-Distal4.3556917.94219HepG2LARP4
chr7102114007102114059-3'-UTR,intron-Distal4.1912919.36001K562YBX3
chr7102114084102114100-3'-UTR,CDS,intron-Distal3.174605.95282K562YBX3
chr7102113923102113999-3'-UTR,intron-Distal6.75443400.00000K562PUM2
chr7102113943102113997-3'-UTR,intron-Distal5.081987.26512HepG2LARP4
chr7102114059102114084-3'-UTR,intron-Distal4.0275012.43828K562YBX3
chr7102114026102114104-3'-UTR,CDS,intron-Distal3.4769912.91403K562PABPC4
chr7102114056102114132-3'-UTR,CDS,intron-Distal3.835154.73981K562METAP2
chr7102119308102119355-5'-UTR,intron-Distal,intron-Proximal3.896473.52436K562DROSHA
chr7102119307102119352-5'-UTR,intron-Distal,intron-Proximal4.239015.48791HepG2DDX3X
chr7102119300102119352-5'-UTR,CDS,intron-Distal,intron-Proximal3.702893.59926K562DDX3X
chr7102119311102119353-5'-UTR,intron-Distal,intron-Proximal3.875883.75919K562EIF3G
chr7102119310102119345-5'-UTR,intron-Distal4.492714.08666K562NCBP2
chr7102114822102114867-CDS,intron-Distal4.3350519.37543K562YBX3
chr7102114806102114855-CDS,intron-Distal,intron-Proximal4.512214.32860K562METAP2
chr7102114124102114131-CDS,intron-Distal3.359286.18351K562YBX3
chr7102114805102114834-CDS,intron-Distal,intron-Proximal3.484784.03691K562PUM1
chr7102114779102114838-CDS,intron-Distal,intron-Proximal4.315225.34978HepG2PRPF8
chr7102114807102114822-CDS,intron-Distal,intron-Proximal4.5918918.91654K562YBX3
chr7102114103102114182-CDS,intron-Distal4.502794.59919HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POLR2J is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POLR2J is not available on ENCORE database.

  • 75 RBPs can affect the levels of POLR2J.  








The Knockdown/knockout RNA-Seq assay for POLR2J is not available on ENCORE database.





75 RBPs can affect the gene expression of POLR2J :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POLR2JENSG00000005075.111683.974601305.954800.366702.282401.42270HepG2ABCF1
POLR2JENSG00000005075.11285.43800535.72190-0.9083013.1114011.99240HepG2ACO1
POLR2JENSG00000005075.11617.71950763.07710-0.304902.418301.76780HepG2AUH
POLR2JENSG00000005075.11766.46440491.806200.640004.520803.32140HepG2BCCIP
POLR2JENSG00000005075.11942.298101214.96370-0.366702.924102.13340HepG2CALR
POLR2JENSG00000005075.11740.163601356.02330-0.873505.788604.82760HepG2CPSF6
POLR2JENSG00000005075.11294.23650455.23750-0.629603.414101.84550HepG2CSTF2T
POLR2JENSG00000005075.11484.61780629.80950-0.378102.025001.50850HepG2EIF2S1
POLR2JENSG00000005075.11514.02320801.83890-0.641505.420504.33060HepG2FUBP3
POLR2JENSG00000005075.11608.05650457.995500.408802.558801.70250HepG2GEMIN5
POLR2JENSG00000005075.111117.013301537.20700-0.460703.477902.76630HepG2GPKOW
POLR2JENSG00000005075.11726.40200572.005400.344602.140801.56560HepG2HNRNPA1
POLR2JENSG00000005075.11516.40780659.79750-0.353501.985001.38650HepG2HNRNPK
POLR2JENSG00000005075.11678.30550384.532600.818704.417902.41590HepG2PA2G4
POLR2JENSG00000005075.11416.25510643.90650-0.629404.705203.77490HepG2PABPC4
POLR2JENSG00000005075.11591.41630425.389400.475303.800202.35160HepG2PKM
POLR2JENSG00000005075.11408.24610720.39280-0.8193012.5067011.50930HepG2PTBP1
POLR2JENSG00000005075.11877.85190720.326100.285203.074402.45740HepG2PUM1
POLR2JENSG00000005075.11392.49010780.17170-0.9911015.2675013.96820HepG2QKI
POLR2JENSG00000005075.11375.74310548.87470-0.546702.157401.52950HepG2RAVER1
POLR2JENSG00000005075.111492.86040543.842801.456705.614302.94380HepG2RBM17
POLR2JENSG00000005075.11476.24650708.06790-0.572205.214804.31610HepG2RBM25
POLR2JENSG00000005075.11602.36550801.71570-0.412503.841403.22400HepG2NELFE
POLR2JENSG00000005075.11541.56110746.71150-0.463404.649503.87920HepG2RECQL
POLR2JENSG00000005075.11912.06670500.534600.8656011.8062010.64200HepG2RPS19
POLR2JENSG00000005075.11705.28760562.868400.325302.816202.16760HepG2SAFB2
POLR2JENSG00000005075.11918.93820502.348200.8712010.178808.42460HepG2SERBP1
POLR2JENSG00000005075.111251.46260526.140001.250003.186501.70190HepG2SF1
POLR2JENSG00000005075.11575.71220749.99540-0.381503.415502.76710HepG2SF3B4
POLR2JENSG00000005075.111199.19980469.149201.353905.762903.68970HepG2SNRNP200
POLR2JENSG00000005075.11660.75320827.08370-0.323903.008202.49270HepG2SRFBP1
POLR2JENSG00000005075.11625.62800782.84360-0.323402.778602.30480HepG2SRSF1
POLR2JENSG00000005075.11360.22140636.89430-0.8222012.1266011.11500HepG2SRSF9
POLR2JENSG00000005075.11405.63870703.68030-0.7947010.606109.62180HepG2TAF15
POLR2JENSG00000005075.11481.49350646.55460-0.425303.307302.39780HepG2TIA1
POLR2JENSG00000005075.111345.99940547.145401.298603.832102.65910HepG2U2AF2
POLR2JENSG00000005075.11494.51290922.04520-0.8988018.3593016.86600HepG2UPF1
POLR2JENSG00000005075.111109.70560890.201400.317903.374102.72470HepG2UTP3
POLR2JENSG00000005075.11787.30540473.852800.732406.462205.36940HepG2XRN2
POLR2JENSG00000005075.113105.929602061.266200.5914016.2390014.98370K562AGGF1
POLR2JENSG00000005075.112879.954202265.011500.346403.386702.27500K562AKAP8
POLR2JENSG00000005075.111835.817801260.945400.541803.387302.19570K562CCAR1
POLR2JENSG00000005075.112492.107402912.74830-0.225002.475801.43300K562CPEB4
POLR2JENSG00000005075.112842.782803816.75580-0.425006.124704.96270K562CPSF6
POLR2JENSG00000005075.112062.234101411.721300.546704.492502.73100K562DHX30
POLR2JENSG00000005075.112698.591602308.013400.225502.525501.69330K562DKC1
POLR2JENSG00000005075.111881.812501282.561300.553003.371002.25150K562EIF3A
POLR2JENSG00000005075.11846.25240650.796700.378803.175501.77500K562EWSR1
POLR2JENSG00000005075.111150.05280775.357000.568708.276907.30050K562FXR1
POLR2JENSG00000005075.11876.78190639.454200.455303.953802.21590K562G3BP1
POLR2JENSG00000005075.11302.92400599.19980-0.984104.414003.47670K562G3BP2
POLR2JENSG00000005075.111303.367201595.25380-0.291502.380101.82030K562HNRNPC
POLR2JENSG00000005075.113076.352602340.587200.394303.104102.11400K562HNRNPM
POLR2JENSG00000005075.11941.13660669.159600.492003.197502.06610K562IGF2BP2
POLR2JENSG00000005075.112735.900202276.217400.265302.421301.65640K562KIF1C
POLR2JENSG00000005075.112259.348501618.305700.481304.896602.83440K562LIN28B
POLR2JENSG00000005075.11900.17130702.911000.356802.753601.91590K562MAGOH
POLR2JENSG00000005075.11944.02340701.431800.428403.889102.77960K562MATR3
POLR2JENSG00000005075.111266.74090783.103600.693707.837006.56850K562PRPF8
POLR2JENSG00000005075.111875.050601430.358600.390503.576402.52990K562PSIP1
POLR2JENSG00000005075.113075.554602127.106800.531902.525002.00090K562PUS1
POLR2JENSG00000005075.112864.864702072.532500.467005.228704.43650K562RBM15
POLR2JENSG00000005075.11858.28610654.674800.390602.888202.02560K562RBM22
POLR2JENSG00000005075.111671.263301305.240900.356503.524402.40760K562RCC2
POLR2JENSG00000005075.111074.32500797.671100.429502.755301.94150K562RPS19
POLR2JENSG00000005075.111103.30390800.682100.462402.723201.40510K562RRP9
POLR2JENSG00000005075.112734.139001922.663700.507906.957505.25160K562SAFB
POLR2JENSG00000005075.112497.758101987.728900.329402.734101.30220K562SDAD1
POLR2JENSG00000005075.11990.86710670.106600.564203.485801.71640K562SERBP1
POLR2JENSG00000005075.111986.879301237.310200.683209.881907.61250K562SRFBP1
POLR2JENSG00000005075.11908.67030669.556100.440503.863103.03370K562SRSF1
POLR2JENSG00000005075.11823.08240632.442400.380002.694201.66280K562SRSF5
POLR2JENSG00000005075.112903.079003733.88410-0.363103.447901.90430K562SSRP1
POLR2JENSG00000005075.113040.885902164.216200.490502.827801.99860K562SYNCRIP
POLR2JENSG00000005075.111054.33580677.549900.637806.607305.47180K562TARDBP
POLR2JENSG00000005075.11855.42950653.595600.388203.074902.20380K562TIA1
POLR2JENSG00000005075.111851.088001375.738600.428103.488602.43210K562TIAL1
POLR2JENSG00000005075.11841.11470641.571800.390602.752101.66400K562TRA2A
POLR2JENSG00000005075.111971.092401461.794300.431204.482703.21400K562TRIM56
POLR2JENSG00000005075.112420.956503329.30720-0.459604.782802.83890K562TRIP6
POLR2JENSG00000005075.112776.846703815.97290-0.458602.445801.32290K562UTP3
POLR2JENSG00000005075.113029.589702301.012000.396804.448602.14150K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POLR2J is not available on ENCORE database.






No RBPs affect the alternative splcing events of POLR2J on ENCORE database.





The Knockdown/knockout RNA-Seq assay for POLR2J is not avaliable on ENCORE database.