DBNDD1

General Information

Gene Name       : DBNDD1
Gene ID             : ENSG00000003249.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: DBNDD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DBNDD1ENSG00000003249.130.440.620.53ENCSR000AEF
HepG2DBNDD1ENSG00000003249.1325.6614.2619.96ENCSR985KAT
K562DBNDD1ENSG00000003249.139.327.368.34ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for DBNDD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • DBNDD1 RNA is bound by 14 proteins.  







eCLIP assay for DBNDD1 is not avaliable on ENCORE database.





14 proteins are bound to DBNDD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr169007191090071971-3'-UTR,intron-Distal4.046283.72123HepG2AKAP1
chr169007229790072399-3'-UTR,intron-Distal5.037118.28148HepG2UPF1
chr169007256490072601-3'-UTR,intron-Distal,intron-Proximal4.276494.49605HepG2UPF1
chr169007147590071537-3'-UTR,intron-Distal4.660676.18721HepG2IGF2BP3
chr169007574890075823-3'-UTR,CDS,intron-Distal5.436755.29846HepG2DDX3X
chr169007130990071371-3'-UTR,intron-Distal3.987673.51820HepG2PCBP2
chr169007131790071394-3'-UTR,intron-Distal3.430703.01032HepG2LARP4
chr169007202490072095-3'-UTR,intron-Distal4.108386.14808K562UPF1
chr169007180190071871-3'-UTR,intron-Distal3.302663.91938K562UPF1
chr169007147990071567-3'-UTR,intron-Distal3.359353.20150HepG2AKAP1
chr169007137690071417-3'-UTR,intron-Distal3.364093.37083K562UPF1
chr169007130490071384-3'-UTR,intron-Distal4.131973.31904K562IGF2BP1
chr169007239990072454-3'-UTR,intron-Distal4.789726.71037HepG2UPF1
chr169007145790071565-3'-UTR,intron-Distal3.225913.29582HepG2IGF2BP1
chr169007178790071855-3'-UTR,intron-Distal4.786806.96152HepG2UPF1
chr169007203890072135-3'-UTR,intron-Distal3.465103.92922HepG2AKAP1
chr169007159790071659-3'-UTR,intron-Distal3.239963.50315HepG2UPF1
chr169007157390071675-3'-UTR,intron-Distal4.748575.76220K562FAM120A
chr169007583990075905-5'-UTR,CDS,intron-Distal,intron-Proximal4.128264.07325HepG2SF3B4
chr169008577390085857-5'-UTR,intron-Distal4.973758.90399HepG2DDX3X
chr169007498790075039-intron-Distal4.402215.62460K562CSTF2T
chr169007297090073029-intron-Distal4.629085.84605HepG2CSTF2T
chr169007500290075056-intron-Distal3.836603.44758HepG2CSTF2T
chr169007499290075039-intron-Distal4.717875.48218K562FAM120A
chr169008516790085237-intron-Distal4.108093.71567HepG2RBFOX2
chr169008532890085399-intron-Distal4.546153.99130HepG2FAM120A
chr169008516190085217-intron-Distal3.950213.56577HepG2XRN2
chr169007499590075059-intron-Distal4.353933.13028HepG2FAM120A
chr169007452690074581-intron-Distal4.629264.42197K562EWSR1
chr169007453290074579-intron-Distal4.890537.92947HepG2CSTF2T
chr169007434290074392-intron-Distal5.274467.81647HepG2FAM120A
chr169007354190073645-intron-Distal5.141007.60000HepG2CSTF2T
chr169007451490074584-intron-Distal5.6379513.46386HepG2FAM120A
chr169007434590074387-intron-Distal3.313453.48399HepG2CSTF2T
chr169007395390074002-intron-Distal3.291563.00221HepG2CSTF2T
chr169007347690073521-intron-Distal4.277284.61649HepG2CSTF2T
chr169007320990073254-intron-Distal4.756376.58550HepG2CSTF2T
chr169007498990075110-intron-Distal,intron-Proximal4.895094.65580K562GTF2F1
chr169008555590085606-intron-Distal3.090083.04847HepG2CSTF2T
chr169007317790073209-intron-Distal3.893616.03429HepG2CSTF2T
chr169007424690074286-intron-Distal4.163674.10339HepG2CSTF2T
chr169007309990073157-intron-Distal4.349763.16310HepG2CSTF2T
chr169007400990074071-intron-Distal3.452527.70097HepG2CSTF2T
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for DBNDD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for DBNDD1 is not available on ENCORE database.

  • 99 RBPs can affect the levels of DBNDD1.  








The Knockdown/knockout RNA-Seq assay for DBNDD1 is not available on ENCORE database.





99 RBPs can affect the gene expression of DBNDD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
DBNDD1ENSG00000003249.91072.443001413.13050-0.398002.970101.99140HepG2ABCF1
DBNDD1ENSG00000003249.91818.86480848.765301.0995041.9607040.27830HepG2ACO1
DBNDD1ENSG00000003249.91995.901601122.424900.8303010.096708.25030HepG2AKAP8
DBNDD1ENSG00000003249.91235.71120852.650500.535208.591107.33420HepG2AKAP8L
DBNDD1ENSG00000003249.91533.949501222.477100.327302.682902.00620HepG2AUH
DBNDD1ENSG00000003249.9872.45980613.183000.508702.351901.49080HepG2BCCIP
DBNDD1ENSG00000003249.91527.36680993.105900.620907.645506.71110HepG2BOP1
DBNDD1ENSG00000003249.91131.37110848.457600.415106.104405.18740HepG2CKAP4
DBNDD1ENSG00000003249.9331.90970590.48220-0.8311010.126408.24260HepG2YBX3
DBNDD1ENSG00000003249.91895.96770775.425201.2898046.9653044.97900HepG2CELF1
DBNDD1ENSG00000003249.91085.66870784.929600.467807.446906.19130HepG2DDX19B
DBNDD1ENSG00000003249.9404.37110544.89280-0.430302.811101.88880HepG2DDX24
DBNDD1ENSG00000003249.92355.18760602.936501.9657037.5011035.20490HepG2DDX55
DBNDD1ENSG00000003249.91530.87770705.101101.118407.191406.23500HepG2DDX6
DBNDD1ENSG00000003249.9505.18410812.00650-0.684709.796308.68080HepG2DKC1
DBNDD1ENSG00000003249.9766.66820579.792700.403003.759802.94860HepG2DNAJC21
DBNDD1ENSG00000003249.91054.39210574.697100.8754020.0731018.47080HepG2DNAJC2
DBNDD1ENSG00000003249.9885.67880646.430600.454202.571901.49930HepG2EFTUD2
DBNDD1ENSG00000003249.9945.59000629.521900.586904.642103.49400HepG2EIF3D
DBNDD1ENSG00000003249.9921.733001223.94090-0.409103.596902.35940HepG2ESF1
DBNDD1ENSG00000003249.91669.43990829.285901.0093021.0153018.90000HepG2EWSR1
DBNDD1ENSG00000003249.9316.33690913.27770-1.529609.710507.83200HepG2FTO
DBNDD1ENSG00000003249.91191.10840755.732000.656302.745402.05690HepG2FXR1
DBNDD1ENSG00000003249.9803.60140560.482900.519704.039502.94470HepG2GEMIN5
DBNDD1ENSG00000003249.91105.17330810.253100.447704.401203.18830HepG2HDGF
DBNDD1ENSG00000003249.91226.39030766.271000.6784012.1672010.46950HepG2HNRNPA2B1
DBNDD1ENSG00000003249.91615.190801372.414500.234902.506401.82270HepG2HNRNPF
DBNDD1ENSG00000003249.9986.70010759.531300.377404.739803.87450HepG2HNRNPL
DBNDD1ENSG00000003249.91062.91710712.141600.577701.987001.40540HepG2IGF2BP2
DBNDD1ENSG00000003249.91032.16450660.676900.643607.056405.94210HepG2ILF2
DBNDD1ENSG00000003249.91280.47610760.125700.752305.079904.24860HepG2MATR3
DBNDD1ENSG00000003249.91288.74390658.791900.968007.786606.11390HepG2METAP2
DBNDD1ENSG00000003249.91091.71330777.946100.488801.971001.43180HepG2NCBP2
DBNDD1ENSG00000003249.91155.37940553.905401.060606.730705.00630HepG2NONO
DBNDD1ENSG00000003249.9587.28030874.55320-0.574504.856103.87570HepG2NSUN2
DBNDD1ENSG00000003249.9964.19330743.261200.375402.655002.05780HepG2PCBP1
DBNDD1ENSG00000003249.9768.31830576.886800.413303.926103.06360HepG2PPIL4
DBNDD1ENSG00000003249.9688.38910973.29490-0.499706.686405.54250HepG2PRPF4
DBNDD1ENSG00000003249.91333.74460756.388500.8182011.2080010.25110HepG2PTBP1
DBNDD1ENSG00000003249.91258.55300789.235900.673108.727307.74760HepG2PUF60
DBNDD1ENSG00000003249.91522.94640837.801100.8621027.2086025.73780HepG2PUM1
DBNDD1ENSG00000003249.91187.00740837.193900.503604.211903.39390HepG2PUM2
DBNDD1ENSG00000003249.91216.02090568.046701.098006.714505.64210HepG2RAVER1
DBNDD1ENSG00000003249.91857.378401318.148500.494706.560805.31080HepG2RBM15
DBNDD1ENSG00000003249.9840.43770308.891401.443905.276902.69940HepG2RBM17
DBNDD1ENSG00000003249.92076.430701173.219400.8235013.1819012.21860HepG2RBM22
DBNDD1ENSG00000003249.91323.47920841.711000.652808.267107.42230HepG2NELFE
DBNDD1ENSG00000003249.93044.869601478.368701.0423023.7680022.18010HepG2RPLP0
DBNDD1ENSG00000003249.91390.59400612.637201.1825024.9270023.38450HepG2RPS19
DBNDD1ENSG00000003249.9975.18750597.282000.707203.023402.18690HepG2RPS2
DBNDD1ENSG00000003249.9832.38720575.993600.531107.291106.31620HepG2SAFB2
DBNDD1ENSG00000003249.9705.64130298.485801.241204.171502.42710HepG2SF1
DBNDD1ENSG00000003249.91504.559601064.440300.499103.437202.68280HepG2SF3A3
DBNDD1ENSG00000003249.91248.43940787.332300.665008.030107.10400HepG2SF3B4
DBNDD1ENSG00000003249.91378.28940671.697901.0369035.0449033.19810HepG2SMN1
DBNDD1ENSG00000003249.91068.27430581.070500.878404.373903.15170HepG2SMNDC1
DBNDD1ENSG00000003249.9863.31530266.698801.694607.979105.51190HepG2SNRNP200
DBNDD1ENSG00000003249.93073.871901325.051201.2139020.1606019.13280HepG2SRFBP1
DBNDD1ENSG00000003249.9456.10750821.87210-0.849504.761304.18370HepG2SRSF1
DBNDD1ENSG00000003249.91621.90650779.246301.0574033.1760031.34780HepG2SRSF5
DBNDD1ENSG00000003249.91117.25000668.695000.740409.094708.19730HepG2SRSF9
DBNDD1ENSG00000003249.9658.028001150.35880-0.805907.381206.62110HepG2SSB
DBNDD1ENSG00000003249.91047.37980569.813800.878105.126903.58140HepG2STIP1
DBNDD1ENSG00000003249.91545.34530886.225600.8021022.0752020.59190HepG2SUCLG1
DBNDD1ENSG00000003249.91025.39830600.135800.772706.015105.07540HepG2SUPV3L1
DBNDD1ENSG00000003249.9734.17050402.202400.868107.562206.05910HepG2TFIP11
DBNDD1ENSG00000003249.91380.19230628.450701.1349026.8871025.62490HepG2TIAL1
DBNDD1ENSG00000003249.91258.37220634.101000.9887026.7186025.19050HepG2TRIM56
DBNDD1ENSG00000003249.91290.60310771.037600.7431011.029209.09210HepG2TUFM
DBNDD1ENSG00000003249.9620.720501220.43390-0.9754014.0541012.60270HepG2U2AF1
DBNDD1ENSG00000003249.9734.50260310.311401.243004.240703.00660HepG2U2AF2
DBNDD1ENSG00000003249.91418.11160816.122900.797005.564804.35280HepG2UBE2L3
DBNDD1ENSG00000003249.9480.02690354.465300.437402.050601.39740HepG2UCHL5
DBNDD1ENSG00000003249.91374.98760943.997200.5425010.231109.03660HepG2UPF1
DBNDD1ENSG00000003249.91415.63460911.390100.6352010.764109.70680HepG2UTP3
DBNDD1ENSG00000003249.91092.72950625.041700.805804.460003.12870HepG2XRCC6
DBNDD1ENSG00000003249.91247.00310960.516600.376505.328804.44690HepG2ZC3H8
DBNDD1ENSG00000003249.92018.158701038.214300.9588040.1371038.68890HepG2ZNF622
DBNDD1ENSG00000003249.9566.40300415.005200.448602.519701.97330K562AGGF1
DBNDD1ENSG00000003249.9599.45580456.033300.394402.633801.68200K562AKAP8
DBNDD1ENSG00000003249.9630.19440453.099300.475904.393403.21440K562ATP5C1
DBNDD1ENSG00000003249.9312.01630220.582900.500202.775901.81460K562BCLAF1
DBNDD1ENSG00000003249.9326.31650167.344900.963307.942706.02190K562CSTF2
DBNDD1ENSG00000003249.9214.23000290.24570-0.438102.072401.35830K562EIF4A3
DBNDD1ENSG00000003249.9497.04480361.719400.458403.176501.81180K562EXOSC5
DBNDD1ENSG00000003249.9173.99500301.84130-0.794705.934505.09730K562FXR1
DBNDD1ENSG00000003249.938.79900102.20790-1.397405.050604.03000K562G3BP2
DBNDD1ENSG00000003249.9623.69280407.333200.614505.036104.01740K562GRSF1
DBNDD1ENSG00000003249.9233.64870356.22740-0.608503.166202.53290K562HNRNPC
DBNDD1ENSG00000003249.990.07760160.06290-0.829403.285401.92740K562HNRNPK
DBNDD1ENSG00000003249.9250.47950160.265000.644102.745801.72460K562IGF2BP2
DBNDD1ENSG00000003249.9271.29060163.010200.734804.705703.06580K562IGF2BP3
DBNDD1ENSG00000003249.9678.86600513.387900.403002.851001.92410K562MBNL1
DBNDD1ENSG00000003249.9304.31790186.568800.705802.741501.45740K562NONO
DBNDD1ENSG00000003249.995.32190183.96120-0.948501.980501.33940K562PRPF8
DBNDD1ENSG00000003249.9449.35960319.432000.492302.685301.79730K562PSIP1
DBNDD1ENSG00000003249.9468.23150662.62490-0.501002.711701.90340K562PUF60
DBNDD1ENSG00000003249.9521.74930417.273400.322301.985901.46840K562RBM15
DBNDD1ENSG00000003249.9314.66410187.295400.748402.935302.09310K562RPS19
DBNDD1ENSG00000003249.9327.41000218.399800.584002.671301.68750K562RPS3
DBNDD1ENSG00000003249.9384.02410276.427700.474202.487401.52650K562SRFBP1
DBNDD1ENSG00000003249.9334.44580210.869900.665303.878002.60230K562SRSF4
DBNDD1ENSG00000003249.9234.50790151.507400.630103.187802.04540K562SRSF5
DBNDD1ENSG00000003249.9255.92370353.98920-0.468002.631401.83310K562SYNCRIP
DBNDD1ENSG00000003249.9257.34210162.357200.664403.504102.70410K562TARDBP
DBNDD1ENSG00000003249.9253.50850156.612000.694703.934202.93510K562TIA1
DBNDD1ENSG00000003249.9472.80180307.218600.621903.398902.35660K562TIAL1
DBNDD1ENSG00000003249.9246.33490153.684300.680603.417902.17710K562TRA2A
DBNDD1ENSG00000003249.9501.90470326.578300.619904.304203.06570K562TRIM56
DBNDD1ENSG00000003249.951.2937099.12240-0.950402.853801.74250K562U2AF1
DBNDD1ENSG00000003249.954.55130102.35560-0.907903.053402.20910K562U2AF2
DBNDD1ENSG00000003249.9346.47860191.993300.851604.582802.88420K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for DBNDD1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of DBNDD1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for DBNDD1 is not avaliable on ENCORE database.