NR1H4

General Information

Gene Name : NR1H4
Gene ID : ENSG00000012504.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: NR1H4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	NR1H4	ENSG00000012504.14	0.00	0.00	0.00	ENCSR000AEF
HepG2	NR1H4	ENSG00000012504.14	15.35	32.73	24.04	ENCSR985KAT
K562	NR1H4	ENSG00000012504.14	0.00	0.03	0.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for NR1H4 is not avaliable on ENCORE database.

Proteins bound to RNA

NR1H4 RNA is bound by 26 proteins.

CanvasJS.com

eCLIP assay for NR1H4 is not avaliable on ENCORE database.

26 proteins are bound to NR1H4 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	100886329	100886416	+	3'-UTR,5'-UTR,intron-Proximal	3.30233	16.04706	HepG2	PPIG
chr12	100869417	100869500	+	intron-Distal	4.61094	16.03863	HepG2	QKI
chr12	100904892	100904957	+	CDS,intron-Proximal	3.69920	14.39387	HepG2	PRPF8
chr12	100887049	100887103	+	3'-UTR,5'-UTR,CDS	4.19061	12.93761	HepG2	BCLAF1
chr12	100940822	100940913	+	intron-Distal	4.65614	12.38260	HepG2	PTBP1
chr12	100926297	100926378	+	CDS,intron-Distal,intron-Proximal	4.34609	11.55759	HepG2	BCLAF1
chr12	100934454	100934561	+	3'-UTR,CDS	4.39536	11.11870	HepG2	BCLAF1
chr12	100934484	100934594	+	3'-UTR,CDS	5.61317	10.39778	HepG2	GRWD1
chr12	100943698	100943728	+	intron-Distal	4.60412	9.78867	HepG2	QKI
chr12	100886351	100886416	+	3'-UTR,5'-UTR,intron-Proximal	3.05608	9.43113	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 54 entries

eCLIP assay for NR1H4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for NR1H4 is not available on ENCORE database.
135 RBPs can affect the levels of NR1H4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for NR1H4 is not available on ENCORE database.

135 RBPs can affect the gene expression of NR1H4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
NR1H4	ENSG00000012504.9	331.86250	1716.93990	-2.37120	104.47910	101.60500	HepG2	QKI
NR1H4	ENSG00000012504.9	2858.44980	1028.57260	1.47450	84.49750	82.68090	HepG2	SSB
NR1H4	ENSG00000012504.9	2037.90240	674.40300	1.59530	73.58660	71.37990	HepG2	DKC1
NR1H4	ENSG00000012504.9	327.98530	1184.68320	-1.85280	70.24810	68.59660	HepG2	SRFBP1
NR1H4	ENSG00000012504.9	567.55000	1585.27310	-1.48190	56.51850	54.75180	HepG2	PTBP1
NR1H4	ENSG00000012504.9	314.78790	1048.89700	-1.73640	50.43080	48.75660	HepG2	RBM22
NR1H4	ENSG00000012504.9	2700.30500	875.44100	1.62490	50.35440	48.33290	HepG2	RPLP0
NR1H4	ENSG00000012504.9	330.90300	939.54010	-1.50550	39.41600	37.56630	HepG2	CELF1
NR1H4	ENSG00000012504.9	209.98930	681.79370	-1.69900	39.95830	37.51190	HepG2	PARN
NR1H4	ENSG00000012504.9	344.90250	1001.80750	-1.53830	39.57710	37.06900	HepG2	NOL12
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 135 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for NR1H4 is not available on ENCORE database.

9 RBPs can affect the splicing of NR1H4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	NR1H4	ENSG00000012504.9	chr12	+	100904555	100904921	100926235	100926388	100887047	100887180	100928667	100928801	-0.41800	0.00002	0.00418	2included	HepG2	DROSHA
MXE	NR1H4	ENSG00000012504.9	chr12	+	100904555	100904921	100926235	100926388	100887047	100887180	100928667	100928801	0.34900	0.00008	0.00097	1included	HepG2	U2AF2
SE	NR1H4	ENSG00000012504.9	chr12	+	100926235	100926388			100904555	100904921	100928667	100928801	-0.18000	0.00032	0.01561	excluded	HepG2	HNRNPC
SE	NR1H4	ENSG00000012504.9	chr12	+	100893630	100893802			100887021	100887180	100899352	100899574	0.44200	0.00041	0.01224	included	HepG2	SRSF1
MXE	NR1H4	ENSG00000012504.9	chr12	+	100904704	100904921	100926235	100926388	100887047	100887180	100928667	100928801	0.18300	0.00071	0.07628	1included	HepG2	XRCC6
MXE	NR1H4	ENSG00000012504.9	chr12	+	100904555	100904921	100926235	100926376	100887047	100887180	100928667	100928801	0.34800	0.00074	0.00634	1included	HepG2	U2AF2
MXE	NR1H4	ENSG00000012504.9	chr12	+	100904555	100904921	100926235	100926388	100887047	100887180	100928667	100928801	0.28300	0.00081	0.04352	1included	HepG2	SRSF9
MXE	NR1H4	ENSG00000012504.9	chr12	+	100904555	100904921	100926235	100926388	100887047	100887180	100928667	100928801	0.16700	0.00126	0.02193	1included	HepG2	HNRNPUL1
SE	NR1H4	ENSG00000012504.9	chr12	+	100893630	100893802			100887078	100887180	100899352	100899574	0.46200	0.00228	0.08917	included	HepG2	PCBP1
MXE	NR1H4	ENSG00000012504.9	chr12	+	100904555	100904921	100926235	100926388	100887047	100887180	100928667	100928801	0.15100	0.00839	0.07058	1included	HepG2	SFPQ

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

NR1H4

General Information

Functions

Localization

Domains (AlphaFold: NR1H4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for NR1H4 is not avaliable on ENCORE database.

26 proteins are bound to NR1H4 RNA:

eCLIP assay for NR1H4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for NR1H4 is not available on ENCORE database.

135 RBPs can affect the gene expression of NR1H4 :

The Knockdown/knockout RNA-Seq assay for NR1H4 is not available on ENCORE database.

9 RBPs can affect the splicing of NR1H4 :

The Knockdown/knockout RNA-Seq assay for NR1H4 is not avaliable on ENCORE database.