FAM65A

General Information

Gene Name       : FAM65A
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM65A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM65A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM65A RNA is bound by 16 proteins.  







eCLIP assay for FAM65A is not avaliable on ENCORE database.





16 proteins are bound to FAM65A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr166758049467580613+3'-UTR5.369026.14498K562PCBP1
chr166758050067580574+3'-UTR3.108614.13993K562IGF2BP2
chr166757440367574467+3'-UTR,CDS,intron-Proximal3.964655.05356HepG2PRPF8
chr166757429767574377+3'-UTR,CDS,intron-Proximal4.287888.80047HepG2EFTUD2
chr166757231267572407+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.423985.44438HepG2DDX3X
chr166757442367574483+3'-UTR,CDS,intron-Proximal5.271094.24111K562EFTUD2
chr166757533767575377+3'-UTR,CDS3.430963.93645HepG2PPIG
chr166757130067571399+5'-UTR,intron-Distal5.5137012.12716HepG2CSTF2T
chr166756319267563307+5'-UTR,intron-Distal4.027443.39593HepG2PRPF4
chr166756320167563261+5'-UTR,intron-Distal4.958568.08715HepG2CSTF2T
chr166756319867563270+5'-UTR,intron-Distal3.727443.25786HepG2FAM120A
chr166757132867571396+5'-UTR,intron-Distal3.605483.25786HepG2FAM120A
chr166757143967571485+5'-UTR,CDS,intron-Distal3.163673.48399HepG2CSTF2T
chr166757615567576220+CDS3.551683.82829K562IGF2BP2
chr166757654367576656+CDS4.5357012.48637HepG2DDX59
chr166757656267576686+CDS4.293007.37609K562HNRNPK
chr166757674367576822+CDS4.692065.04042K562IGF2BP2
chr166757635967576446+CDS3.982816.58508HepG2DDX59
chr166757614967576198+CDS3.073983.29363HepG2HNRNPK
chr166757678267576870+CDS5.1378619.12126HepG2PCBP2
chr166757650067576562+CDS3.246583.63710K562HNRNPK
chr166757653367576642+CDS5.0368813.27672HepG2PCBP2
chr166757664667576717+CDS3.6845110.04564HepG2HNRNPK
chr166757866367578726+CDS3.308413.64266HepG2PPIG
chr166757710967577160+CDS4.466163.49905HepG2PPIG
chr166757616867576283+CDS3.045025.51676HepG2IGF2BP1
chr166757670067576774+CDS6.0844115.19890HepG2PCBP2
chr166757819767578235+CDS,intron-Proximal5.118505.74423HepG2BUD13
chr166757646567576582+CDS4.3387514.02459HepG2HNRNPK
chr166757671967576840+CDS4.5809217.75657HepG2DDX59
chr166757682767576886+CDS3.7768812.51977HepG2HNRNPK
chr166757682267576881+CDS4.407134.77733K562IGF2BP2
chr166757622067576279+CDS3.268363.58705K562IGF2BP2
chr166757927867579331+CDS,intron-Proximal4.024896.36347HepG2PPIG
chr166757925467579317+CDS,intron-Proximal4.986076.04760K562AQR
chr166757669367576892+CDS5.3238710.24269K562HNRNPK
chr166757733967577373+CDS,intron-Proximal3.550705.30777HepG2PPIG
chr166757684067576996+CDS5.3415124.02757HepG2DDX59
chr166757658967576618+CDS5.6060011.14982HepG2HNRNPK
chr166757661867576646+CDS5.5710613.52561HepG2HNRNPK
chr166757820067578241+CDS,intron-Proximal3.393375.21025HepG2PPIG
chr166757674067576793+CDS3.463905.37989HepG2HNRNPK
chr166757688667576929+CDS3.100965.26123HepG2HNRNPK
chr166757177567571831+intron-Distal3.306564.37279HepG2CSTF2T
chr166756510867565162+intron-Distal3.949053.14375HepG2RBFOX2
chr166756287067562929+intron-Distal,intron-Proximal3.382564.37279HepG2CSTF2T
chr166757123267571281+intron-Distal3.247833.69530HepG2CSTF2T
chr166756401867564112+intron-Distal,intron-Proximal4.599528.84898HepG2FAM120A
chr166757052167570591+intron-Distal4.562306.07369HepG2RBFOX2
chr166757167467571728+intron-Distal3.595405.32871HepG2CSTF2T
chr166756402167564122+intron-Distal,intron-Proximal4.5600710.75836HepG2CSTF2T
chr166757461767574658+intron-Proximal3.931313.86479HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM65A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM65A is not available on ENCORE database.

  • 107 RBPs can affect the levels of FAM65A.  








The Knockdown/knockout RNA-Seq assay for FAM65A is not available on ENCORE database.





107 RBPs can affect the gene expression of FAM65A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM65AENSG00000039523.131214.674501723.30970-0.504604.440003.26810HepG2ABCF1
FAM65AENSG00000039523.131438.33300909.086100.6618014.9692013.79270HepG2ACO1
FAM65AENSG00000039523.13894.98610616.722800.537101.811601.37120HepG2AKAP1
FAM65AENSG00000039523.131512.334801040.518300.539404.463203.15040HepG2AKAP8
FAM65AENSG00000039523.131217.24310913.351000.414305.495704.44980HepG2AKAP8L
FAM65AENSG00000039523.13698.04720510.228200.452102.045801.36660HepG2ASCC1
FAM65AENSG00000039523.13812.31250482.899200.750202.880401.92230HepG2BCCIP
FAM65AENSG00000039523.131199.351702601.12410-1.116908.274407.30670HepG2BOP1
FAM65AENSG00000039523.13306.22180484.77070-0.662702.134301.44980HepG2CIRBP
FAM65AENSG00000039523.131798.266301419.341500.341303.344502.12690HepG2CPSF7
FAM65AENSG00000039523.131155.02880736.614300.648805.902905.03150HepG2CELF1
FAM65AENSG00000039523.13390.30330530.70970-0.443302.752202.07510HepG2DDX21
FAM65AENSG00000039523.13290.74160519.74570-0.838108.302906.73850HepG2DDX24
FAM65AENSG00000039523.13845.89350590.649000.518102.629702.01830HepG2DDX3X
FAM65AENSG00000039523.13977.80780474.856301.042005.208504.18860HepG2DDX55
FAM65AENSG00000039523.131198.208001494.15630-0.318502.250101.33720HepG2DDX5
FAM65AENSG00000039523.131104.31390507.673601.1211011.9561010.77980HepG2DDX6
FAM65AENSG00000039523.13593.83910869.74710-0.550507.075606.08820HepG2DKC1
FAM65AENSG00000039523.13953.26450527.860600.852608.704407.51220HepG2DNAJC21
FAM65AENSG00000039523.13681.31040523.290200.380603.779103.03940HepG2DNAJC2
FAM65AENSG00000039523.13784.44510487.747300.685404.557603.80730HepG2EIF2S1
FAM65AENSG00000039523.13368.79620501.44010-0.443302.904101.79880HepG2EIF3G
FAM65AENSG00000039523.13790.18320524.941700.589902.490501.83660HepG2EIF4B
FAM65AENSG00000039523.13941.34630748.498900.330602.305601.55820HepG2EIF4G2
FAM65AENSG00000039523.131975.932301376.646900.521309.828408.80680HepG2ETF1
FAM65AENSG00000039523.132657.896201740.161100.611006.264405.15230HepG2FIP1L1
FAM65AENSG00000039523.13802.26770544.131200.560002.746702.05800HepG2FXR1
FAM65AENSG00000039523.13755.17620504.536900.581803.083502.38280HepG2G3BP1
FAM65AENSG00000039523.13707.39870505.694500.484202.874001.83460HepG2GNB2L1
FAM65AENSG00000039523.131357.944401034.574700.392303.961003.11830HepG2HNRNPF
FAM65AENSG00000039523.131102.29620511.413601.1078014.1344012.67500HepG2HNRNPK
FAM65AENSG00000039523.13851.31430721.357600.238902.173101.56580HepG2HNRNPL
FAM65AENSG00000039523.131727.502202583.61630-0.580702.720202.09490HepG2HNRNPLL
FAM65AENSG00000039523.13877.41320512.770900.774805.335604.42520HepG2IGF2BP2
FAM65AENSG00000039523.13881.30220601.518400.550905.698004.67830HepG2ILF2
FAM65AENSG00000039523.13927.38650547.300200.760704.496003.70900HepG2MATR3
FAM65AENSG00000039523.13893.02110560.135700.672804.590303.78570HepG2NCBP2
FAM65AENSG00000039523.13736.13880560.217100.393902.359701.78960HepG2PCBP1
FAM65AENSG00000039523.13781.09590525.230500.572406.898705.77520HepG2PPIL4
FAM65AENSG00000039523.13798.222701148.20370-0.524507.898806.67870HepG2PRPF4
FAM65AENSG00000039523.13893.16480570.089800.647609.956209.04440HepG2PTBP1
FAM65AENSG00000039523.13915.19010795.825000.201501.917201.40400HepG2PUM1
FAM65AENSG00000039523.131837.32460795.222001.2081028.3063026.31960HepG2PUM2
FAM65AENSG00000039523.13585.13810925.96200-0.6622011.4411010.33460HepG2PUS1
FAM65AENSG00000039523.132046.421401661.628100.300402.807301.94530HepG2RBM15
FAM65AENSG00000039523.131605.823901150.624600.480807.397206.64580HepG2RBM22
FAM65AENSG00000039523.131672.91380722.550401.211104.446502.31090HepG2RBM39
FAM65AENSG00000039523.13346.07150485.23750-0.487602.508801.49960HepG2RCC2
FAM65AENSG00000039523.13864.52590634.415400.446404.898504.21430HepG2NELFE
FAM65AENSG00000039523.13712.61550590.944000.270001.898001.37430HepG2RECQL
FAM65AENSG00000039523.131600.450501114.587200.521905.289304.38520HepG2RPLP0
FAM65AENSG00000039523.13923.75310535.352400.7869010.026708.94470HepG2RPS19
FAM65AENSG00000039523.13591.88610361.972800.709302.544701.78700HepG2RRP9
FAM65AENSG00000039523.13935.19890524.407800.8345017.1940015.78520HepG2SAFB2
FAM65AENSG00000039523.131630.75220795.259601.035903.332701.81160HepG2SF1
FAM65AENSG00000039523.131100.57670593.451000.891007.075506.19920HepG2SF3B4
FAM65AENSG00000039523.131998.42390771.873201.372304.753702.78000HepG2SFPQ
FAM65AENSG00000039523.13867.35520718.872500.270802.711902.01580HepG2SLBP
FAM65AENSG00000039523.13979.71410611.518100.6799013.3263012.07760HepG2SMN1
FAM65AENSG00000039523.131719.38460710.865201.274105.347703.37160HepG2SNRNP200
FAM65AENSG00000039523.13407.18400619.46950-0.605406.054405.42170HepG2SRSF1
FAM65AENSG00000039523.131323.33480740.215400.8381019.4190017.96730HepG2SRSF5
FAM65AENSG00000039523.131073.60730504.001701.0909029.8825028.44170HepG2SRSF9
FAM65AENSG00000039523.13685.883901128.36210-0.7182013.9852013.01060HepG2SSB
FAM65AENSG00000039523.131602.527301128.840900.505404.029702.50610HepG2SSRP1
FAM65AENSG00000039523.131475.25450841.792800.8093012.5016011.34200HepG2SUCLG1
FAM65AENSG00000039523.13930.52670472.609000.977305.659504.74540HepG2SUPV3L1
FAM65AENSG00000039523.13928.28980572.095900.698209.534408.70350HepG2TIAL1
FAM65AENSG00000039523.13730.37900577.331400.339102.775102.21050HepG2TRIM56
FAM65AENSG00000039523.131268.02550732.436700.791707.674206.10730HepG2TUFM
FAM65AENSG00000039523.134740.64160826.717502.5195016.3459013.81230HepG2U2AF2
FAM65AENSG00000039523.131078.68750775.310400.476303.468902.52870HepG2UBE2L3
FAM65AENSG00000039523.13432.93550279.114200.633202.167801.49550HepG2UCHL5
FAM65AENSG00000039523.131513.880301291.430400.229202.466201.80060HepG2UPF1
FAM65AENSG00000039523.13602.890301133.12640-0.9103023.1636021.55960HepG2ZC3H8
FAM65AENSG00000039523.131760.438701420.322000.309604.583203.92450HepG2ZNF622
FAM65AENSG00000039523.131733.68620964.810100.8454010.385909.37690K562AGGF1
FAM65AENSG00000039523.131457.701501003.966900.537902.335401.73390K562AKAP8L
FAM65AENSG00000039523.13626.59060934.96670-0.577405.647303.78470K562APOBEC3C
FAM65AENSG00000039523.13528.13260421.513500.325202.207001.34770K562BCLAF1
FAM65AENSG00000039523.13711.316201518.38140-1.094006.333805.00300K562BOP1
FAM65AENSG00000039523.131229.719101614.53510-0.392803.309802.45010K562CPSF6
FAM65AENSG00000039523.13421.62780319.780700.398802.398701.42410K562CSTF2
FAM65AENSG00000039523.131264.61730989.542700.353804.240602.72260K562DDX21
FAM65AENSG00000039523.13701.55000557.418200.331702.315301.36500K562DDX3X
FAM65AENSG00000039523.13828.774901352.13020-0.706207.327906.33610K562DDX47
FAM65AENSG00000039523.13948.68380564.594600.748608.159005.68780K562DHX30
FAM65AENSG00000039523.131555.823701080.099900.526403.971902.89700K562DKC1
FAM65AENSG00000039523.13578.64390415.676700.477102.617701.73300K562EFTUD2
FAM65AENSG00000039523.13377.46740564.22700-0.579905.388304.43310K562EIF2S2
FAM65AENSG00000039523.13698.75480508.369900.458804.065702.45200K562EWSR1
FAM65AENSG00000039523.131173.87680807.839000.539002.791801.52130K562EXOSC5
FAM65AENSG00000039523.13308.61740605.65470-0.9727013.7004012.45780K562FXR1
FAM65AENSG00000039523.1387.65310207.13120-1.240703.498502.68440K562G3BP2
FAM65AENSG00000039523.13494.23130751.84620-0.605305.569104.49290K562GRSF1
FAM65AENSG00000039523.13489.57210672.20180-0.457402.476201.90780K562HNRNPC
FAM65AENSG00000039523.13238.32590362.73100-0.606003.353001.97610K562HNRNPK
FAM65AENSG00000039523.13939.622301221.98720-0.379103.374302.19230K562HNRNPL
FAM65AENSG00000039523.131232.01680967.534000.348503.628302.60610K562HNRNPU
FAM65AENSG00000039523.13630.05630363.426900.793702.749501.72680K562IGF2BP2
FAM65AENSG00000039523.13527.36780381.748100.466103.344002.41320K562MAGOH
FAM65AENSG00000039523.131708.835601193.452300.517803.972602.85050K562MBNL1
FAM65AENSG00000039523.13893.783901129.42830-0.337602.797401.66190K562MSI2
FAM65AENSG00000039523.13911.878001090.51280-0.258102.498301.72970K562MTPAP
FAM65AENSG00000039523.131127.95900836.535500.431102.535201.69890K562NAA15
FAM65AENSG00000039523.13849.126601159.19540-0.449104.317002.43310K562NOL12
FAM65AENSG00000039523.131543.002301211.742700.348605.676104.66260K562NSUN2
FAM65AENSG00000039523.131262.66140759.894100.732503.452702.31060K562PABPN1
FAM65AENSG00000039523.13574.129301027.55910-0.839802.645001.83390K562PCBP3
FAM65AENSG00000039523.13422.16830788.08350-0.900502.675201.88940K562POLR2G
FAM65AENSG00000039523.13804.121301156.11470-0.523805.225204.10660K562PUF60
FAM65AENSG00000039523.13970.319801230.00050-0.342103.638602.40530K562PUM1
FAM65AENSG00000039523.13987.792101204.85980-0.286602.612701.67950K562PUM2
FAM65AENSG00000039523.131613.47860970.080500.733908.200607.20960K562RBM15
FAM65AENSG00000039523.13409.26190215.153600.927609.430207.80310K562SF3B4
FAM65AENSG00000039523.131362.27410847.299200.685002.814001.49600K562SFPQ
FAM65AENSG00000039523.13730.97830555.393300.396202.721401.46620K562SLBP
FAM65AENSG00000039523.131443.42200798.085800.854804.224702.59780K562SNRNP200
FAM65AENSG00000039523.13941.26020725.681800.375202.832301.76520K562SRSF4
FAM65AENSG00000039523.13482.10980343.481200.489002.314201.36840K562SRSF5
FAM65AENSG00000039523.131208.85440882.973400.453106.286904.51160K562SRSF7
FAM65AENSG00000039523.13488.27320367.974100.408002.296901.64920K562TARDBP
FAM65AENSG00000039523.13526.05990354.965200.567404.483303.40430K562TIA1
FAM65AENSG00000039523.131017.23980579.719700.811108.086906.42220K562TIAL1
FAM65AENSG00000039523.13499.69910348.440600.520003.038601.88630K562TRA2A
FAM65AENSG00000039523.13820.78770616.215900.413502.604301.69230K562TRIM56
FAM65AENSG00000039523.13968.843701284.82980-0.407205.877504.87430K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM65A is not available on ENCORE database.





6 RBPs can affect the splicing of FAM65A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSFAM65AENSG00000039523.13chr16+6757851467578733675785976757873367578201675783340.715000.000050.00234longerHepG2U2AF2
RIFAM65AENSG00000039523.13chr16+6757436067574607675743606757440467574481675746070.074000.000020.00023includedK562PUS1
RIFAM65AENSG00000039523.13chr16+6757436067574607675743606757440467574481675746070.109000.000900.07823includedK562HNRNPK
RIFAM65AENSG00000039523.13chr16+6757436067574607675743606757440467574481675746070.085000.000090.00140includedHepG2U2AF1
RIFAM65AENSG00000039523.13chr16+6757436067574607675743606757440467574481675746070.097000.000210.00345includedHepG2RBM22
RIFAM65AENSG00000039523.13chr16+6757985167580134675798516757993567580043675801340.136000.000000.00004includedHepG2RBM22
RIFAM65AENSG00000039523.13chr16+6757436067574607675743606757440467574481675746070.080000.008420.04623includedK562AQR
RIFAM65AENSG00000039523.13chr16+6757541967575661675754196757548167575555675756610.150000.000000.00001includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM65A is not avaliable on ENCORE database.