FUNDC1

General Information

Gene Name       : FUNDC1
Gene ID             : ENSG00000069509.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FUNDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FUNDC1ENSG00000069509.513.2112.0512.63ENCSR000AEF
HepG2FUNDC1ENSG00000069509.512.8720.9016.88ENCSR985KAT
K562FUNDC1ENSG00000069509.518.5119.4218.97ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FUNDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • FUNDC1 RNA is bound by 1 proteins.  







eCLIP assay for FUNDC1 is not avaliable on ENCORE database.





1 proteins are bound to FUNDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4438312244383231-3'-UTR,intron-Distal5.4441442.68668K562PUM2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FUNDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FUNDC1 is not available on ENCORE database.

  • 23 RBPs can affect the levels of FUNDC1.  








The Knockdown/knockout RNA-Seq assay for FUNDC1 is not available on ENCORE database.





23 RBPs can affect the gene expression of FUNDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FUNDC1ENSG00000069509.5127.68810231.33430-0.857405.995705.16920HepG2ACO1
FUNDC1ENSG00000069509.5510.40920350.169800.543502.817002.28070HepG2AKAP1
FUNDC1ENSG00000069509.5319.71900152.357701.069205.882404.76660HepG2CNOT7
FUNDC1ENSG00000069509.5181.61040277.03750-0.609202.422401.86610HepG2EIF2S1
FUNDC1ENSG00000069509.5168.77130240.69350-0.512101.884001.34860HepG2GPKOW
FUNDC1ENSG00000069509.5127.28730229.69820-0.851704.165603.40840HepG2HNRNPLL
FUNDC1ENSG00000069509.5207.01270276.27340-0.416401.968001.43600HepG2RECQL
FUNDC1ENSG00000069509.5204.11700406.86390-0.995202.696001.36850HepG2SF1
FUNDC1ENSG00000069509.5271.69020349.73880-0.364301.993501.38020HepG2SLBP
FUNDC1ENSG00000069509.5152.25250363.23680-1.254404.271102.56620HepG2SNRNP200
FUNDC1ENSG00000069509.5430.39850289.656800.571204.285603.72870HepG2SRSF1
FUNDC1ENSG00000069509.5145.33680223.88420-0.623402.688401.97280HepG2TARDBP
FUNDC1ENSG00000069509.5387.70320213.041100.863705.756604.86740HepG2U2AF1
FUNDC1ENSG00000069509.5528.70360434.334900.283601.809601.33080K562AGGF1
FUNDC1ENSG00000069509.5457.15410294.465300.634503.989102.85670K562HNRNPM
FUNDC1ENSG00000069509.5620.83630479.615400.372202.621401.82080K562KIF1C
FUNDC1ENSG00000069509.5176.34080269.74190-0.613202.895501.96710K562PSIP1
FUNDC1ENSG00000069509.51106.51270871.979500.343602.944101.84060K562PUM1
FUNDC1ENSG00000069509.5591.42180448.177000.400002.375901.86430K562PUS1
FUNDC1ENSG00000069509.5568.53660436.708500.380502.770002.17640K562RBM15
FUNDC1ENSG00000069509.5153.37480233.28600-0.605002.594301.61170K562SRFBP1
FUNDC1ENSG00000069509.5170.24280259.44870-0.607902.705001.78070K562TIAL1
FUNDC1ENSG00000069509.5187.58560275.61140-0.555102.575901.66960K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FUNDC1 is not available on ENCORE database.





1 RBPs can affect the splicing of FUNDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFUNDC1ENSG00000069509.5chrX-443977124439778844386482443866114440119044401347-0.118000.000530.01120excludedK562HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FUNDC1 is not avaliable on ENCORE database.