GLTSCR1

General Information

Gene Name       : GLTSCR1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GLTSCR1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GLTSCR1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GLTSCR1 RNA is bound by 27 proteins.  







eCLIP assay for GLTSCR1 is not avaliable on ENCORE database.





27 proteins are bound to GLTSCR1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194820644548206535+3'-UTR,intron-Distal,polyA_site6.578098.89419K562PUM2
chr194820631848206402+3'-UTR,intron-Distal3.835834.62831HepG2PCBP2
chr194819769348197876+CDS,intron-Distal4.5090510.20284HepG2DDX59
chr194820476548204872+CDS,intron-Distal4.544897.70131HepG2PCBP2
chr194817916748179267+CDS,intron-Distal,intron-Proximal3.481514.83899HepG2PRPF8
chr194817903948179112+CDS,intron-Distal,intron-Proximal4.804107.30082HepG2SF3B4
chr194819750948197590+CDS,intron-Distal4.835106.39924HepG2HNRNPK
chr194819733948197467+CDS,intron-Distal,intron-Proximal3.389453.70624HepG2HNRNPK
chr194819750648197592+CDS,intron-Distal5.7253511.35730HepG2DDX59
chr194817701848177028+CDS,intron-Distal,intron-Proximal3.331154.41130K562AQR
chr194819766448197870+CDS,intron-Distal3.964098.80515HepG2HNRNPK
chr194812336448123466+intron-Distal4.366934.66266K562TARDBP
chr194817590248175966+intron-Distal5.068358.10881HepG2FAM120A
chr194817984648179921+intron-Distal5.013907.79030HepG2PCBP2
chr194819994548200029+intron-Distal4.983108.04569HepG2RBFOX2
chr194811347248113528+intron-Distal4.402479.70521HepG2NKRF
chr194811326048113337+intron-Distal3.480669.05327HepG2CSTF2T
chr194817407248174187+intron-Distal5.2925810.15275HepG2RBFOX2
chr194817590448176010+intron-Distal5.383558.53392K562GTF2F1
chr194817571648175770+intron-Distal4.503713.99130HepG2FAM120A
chr194814776648147814+intron-Distal4.018183.88460HepG2PCBP2
chr194812197348122045+intron-Distal4.307923.76710K562NONO
chr194814772748147766+intron-Distal5.306389.00303HepG2PCBP2
chr194817590848176017+intron-Distal6.257989.86844K562DHX30
chr194819690448196982+intron-Distal3.375303.61733HepG2XPO5
chr194817927748179351+intron-Distal4.228383.31153K562GTF2F1
chr194815451648154605+intron-Distal4.691766.34754HepG2RBFOX2
chr194816708848167212+intron-Distal3.905523.45317HepG2HNRNPL
chr194817590448175979+intron-Distal3.040313.27222HepG2CSTF2T
chr194817409648174191+intron-Distal3.960167.58727HepG2CSTF2T
chr194819977548199891+intron-Distal,intron-Proximal4.207066.81262HepG2RBFOX2
chr194817460448174659+intron-Distal4.305575.16036HepG2CSTF2T
chr194811466948114749+intron-Distal4.804646.03393HepG2NKRF
chr194813142948131496+intron-Distal4.145964.08332K562NONO
chr194813142148131505+intron-Distal4.739656.12104HepG2QKI
chr194814772748147819+intron-Distal4.214824.27936HepG2PTBP1
chr194817945648179569+intron-Distal4.868866.41765K562GTF2F1
chr194817593648175997+intron-Distal4.636646.83853HepG2PRPF4
chr194811274948112799+intron-Distal3.551675.32871HepG2CSTF2T
chr194818897048189054+intron-Distal4.475928.44255K562EIF4G2
chr194812352848123593+intron-Distal3.728643.08314K562TARDBP
chr194817928748179349+intron-Distal3.330294.28282K562EFTUD2
chr194817923648179344+intron-Distal,intron-Proximal4.180533.44423K562BUD13
chr194812139548121447+intron-Distal4.149323.91671HepG2RBFOX2
chr194815106948151119+intron-Distal3.919603.45219HepG2RBFOX2
chr194811345648113497+intron-Distal3.384344.35339HepG2CSTF2T
chr194817633048176433+intron-Distal4.101443.25631HepG2PRPF4
chr194811875248118816+intron-Distal4.030193.82910K562NONO
chr194811292148112975+intron-Distal4.486854.86859HepG2CSTF2T
chr194811324648113304+intron-Distal3.637214.46513HepG2NKRF
chr194815134048151420+intron-Distal3.124184.82056HepG2PCBP2
chr194811324148113308+intron-Distal3.068763.15535K562EWSR1
chr194815054848150630+intron-Distal4.094414.08332K562NONO
chr194811869048118774+intron-Distal3.886095.12003HepG2HNRNPM
chr194817591448176043+intron-Distal3.498544.76898K562CSTF2T
chr194818902048189082+intron-Distal4.122444.13641K562TARDBP
chr194817619148176247+intron-Distal3.968113.44758HepG2CSTF2T
chr194818872848188863+intron-Distal4.094449.87450K562EIF4G2
chr194811463448114738+intron-Distal3.064213.37046HepG2STAU2
chr194811371848113776+intron-Distal3.929696.56195HepG2NKRF
chr194817408148174190+intron-Distal3.030443.30948HepG2PRPF4
chr194811325848113333+intron-Distal3.061453.62838HepG2FAM120A
chr194811587948115948+intron-Distal3.201273.27222HepG2CSTF2T
chr194816705548167290+intron-Distal3.285803.62826K562HNRNPL
chr194812204548122092+intron-Distal3.829453.31905K562NONO
chr194817592248176038+intron-Distal4.562444.70962HepG2GTF2F1
chr194812905348129161+intron-Distal3.771013.05512HepG2PRPF4
chr194814774348147824+intron-Distal4.564545.86170K562ILF3
chr194812177748121913+intron-Distal3.231844.92335K562NONO
chr194820009648200196+intron-Distal3.307363.02792HepG2RBFOX2
chr194819978948199866+intron-Distal,intron-Proximal3.312373.87400K562RBFOX2
chr194817917348179220+intron-Distal,intron-Proximal4.672064.86944K562AQR
chr194817702848177061+intron-Distal,intron-Proximal3.625854.88100K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GLTSCR1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GLTSCR1 is not available on ENCORE database.

  • 55 RBPs can affect the levels of GLTSCR1.  








The Knockdown/knockout RNA-Seq assay for GLTSCR1 is not available on ENCORE database.





55 RBPs can affect the gene expression of GLTSCR1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GLTSCR1ENSG00000063169.6377.88360256.783800.557302.349801.47990HepG2ABCF1
GLTSCR1ENSG00000063169.6243.18090174.740200.476702.448201.87020HepG2ACO1
GLTSCR1ENSG00000063169.6247.09840175.560300.493002.523801.78740HepG2AKAP8L
GLTSCR1ENSG00000063169.6115.3036069.120100.738202.756402.10630HepG2DNAJC2
GLTSCR1ENSG00000063169.6302.35690194.730000.634703.015301.78740HepG2EIF2S2
GLTSCR1ENSG00000063169.6158.2863090.103800.812802.458601.80860HepG2EIF4B
GLTSCR1ENSG00000063169.6180.9552093.416000.953803.511702.73780HepG2FXR1
GLTSCR1ENSG00000063169.6151.0364086.590500.802502.189401.59470HepG2G3BP1
GLTSCR1ENSG00000063169.6185.38210125.399600.563902.244301.59370HepG2HNRNPF
GLTSCR1ENSG00000063169.6178.4308087.835901.022404.038103.20770HepG2HNRNPK
GLTSCR1ENSG00000063169.6131.3311077.795900.755303.113302.47320HepG2HNRNPU
GLTSCR1ENSG00000063169.6159.4478087.993700.857502.804702.12540HepG2IGF2BP2
GLTSCR1ENSG00000063169.6476.23960263.621500.853104.056603.04760HepG2LARP4
GLTSCR1ENSG00000063169.6191.3659093.449101.034004.336903.51880HepG2MAGOH
GLTSCR1ENSG00000063169.6221.7768096.148001.205705.892504.98550HepG2NCBP2
GLTSCR1ENSG00000063169.6183.5183067.069501.452106.585904.37460HepG2NOLC1
GLTSCR1ENSG00000063169.6193.1396082.913101.219908.662207.68610HepG2PCBP1
GLTSCR1ENSG00000063169.6157.9654084.380300.904503.597902.99180HepG2PTBP1
GLTSCR1ENSG00000063169.6163.4570082.923800.979004.828403.96000HepG2RBM25
GLTSCR1ENSG00000063169.6202.9263093.896301.111706.867506.08280HepG2NELFE
GLTSCR1ENSG00000063169.6154.3591087.471400.819303.644502.95000HepG2RECQL
GLTSCR1ENSG00000063169.6113.5477066.069400.781102.247401.52640HepG2RPS3A
GLTSCR1ENSG00000063169.6108.3820069.281200.645502.024501.46010HepG2SAFB2
GLTSCR1ENSG00000063169.6222.2956084.439001.396402.640101.32650HepG2SF1
GLTSCR1ENSG00000063169.6756.58390320.213701.2404012.6209011.11910HepG2SF3A3
GLTSCR1ENSG00000063169.6192.2228087.827301.129906.944506.07440HepG2SF3B4
GLTSCR1ENSG00000063169.6196.1109075.691201.373403.101801.69400HepG2SNRNP200
GLTSCR1ENSG00000063169.6201.56910296.71340-0.557802.083601.40910HepG2SNRNP70
GLTSCR1ENSG00000063169.698.8616057.490300.782002.324901.33150HepG2STIP1
GLTSCR1ENSG00000063169.6122.2106075.596600.692902.346701.87870HepG2TIAL1
GLTSCR1ENSG00000063169.6121.6991076.268800.674102.403701.87060HepG2TRIM56
GLTSCR1ENSG00000063169.6361.49000221.747500.704903.551602.84470HepG2U2AF1
GLTSCR1ENSG00000063169.6446.7548087.743602.3480010.607508.57550HepG2U2AF2
GLTSCR1ENSG00000063169.6387.06130213.750600.856506.198705.38020K562AQR
GLTSCR1ENSG00000063169.6385.03150149.804701.361805.147603.60970K562CCAR1
GLTSCR1ENSG00000063169.6449.45820312.226000.525503.434501.80130K562DDX19B
GLTSCR1ENSG00000063169.6447.53940321.126800.478803.598402.86730K562DDX47
GLTSCR1ENSG00000063169.6290.69280167.732600.793203.427601.92810K562DHX30
GLTSCR1ENSG00000063169.6184.0803088.805001.051505.324604.03450K562EFTUD2
GLTSCR1ENSG00000063169.6225.80560156.464000.529202.459101.77370K562EIF2S2
GLTSCR1ENSG00000063169.6299.69390152.366700.975802.311601.40130K562EIF3A
GLTSCR1ENSG00000063169.6237.73050111.524801.091906.780305.88490K562HNRNPC
GLTSCR1ENSG00000063169.6286.68530178.494400.683504.543803.39250K562HNRNPU
GLTSCR1ENSG00000063169.6171.74830272.77280-0.667403.398302.51720K562HSPD1
GLTSCR1ENSG00000063169.6143.9760071.932001.001004.755303.64700K562MAGOH
GLTSCR1ENSG00000063169.6144.1522086.417700.738102.364001.66850K562PRPF8
GLTSCR1ENSG00000063169.6155.13590100.006300.633302.142101.35630K562PSIP1
GLTSCR1ENSG00000063169.6107.2771069.894100.618001.900501.33110K562PTBP1
GLTSCR1ENSG00000063169.6342.71920159.857001.100104.944702.31190K562RBFOX2
GLTSCR1ENSG00000063169.6121.7828065.320100.898603.268101.72090K562RBM34
GLTSCR1ENSG00000063169.6153.1069091.303500.745702.835301.83140K562RCC2
GLTSCR1ENSG00000063169.6151.0701086.609400.802502.419301.49020K562RPS3
GLTSCR1ENSG00000063169.6161.5628086.547000.900403.770502.51920K562SRFBP1
GLTSCR1ENSG00000063169.6125.9628068.531100.878103.234702.47470K562SRSF1
GLTSCR1ENSG00000063169.6172.9458083.596101.048704.681903.24900K562SRSF4
GLTSCR1ENSG00000063169.6124.5179064.750900.943303.670602.42870K562SRSF5
GLTSCR1ENSG00000063169.6188.9527069.333101.446309.638808.19330K562TARDBP
GLTSCR1ENSG00000063169.6149.6888066.886101.162105.900504.63670K562TIA1
GLTSCR1ENSG00000063169.6129.5642065.693900.979703.742002.44380K562TRA2A
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GLTSCR1 is not available on ENCORE database.





3 RBPs can affect the splicing of GLTSCR1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGLTSCR1ENSG00000063169.6chr19+481852324818540948182577481845334819737148197983-0.267000.000940.05741excludedHepG2FTO
SEGLTSCR1ENSG00000063169.6chr19+4818523248185409481825774818453348197371481979830.358000.000930.08307includedHepG2LARP4
SEGLTSCR1ENSG00000063169.6chr19+4818523248185409481825774818453348197371481979830.312000.000530.07751includedHepG2RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GLTSCR1 is not avaliable on ENCORE database.