ARAF

General Information

Gene Name       : ARAF
Gene ID             : ENSG00000078061.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARAF)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARAFENSG00000078061.1216.6223.9820.30ENCSR000AEF
HepG2ARAFENSG00000078061.1224.2214.1419.18ENCSR985KAT
K562ARAFENSG00000078061.1243.3932.3637.88ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARAF is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARAF RNA is bound by 17 proteins.  







eCLIP assay for ARAF is not avaliable on ENCORE database.





17 proteins are bound to ARAF RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4742665447426706+3'-UTR,CDS3.432603.73423K562UCHL5
chrX4743075247430875+3'-UTR,CDS,intron-Proximal4.336734.78834HepG2PABPN1
chrX4743090247430996+3'-UTR,intron-Proximal3.182714.28097K562DDX55
chrX4742649947426531+3'-UTR,CDS,intron-Proximal4.430964.08604HepG2PPIG
chrX4742807447428139+3'-UTR,CDS,intron-Proximal4.0049715.34537K562SF3B4
chrX4742662647426657+3'-UTR,CDS,intron-Proximal4.430964.08604HepG2PPIG
chrX4742807647428122+3'-UTR,CDS,intron-Proximal4.531944.32536HepG2SF3B4
chrX4742807547428145+3'-UTR,CDS,intron-Proximal4.459907.79386K562SMNDC1
chrX4742823047428293+3'-UTR,CDS3.322599.27085K562YBX3
chrX4742064847420662+5'-UTR,intron-Proximal5.676739.95272K562AQR
chrX4742063847420719+5'-UTR,intron-Proximal4.476198.44604HepG2PRPF8
chrX4742226447422354+5'-UTR,intron-Proximal3.290755.96743K562BUD13
chrX4742439747424423+CDS3.140615.26596K562YBX3
chrX4742442347424476+CDS3.514009.17533K562YBX3
chrX4743059347430735+CDS,intron-Distal,intron-Proximal5.152746.10540K562EIF4G2
chrX4742243547422462+CDS3.382604.70209K562YBX3
chrX4743028247430322+CDS3.784403.01531K562YBX3
chrX4742422547424295+CDS3.870916.42536K562LIN28B
chrX4743040747430457+CDS,intron-Proximal3.807385.34337K562AQR
chrX4742896747429042+CDS3.450733.73413HepG2PPIG
chrX4742264547422723+CDS4.6718313.19760K562LIN28B
chrX4742414447424208+CDS,intron-Proximal3.698486.26407K562SF3B4
chrX4742604947426143+CDS,intron-Distal5.187636.97910HepG2PCBP2
chrX4742073647420799+intron-Distal,intron-Proximal5.238115.16714HepG2EFTUD2
chrX4742079947420921+intron-Distal4.124417.53528HepG2EFTUD2
chrX4742595447426020+intron-Distal,intron-Proximal4.408244.77477HepG2RBFOX2
chrX4742091447420976+intron-Distal5.158315.02942K562EFTUD2
chrX4742119447421355+intron-Distal3.427863.63710K562HNRNPK
chrX4742080747420886+intron-Distal4.041086.82477K562EFTUD2
chrX4742067247420765+intron-Distal,intron-Proximal4.635776.49507K562EFTUD2
chrX4742065247420690+intron-Proximal4.515953.02181K562PRPF8
chrX4742067547420720+intron-Proximal4.109973.82719HepG2RBM22
chrX4742066247420714+intron-Proximal5.9293511.02807K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARAF is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARAF is not available on ENCORE database.

  • 78 RBPs can affect the levels of ARAF.  








The Knockdown/knockout RNA-Seq assay for ARAF is not available on ENCORE database.





78 RBPs can affect the gene expression of ARAF :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARAFENSG00000078061.8736.52380607.630700.277402.115001.43180HepG2AKAP8L
ARAFENSG00000078061.8310.14660497.21590-0.680905.716204.66130HepG2CALR
ARAFENSG00000078061.8665.67560547.406900.282102.207401.62340HepG2CELF1
ARAFENSG00000078061.8476.25620321.958100.564804.550603.08670HepG2DDX1
ARAFENSG00000078061.8876.14180610.912000.520102.469601.88380HepG2DDX6
ARAFENSG00000078061.8459.44070315.694300.541302.469001.80030HepG2DNAJC21
ARAFENSG00000078061.8541.23520312.925100.7903011.208509.99350HepG2DNAJC2
ARAFENSG00000078061.8481.86780939.73540-0.9636019.4064018.05350HepG2ETF1
ARAFENSG00000078061.8155.46040323.14550-1.055604.696203.07800HepG2FKBP4
ARAFENSG00000078061.8530.04810354.522100.580101.931601.34040HepG2HNRNPC
ARAFENSG00000078061.8797.40280597.000900.417504.085903.23210HepG2HNRNPF
ARAFENSG00000078061.8814.71950589.988200.465503.237302.56300HepG2HNRNPLL
ARAFENSG00000078061.8602.96010352.177700.7757010.683709.55710HepG2HNRNPU
ARAFENSG00000078061.8757.65750587.871900.365902.654301.94410HepG2IGF2BP1
ARAFENSG00000078061.8475.08910359.736800.401203.517202.69930HepG2ILF2
ARAFENSG00000078061.8975.73230716.597800.445202.387701.62040HepG2LARP4
ARAFENSG00000078061.8515.60350314.113300.714903.681702.84370HepG2PPIL4
ARAFENSG00000078061.8771.58790557.079400.469804.118303.40750HepG2PUF60
ARAFENSG00000078061.8783.44330591.399500.405605.232904.47030HepG2PUM1
ARAFENSG00000078061.8739.07850616.089200.262502.086901.53380HepG2PUS1
ARAFENSG00000078061.8390.75970686.73060-0.813508.018107.03890HepG2QKI
ARAFENSG00000078061.8421.92350705.73740-0.742208.544107.68970HepG2NELFE
ARAFENSG00000078061.8972.27060643.169400.596103.838103.05420HepG2RPLP0
ARAFENSG00000078061.8472.09540313.626200.589905.701004.82880HepG2SAFB2
ARAFENSG00000078061.8526.10360259.089601.021802.913801.51560HepG2SF1
ARAFENSG00000078061.8926.80010662.756300.483702.826002.14410HepG2SF3A3
ARAFENSG00000078061.8401.67500583.96170-0.539803.769102.95730HepG2SF3B1
ARAFENSG00000078061.8686.65960534.224400.362003.726302.93250HepG2SLBP
ARAFENSG00000078061.8477.30710365.735100.384002.998602.33240HepG2SMN1
ARAFENSG00000078061.8632.23830395.007800.678503.988802.82110HepG2SMNDC1
ARAFENSG00000078061.8554.43710231.744001.258404.538702.77100HepG2SNRNP200
ARAFENSG00000078061.8626.68880887.13770-0.501406.560005.87860HepG2SRFBP1
ARAFENSG00000078061.8518.50290689.11420-0.410402.840402.36270HepG2SRSF1
ARAFENSG00000078061.8737.51910586.545900.330302.670101.98660HepG2SRSF7
ARAFENSG00000078061.8413.41630560.65920-0.439503.746303.12590HepG2SRSF9
ARAFENSG00000078061.8795.88930625.552900.347303.744603.04020HepG2SUCLG1
ARAFENSG00000078061.8457.60080619.49340-0.437002.419901.88990HepG2TAF15
ARAFENSG00000078061.8578.35730342.183500.757108.174207.39850HepG2TIAL1
ARAFENSG00000078061.8656.74290345.267000.9275015.3376014.15930HepG2TRIM56
ARAFENSG00000078061.8656.40190269.313401.285204.205002.97590HepG2U2AF2
ARAFENSG00000078061.8779.64590587.763600.407504.315703.47560HepG2UPF1
ARAFENSG00000078061.8799.57640567.462600.494605.907005.08690HepG2UTP3
ARAFENSG00000078061.8542.24470380.444300.511202.066601.43150HepG2XRN2
ARAFENSG00000078061.81038.55190646.427400.6839014.1508013.15480HepG2ZNF622
ARAFENSG00000078061.82064.200201544.843500.418007.369006.50810K562AGGF1
ARAFENSG00000078061.81990.439001607.487000.308202.031701.46920K562AKAP8L
ARAFENSG00000078061.8929.462601526.06870-0.715408.755807.80760K562AQR
ARAFENSG00000078061.81997.668201686.654600.244102.487501.62520K562ATP5C1
ARAFENSG00000078061.81170.24130796.188500.555503.632102.13880K562EEF2
ARAFENSG00000078061.81672.709901311.663100.350704.237203.37570K562EIF2S2
ARAFENSG00000078061.8644.02580444.103400.536104.930703.88350K562EIF3G
ARAFENSG00000078061.81088.60260829.817100.391504.304602.80770K562EIF4B
ARAFENSG00000078061.81121.99780804.322700.480105.720403.73790K562EWSR1
ARAFENSG00000078061.81438.961701041.794600.465904.548503.44100K562FIP1L1
ARAFENSG00000078061.8636.71920883.11130-0.471903.160301.93860K562FKBP4
ARAFENSG00000078061.8145.29230413.36460-1.508507.722906.41630K562G3BP2
ARAFENSG00000078061.81752.350501412.405700.311002.449901.69740K562HSPD1
ARAFENSG00000078061.81140.35630625.757800.865703.744602.48190K562IGF2BP2
ARAFENSG00000078061.8489.86150725.38930-0.566403.433202.38060K562KRR1
ARAFENSG00000078061.81201.39600906.748400.405803.578001.77820K562LSM11
ARAFENSG00000078061.8905.67220655.585500.466102.602301.70910K562MATR3
ARAFENSG00000078061.82345.532501911.064700.295402.810601.89330K562MBNL1
ARAFENSG00000078061.81618.811202064.54810-0.350903.091101.89310K562MSI2
ARAFENSG00000078061.81027.55560758.256300.438402.983701.62570K562NONO
ARAFENSG00000078061.81591.307201030.834400.626302.624401.66650K562PABPN1
ARAFENSG00000078061.8843.366201684.28680-0.997905.500004.32190K562PCBP3
ARAFENSG00000078061.8690.400001291.82340-0.903906.853105.60120K562POLR2G
ARAFENSG00000078061.81182.18200911.330700.375302.910301.97870K562PSIP1
ARAFENSG00000078061.8930.50930638.378000.543503.498502.76250K562PTBP1
ARAFENSG00000078061.81853.042202247.86280-0.278702.621601.58540K562PUM1
ARAFENSG00000078061.82198.375401594.133900.463603.230502.65160K562PUS1
ARAFENSG00000078061.82013.915501553.286500.374602.552901.98040K562RBM15
ARAFENSG00000078061.8937.41830596.636000.651703.099501.60070K562RBM34
ARAFENSG00000078061.81207.78940831.748500.538006.348904.85120K562RCC2
ARAFENSG00000078061.8410.86630643.88440-0.648102.430501.41790K562NELFE
ARAFENSG00000078061.8566.76300807.94490-0.511503.382402.30520K562SF3B1
ARAFENSG00000078061.81997.640201148.998600.797803.693102.09660K562SFPQ
ARAFENSG00000078061.81100.39150788.446600.480804.279002.92340K562SRFBP1
ARAFENSG00000078061.81002.00840625.894300.678805.451604.46510K562SRSF1
ARAFENSG00000078061.8903.55900683.425100.402703.111101.97830K562SRSF4
ARAFENSG00000078061.8918.54450591.285700.635403.824902.55330K562SRSF5
ARAFENSG00000078061.81051.249301366.85160-0.378802.939301.53350K562SSRP1
ARAFENSG00000078061.8225.64020405.72810-0.846503.346701.68050K562TAF15
ARAFENSG00000078061.8948.76720633.292900.583102.844802.12790K562TARDBP
ARAFENSG00000078061.81096.94790610.922700.844305.832904.57610K562TIA1
ARAFENSG00000078061.81004.98560599.859000.744405.749404.04100K562TRA2A
ARAFENSG00000078061.81281.71830931.492300.460404.365503.11610K562TRIM56
ARAFENSG00000078061.81377.648901719.10910-0.319502.636301.79740K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARAF is not available on ENCORE database.





5 RBPs can affect the splicing of ARAF :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEARAFENSG00000078061.8chrX+4742208047422161474206204742065047422307474224620.393000.000000.00000includedHepG2U2AF1
SEARAFENSG00000078061.8chrX+4742208047422161474206204742065047422307474224620.113000.001120.06961includedK562HNRNPL
SEARAFENSG00000078061.8chrX+474220804742216147420620474206504742230747422462-0.090000.000280.05222excludedK562UPF1
SEARAFENSG00000078061.8chrX+4742208047422161474205154742065047422307474224620.817000.000140.00384includedK562U2AF2
A3SSARAFENSG00000078061.8chrX+4742259747422728474226244742272847422263474224620.092000.000000.00001longerK562AQR
A3SSARAFENSG00000078061.8chrX+4743023147430411474302764743041147429291474294230.084000.000030.00033longerK562AQR
A3SSARAFENSG00000078061.8chrX+4742226347422462474223074742246247420620474206500.053000.001570.01039longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARAF is not avaliable on ENCORE database.