AFF4

General Information

Gene Name       : AFF4
Gene ID             : ENSG00000072364.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AFF4)


Antibody Validation

 View validation images for all AFF4 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AFF4ENSG00000072364.1210.9711.5511.26ENCSR000AEF
HepG2AFF4ENSG00000072364.129.7215.4012.56ENCSR985KAT
K562AFF4ENSG00000072364.1212.2913.1612.72ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
AFF4ENCAB106ONTA302-538A2Released, ENCODE4
AFF4ENCAB734KFKA302-539A1Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
AFF4K562CRISPRBGKcLV26-13,BGKcLV26-14BGKcLV26-1,BGKcLV26-225.7,11.3NotSatisfiedENCODE4
AFF4HepG2CRISPRBGHcLV25-17,BGHcLV25-18BGHcLV25-1,BGHcLV25-2no clear band on the position,NotSatisfiedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
AFF4Product_ID: A302-538A
Lot_ID: 2
Source: Bethyl Labs
Target Name: AFF4-human		 Bethyl_A302-538A_2_AFF4.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the AFF4 specific antibody, A302-538A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the AFF4-specific antibody, A302-538A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
AFF4Product_ID: A302-539A
Lot_ID: 1
Source: Bethyl Labs
Target Name: AFF4-human		 Bethyl_A302-539A_1_AFF4.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the AFF4 specific antibody, A302-539A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the AFF4-specific antibody, A302-539A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








RNA Targets

  • eCLIP assay for AFF4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AFF4 RNA is bound by 39 proteins.  







eCLIP assay for AFF4 is not avaliable on ENCORE database.





39 proteins are bound to AFF4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5132211620132211671-3'-UTR,intron-Distal4.025246.42906HepG2FAM120A
chr5132216366132216429-3'-UTR,intron-Distal3.718984.25440K562TIA1
chr5132211114132211184-3'-UTR,intron-Distal4.7548818.52095K562PUM2
chr5132216368132216432-3'-UTR,intron-Distal3.925263.07706HepG2TIAL1
chr5132227766132227822-3'-UTR,CDS,intron-Distal,intron-Proximal6.5723814.81397K562AQR
chr5132227791132227922-3'-UTR,CDS,intron-Distal,intron-Proximal3.035127.56548K562BUD13
chr5132213079132213167-3'-UTR,intron-Distal3.469533.68079HepG2FUBP3
chr5132211623132211673-3'-UTR,intron-Distal3.393327.25900K562FAM120A
chr5132211851132211913-3'-UTR,intron-Distal4.3740623.18737K562FAM120A
chr5132211575132211613-3'-UTR,intron-Distal3.377113.77257K562FAM120A
chr5132216371132216434-3'-UTR,intron-Distal4.001203.04397HepG2TIA1
chr5132211257132211320-3'-UTR,intron-Distal3.516084.86553HepG2FUBP3
chr5132213168132213235-3'-UTR,intron-Distal3.710865.51877K562PUM2
chr5132211792132211886-3'-UTR,intron-Distal3.168735.15194K562UPF1
chr5132211849132211905-3'-UTR,intron-Distal5.5750513.56573HepG2FAM120A
chr5132216285132216343-3'-UTR,intron-Distal3.022824.13687HepG2FUBP3
chr5132215682132215763-3'-UTR,intron-Distal4.1590810.12270K562FAM120A
chr5132211592132211681-3'-UTR,intron-Distal3.193683.53952HepG2KHSRP
chr5132299005132299071-5'-UTR,intron-Distal3.736934.51666K562RBM15
chr5132299189132299247-5'-UTR,intron-Distal,intron-Proximal4.361226.15796HepG2DDX3X
chr5132299220132299299-5'-UTR,intron-Distal,intron-Proximal4.770923.69821K562DDX3X
chr5132298984132299104-5'-UTR,intron-Distal3.266836.72797HepG2DDX3X
chr5132299246132299323-5'-UTR,intron-Distal,intron-Proximal4.694656.14390HepG2NCBP2
chr5132272824132272914-5'-UTR,CDS,intron-Distal,intron-Proximal3.446355.30514HepG2BUD13
chr5132299071132299119-5'-UTR,intron-Distal3.760084.80676K562RBM15
chr5132272837132272921-5'-UTR,CDS,intron-Distal,intron-Proximal4.006434.22551K562SF3B4
chr5132298903132298972-5'-UTR,intron-Distal4.517358.11807HepG2PRPF8
chr5132299162132299234-5'-UTR,intron-Distal,intron-Proximal3.489954.06531HepG2GRWD1
chr5132224809132224956-CDS,intron-Distal,intron-Proximal3.040374.43994HepG2U2AF2
chr5132269934132270068-CDS,intron-Distal,intron-Proximal4.4963011.16007K562IGF2BP1
chr5132216757132216811-CDS,intron-Distal3.617483.27788HepG2IGF2BP3
chr5132223654132223729-CDS,intron-Distal,intron-Proximal4.089945.16342K562SF3B4
chr5132267882132267939-CDS,intron-Distal,intron-Proximal3.679315.35619K562AQR
chr5132227994132228097-CDS,intron-Distal,intron-Proximal4.8849219.71265K562ZNF622
chr5132220753132220864-CDS,intron-Distal,intron-Proximal3.608205.47851K562SF3B4
chr5132235277132235331-CDS,intron-Distal,intron-Proximal3.8801712.44610K562ZNF622
chr5132219056132219073-CDS,intron-Distal3.594593.90826K562ZNF622
chr5132224815132224878-CDS,intron-Distal,intron-Proximal3.353013.09957HepG2AQR
chr5132235290132235346-CDS,intron-Distal,intron-Proximal3.455404.47780K562GPKOW
chr5132232568132232622-CDS,intron-Distal3.638086.36847HepG2BCLAF1
chr5132270118132270191-CDS,intron-Distal3.111823.21309HepG2GRWD1
chr5132223794132223853-CDS,intron-Distal,intron-Proximal3.528924.40383K562UCHL5
chr5132269920132270001-CDS,intron-Distal,intron-Proximal3.382954.92519HepG2IGF2BP1
chr5132232714132232758-CDS,intron-Distal4.824316.46917K562ZNF622
chr5132270484132270581-CDS,intron-Distal3.863098.66838HepG2BCLAF1
chr5132267871132267916-CDS,intron-Distal,intron-Proximal3.021914.59907HepG2PPIG
chr5132222052132222098-CDS,intron-Distal,intron-Proximal4.067314.34615K562LIN28B
chr5132227996132228095-CDS,intron-Distal3.058708.02563HepG2GRWD1
chr5132270104132270180-CDS,intron-Distal3.631974.05694K562IGF2BP1
chr5132227978132228062-CDS,intron-Distal4.3685712.20960K562RBM15
chr5132269938132269998-CDS,intron-Distal,intron-Proximal3.328155.64486K562IGF2BP2
chr5132221958132222097-CDS,intron-Distal,intron-Proximal3.578507.85990HepG2PRPF8
chr5132222050132222123-CDS,intron-Distal,intron-Proximal4.066315.97994K562AQR
chr5132228725132228808-CDS,intron-Distal3.404924.04629HepG2G3BP1
chr5132232514132232561-CDS,intron-Distal4.012876.22576HepG2BCLAF1
chr5132224769132224827-CDS,intron-Distal,intron-Proximal4.415514.69889HepG2GRWD1
chr5132232171132232268-CDS,intron-Distal3.7404810.10467HepG2BCLAF1
chr5132227871132227974-CDS,intron-Distal4.653304.13543HepG2FXR2
chr5132272770132272879-CDS,intron-Distal3.020273.90804HepG2GRWD1
chr5132270493132270543-CDS,intron-Distal3.973896.37184K562RBM15
chr5132270370132270474-CDS,intron-Distal3.507363.96632K562IGF2BP2
chr5132223547132223633-CDS,intron-Distal3.382694.33455K562LIN28B
chr5132234794132234833-CDS,intron-Distal,intron-Proximal3.705397.66871HepG2BCLAF1
chr5132228003132228097-CDS,intron-Distal,intron-Proximal3.142844.83253K562GRWD1
chr5132234794132234834-CDS,intron-Distal,intron-Proximal5.1711615.46734K562ZNF622
chr5132270366132270468-CDS,intron-Distal3.259897.36807K562UCHL5
chr5132269874132269943-CDS,intron-Distal,intron-Proximal4.355414.94878HepG2GRWD1
chr5132272754132272785-CDS,intron-Distal,intron-Proximal3.233433.39477K562BUD13
chr5132232196132232268-CDS,intron-Distal3.683369.56042K562ZNF622
chr5132232711132232762-CDS,intron-Distal3.741325.42720K562UCHL5
chr5132232081132232171-CDS,intron-Distal3.240166.38443HepG2BCLAF1
chr5132223792132223849-CDS,intron-Distal3.928553.14999HepG2GRWD1
chr5132228764132228810-CDS,intron-Distal3.952013.82000HepG2GRWD1
chr5132232167132232239-CDS,intron-Distal3.686007.09919K562RBM15
chr5132227810132227919-CDS,intron-Distal,intron-Proximal4.033546.20417HepG2BUD13
chr5132232519132232616-CDS,intron-Distal4.119917.71102K562ZNF622
chr5132234056132234085-CDS,intron-Distal,intron-Proximal5.523409.78817HepG2BCLAF1
chr5132232282132232380-CDS,intron-Distal3.739995.99043HepG2GRWD1
chr5132223786132223851-CDS,intron-Distal,intron-Proximal4.2061110.89658HepG2BCLAF1
chr5132227822132227856-CDS,intron-Distal,intron-Proximal4.233758.61602K562AQR
chr5132227869132227955-CDS,intron-Distal3.169403.04831K562RBM15
chr5132240039132240111-CDS,intron-Distal,intron-Proximal3.481345.34337K562AQR
chr5132219035132219097-CDS,intron-Distal3.007554.23325HepG2BCLAF1
chr5132228722132228812-CDS,intron-Distal,intron-Proximal5.9967813.58086HepG2BCLAF1
chr5132227849132227953-CDS,intron-Distal,intron-Proximal3.9009315.86208K562ZNF622
chr5132269866132269936-CDS,intron-Distal,intron-Proximal3.131337.64415K562ZNF622
chr5132222033132222098-CDS,intron-Distal,intron-Proximal4.958397.86385HepG2LIN28B
chr5132270004132270118-CDS,intron-Distal,intron-Proximal3.121015.44739HepG2GRWD1
chr5132232666132232734-CDS,intron-Distal3.774866.81385HepG2BCLAF1
chr5132232762132232838-CDS,intron-Distal,intron-Proximal4.495839.20390K562UCHL5
chr5132234742132234800-CDS,intron-Distal,intron-Proximal3.592936.51619K562AQR
chr5132223545132223630-CDS,intron-Distal3.144688.71292HepG2BCLAF1
chr5132235210132235283-CDS,intron-Distal,intron-Proximal3.810835.35619K562AQR
chr5132240061132240088-CDS,intron-Distal4.527135.24929K562ZNF622
chr5132270589132270643-CDS,intron-Distal,intron-Proximal3.577174.57435K562SF3B4
chr5132269838132269861-CDS,intron-Distal,intron-Proximal3.760343.38114HepG2GRWD1
chr5132234065132234084-CDS,intron-Distal4.037666.47664K562ZNF622
chr5132228721132228740-CDS,intron-Distal,intron-Proximal3.936844.82082K562ZNF622
chr5132223184132223218-CDS,intron-Distal,intron-Proximal4.458623.89565K562PRPF8
chr5132233875132233923-CDS,intron-Distal,intron-Proximal4.708594.13847K562AQR
chr5132228720132228803-CDS,intron-Distal,intron-Proximal4.1877911.10006K562UCHL5
chr5132227989132228095-CDS,intron-Distal3.2470514.47671HepG2BCLAF1
chr5132270474132270549-CDS,intron-Distal3.099805.26696K562UCHL5
chr5132227802132227905-CDS,intron-Distal,intron-Proximal4.3809515.77157HepG2PRPF8
chr5132248638132248811-intron-Distal4.1866014.24414K562KHSRP
chr5132243512132243561-intron-Distal4.328265.14742HepG2HNRNPL
chr5132269766132269836-intron-Distal,intron-Proximal5.052624.13847K562AQR
chr5132296892132296958-intron-Distal3.693073.76025HepG2ILF3
chr5132290159132290239-intron-Distal4.201783.18535HepG2LSM11
chr5132243487132243542-intron-Distal4.492843.74583HepG2PTBP1
chr5132248503132248562-intron-Distal4.419065.44904K562TARDBP
chr5132265887132265998-intron-Distal5.146789.60586K562MATR3
chr5132298302132298366-intron-Distal4.271548.95632HepG2HNRNPM
chr5132245537132245643-intron-Distal5.024603.91475K562PTBP1
chr5132245537132245649-intron-Distal3.168263.99165HepG2PTBP1
chr5132257706132257778-intron-Distal4.351315.53165HepG2ILF3
chr5132290100132290245-intron-Distal4.090407.77622K562LSM11
chr5132274862132274912-intron-Distal3.888703.24590HepG2ILF3
chr5132272690132272732-intron-Distal,intron-Proximal3.953183.02181K562PRPF8
chr5132248274132248355-intron-Distal3.005933.09748HepG2ILF3
chr5132248889132249033-intron-Distal3.413909.27366K562KHSRP
chr5132223053132223132-intron-Distal,intron-Proximal3.313426.61270K562PRPF8
chr5132259007132259107-intron-Distal3.2209011.03870K562PTBP1
chr5132265322132265551-intron-Distal3.333803.35585HepG2QKI
chr5132259008132259117-intron-Distal3.8394310.76940HepG2PTBP1
chr5132223057132223144-intron-Distal,intron-Proximal3.777433.37414K562CSTF2T
chr5132267747132267828-intron-Distal,intron-Proximal4.530217.80986K562PRPF8
chr5132266751132266803-intron-Distal3.720463.03357HepG2HNRNPC
chr5132269726132269822-intron-Distal,intron-Proximal4.977367.21051K562PRPF8
chr5132298940132298951-intron-Distal3.082406.02419K562AQR
chr5132265940132266102-intron-Distal4.290828.23065HepG2PTBP1
chr5132265998132266053-intron-Distal3.323603.56409K562MATR3
chr5132298824132298891-intron-Distal3.7029210.10000HepG2EFTUD2
chr5132265991132266060-intron-Distal5.571866.90462K562PTBP1
chr5132298900132298940-intron-Distal3.964548.61602K562AQR
chr5132272253132272319-intron-Distal4.542236.09994K562KHSRP
chr5132272142132272241-intron-Distal3.375906.59733K562KHSRP
chr5132243411132243457-intron-Distal3.684123.30286HepG2PTBP1
chr5132223067132223150-intron-Distal,intron-Proximal3.261183.20028K562TARDBP
chr5132266165132266255-intron-Distal3.872344.78196HepG2PTBP1
chr5132265863132265991-intron-Distal5.077708.54663K562PTBP1
chr5132298791132298913-intron-Distal4.674777.04874K562EFTUD2
chr5132218850132218982-intron-Distal,intron-Proximal4.270074.58794K562KHSRP
chr5132245524132245609-intron-Distal4.187636.14899HepG2PCBP2
chr5132248159132248217-intron-Distal4.349853.98468HepG2ILF3
chr5132243216132243356-intron-Distal3.191583.62826K562HNRNPL
chr5132298519132298598-intron-Distal4.046053.30440HepG2QKI
chr5132272689132272741-intron-Distal,intron-Proximal3.931034.10688K562KHSRP
chr5132267433132267483-intron-Distal4.216295.19287HepG2HNRNPC
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AFF4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AFF4 is not available on ENCORE database.

  • 116 RBPs can affect the levels of AFF4.  








The Knockdown/knockout RNA-Seq assay for AFF4 is not available on ENCORE database.





116 RBPs can affect the gene expression of AFF4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AFF4ENSG00000072364.83680.868703026.992000.282105.131304.35330HepG2ACO1
AFF4ENSG00000072364.84515.872403920.421100.203902.665701.99060HepG2AUH
AFF4ENSG00000072364.81324.154202311.59150-0.803808.581106.88920HepG2BCCIP
AFF4ENSG00000072364.84007.913103283.579800.287502.549801.97200HepG2BOP1
AFF4ENSG00000072364.82222.750502821.58990-0.344202.752701.98190HepG2CIRBP
AFF4ENSG00000072364.82549.869103575.60420-0.487802.800802.03060HepG2CNOT7
AFF4ENSG00000072364.81959.079402656.96970-0.439603.672902.50130HepG2YBX3
AFF4ENSG00000072364.81111.624301428.10220-0.361402.462901.44630HepG2CSTF2
AFF4ENSG00000072364.83994.884902862.322200.480908.749407.72730HepG2CELF1
AFF4ENSG00000072364.82327.811102799.63120-0.266304.440703.41570HepG2DDX19B
AFF4ENSG00000072364.8940.213601722.01190-0.8730011.170908.72340HepG2DDX28
AFF4ENSG00000072364.84422.542603438.377500.363002.970902.32590HepG2DDX3X
AFF4ENSG00000072364.82876.394702272.684200.339802.647601.88860HepG2DDX55
AFF4ENSG00000072364.82364.979903180.89180-0.427604.374303.11420HepG2DDX5
AFF4ENSG00000072364.83717.979002953.421300.332002.195001.63850HepG2DDX6
AFF4ENSG00000072364.81971.026102896.06580-0.5551013.6304012.36140HepG2DKC1
AFF4ENSG00000072364.81758.437902585.89830-0.5564017.1059015.61770HepG2DNAJC2
AFF4ENSG00000072364.82751.675002081.870300.402302.364501.34610HepG2AGO1
AFF4ENSG00000072364.83261.392901945.572200.7452011.027409.35620HepG2EIF3D
AFF4ENSG00000072364.82308.300203137.98560-0.443003.454802.74160HepG2EIF4A3
AFF4ENSG00000072364.85024.341403055.071300.717605.745404.77810HepG2EIF4B
AFF4ENSG00000072364.82324.724502908.66340-0.323302.800501.98160HepG2EIF4G2
AFF4ENSG00000072364.85411.456703600.148500.587906.386005.26340HepG2FIP1L1
AFF4ENSG00000072364.82464.418301609.429200.614609.422008.01850HepG2FUBP3
AFF4ENSG00000072364.82580.751303165.78210-0.294802.115001.50690HepG2FXR1
AFF4ENSG00000072364.84146.331402936.892200.497404.782303.91850HepG2G3BP1
AFF4ENSG00000072364.81551.253603417.24630-1.1394020.6187019.04220HepG2GPKOW
AFF4ENSG00000072364.81803.521502633.95900-0.546407.755206.75580HepG2HNRNPA1
AFF4ENSG00000072364.83289.425002828.565000.217702.627101.71460HepG2HNRNPA2B1
AFF4ENSG00000072364.82001.421902929.78300-0.549807.562906.46290HepG2HNRNPC
AFF4ENSG00000072364.82265.622302910.41370-0.361306.703605.79780HepG2HNRNPU
AFF4ENSG00000072364.83783.045702985.345400.341602.730202.05860HepG2IGF2BP2
AFF4ENSG00000072364.82605.297302972.89290-0.190402.832902.09260HepG2ILF2
AFF4ENSG00000072364.82432.313402767.18180-0.186102.577901.59230HepG2KIF1C
AFF4ENSG00000072364.83146.271704213.44580-0.421402.591501.39130HepG2KRR1
AFF4ENSG00000072364.83659.665202913.935000.328603.692202.76000HepG2MSI2
AFF4ENSG00000072364.82115.991303325.82750-0.652405.006103.67860HepG2MTPAP
AFF4ENSG00000072364.84273.683203259.719700.390603.245302.56140HepG2NCBP2
AFF4ENSG00000072364.83754.707302903.183700.371002.986702.23860HepG2PABPC4
AFF4ENSG00000072364.81687.408002595.85810-0.6214013.6878012.12490HepG2PPIL4
AFF4ENSG00000072364.84064.665302879.502200.4972012.6689011.66760HepG2PTBP1
AFF4ENSG00000072364.83686.196103092.595800.253204.868904.12760HepG2PUM1
AFF4ENSG00000072364.82735.024703083.21870-0.172902.138401.58000HepG2PUS1
AFF4ENSG00000072364.84257.991003118.536900.449207.936106.96130HepG2QKI
AFF4ENSG00000072364.85395.195202726.803800.984408.634707.43380HepG2RAVER1
AFF4ENSG00000072364.84065.164602830.286000.522308.261507.14610HepG2RBM25
AFF4ENSG00000072364.82518.018301893.056000.411504.926504.13340HepG2RPS19
AFF4ENSG00000072364.82766.740203589.99420-0.375802.254501.53110HepG2RPS3A
AFF4ENSG00000072364.83211.227401734.804400.8883013.3108011.80500HepG2RRP9
AFF4ENSG00000072364.81923.116202591.85760-0.430509.786108.69010HepG2SAFB2
AFF4ENSG00000072364.82581.129203227.90950-0.322602.825902.11190HepG2SF3B1
AFF4ENSG00000072364.84365.630402997.904000.5421015.4311014.20550HepG2SF3B4
AFF4ENSG00000072364.82441.210403022.55340-0.308206.912905.96730HepG2SMN1
AFF4ENSG00000072364.85690.927803591.605200.663905.266804.18000HepG2SNRNP70
AFF4ENSG00000072364.88698.685204249.148301.0335074.0374072.35310HepG2SRFBP1
AFF4ENSG00000072364.86339.825703473.160800.868109.284907.37020HepG2SRSF3
AFF4ENSG00000072364.83579.508802876.444300.315405.264704.44330HepG2SRSF5
AFF4ENSG00000072364.84895.765902545.760700.9433048.8099047.05930HepG2SRSF9
AFF4ENSG00000072364.83653.766302548.133200.519803.479002.11890HepG2SUB1
AFF4ENSG00000072364.82634.261103271.36440-0.312506.409705.53190HepG2SUCLG1
AFF4ENSG00000072364.83513.557802262.564600.634907.641706.60940HepG2SUPV3L1
AFF4ENSG00000072364.82028.344501516.604600.419403.435902.33590HepG2TFIP11
AFF4ENSG00000072364.83140.967302584.413800.281302.911502.05600HepG2TIA1
AFF4ENSG00000072364.81491.537702828.04600-0.9230024.9307023.71420HepG2TIAL1
AFF4ENSG00000072364.81490.870502853.28880-0.9365036.8830035.12110HepG2TRIM56
AFF4ENSG00000072364.83979.742703079.812800.369703.514602.81130HepG2U2AF1
AFF4ENSG00000072364.8895.155601336.66390-0.578405.210004.16060HepG2UCHL5
AFF4ENSG00000072364.81276.293602072.19200-0.699204.207602.95520HepG2UPF2
AFF4ENSG00000072364.82833.489503564.31040-0.331005.532104.09670HepG2UTP18
AFF4ENSG00000072364.82875.996503347.93590-0.219203.035702.41380HepG2UTP3
AFF4ENSG00000072364.82431.574203215.54130-0.403202.426601.40990HepG2XPO5
AFF4ENSG00000072364.83647.312102680.575700.444202.690001.45060HepG2XRCC5
AFF4ENSG00000072364.8936.140802227.24250-1.2505023.5438021.53160HepG2XRN2
AFF4ENSG00000072364.83733.182302666.215200.4855014.9058013.54880HepG2ZC3H8
AFF4ENSG00000072364.84605.323803813.815600.272006.285805.54870HepG2ZNF622
AFF4ENSG00000072364.84277.513403351.956600.351703.317501.96270K562ABCF1
AFF4ENSG00000072364.83492.740003032.203300.203902.665702.10520K562AGGF1
AFF4ENSG00000072364.83905.798903155.143500.307802.924102.25240K562AKAP8L
AFF4ENSG00000072364.84632.927802926.124100.6628010.480709.44840K562AQR
AFF4ENSG00000072364.82722.952303310.50220-0.281903.442602.41390K562ATP5C1
AFF4ENSG00000072364.82741.522302066.174100.407903.678002.67130K562BOP1
AFF4ENSG00000072364.83234.335302334.819500.470104.398402.54150K562BUD13
AFF4ENSG00000072364.82613.239003293.59930-0.333804.978703.46330K562CPEB4
AFF4ENSG00000072364.86732.308804812.654200.484209.430407.68020K562CELF1
AFF4ENSG00000072364.81175.409901597.05410-0.442203.742201.31430K562DDX28
AFF4ENSG00000072364.82752.845803395.16970-0.302604.124703.02620K562DKC1
AFF4ENSG00000072364.81315.26570978.319000.426903.717502.14470K562DNAJC21
AFF4ENSG00000072364.81866.181202152.67580-0.206001.950001.32770K562EIF2S2
AFF4ENSG00000072364.82524.395001601.161400.656706.826705.10640K562EIF3D
AFF4ENSG00000072364.81654.806301963.90880-0.247102.266001.54070K562EIF3G
AFF4ENSG00000072364.82644.227801953.420300.436704.941903.84160K562EIF4A3
AFF4ENSG00000072364.81890.022102409.54370-0.350403.204602.28930K562FIP1L1
AFF4ENSG00000072364.81834.133901301.615900.494704.493302.99470K562FKBP4
AFF4ENSG00000072364.83116.173902235.507000.479105.435104.22870K562FMR1
AFF4ENSG00000072364.82658.310101894.955700.488204.723603.49900K562FTO
AFF4ENSG00000072364.82146.549901736.280100.305903.449401.93120K562FUS
AFF4ENSG00000072364.82389.510902031.480700.234101.845801.33150K562FXR1
AFF4ENSG00000072364.83310.800602064.705100.681103.422802.62020K562G3BP2
AFF4ENSG00000072364.82914.080802167.858800.426706.911905.15880K562GLRX3
AFF4ENSG00000072364.82301.171402868.73890-0.318003.119502.31890K562GRSF1
AFF4ENSG00000072364.82339.567001894.285100.304502.914201.81140K562HNRNPA1
AFF4ENSG00000072364.84113.995402349.562700.808004.247602.63360K562HNRNPA2B1
AFF4ENSG00000072364.81979.868001499.357800.401004.379403.64520K562HNRNPC
AFF4ENSG00000072364.81372.744701981.90730-0.529804.818803.55310K562HNRNPM
AFF4ENSG00000072364.82468.773402097.650800.234902.336001.51480K562HNRNPU
AFF4ENSG00000072364.82142.263803266.79720-0.608708.621207.23570K562HSPD1
AFF4ENSG00000072364.84052.294702739.849300.564503.118901.59820K562ILF2
AFF4ENSG00000072364.81268.63090950.518700.416403.111201.52260K562ILF3
AFF4ENSG00000072364.81214.47250918.559300.402803.054901.49480K562KHDRBS1
AFF4ENSG00000072364.82435.573901791.147000.443302.979202.00590K562KRR1
AFF4ENSG00000072364.85176.721304172.388800.311103.030301.84740K562MSI2
AFF4ENSG00000072364.82977.529202279.209800.385507.539106.26130K562MTPAP
AFF4ENSG00000072364.82537.885801950.561600.379604.808303.18460K562NCBP2
AFF4ENSG00000072364.83189.139002532.469100.332508.519807.31180K562NSUN2
AFF4ENSG00000072364.83468.100202054.600900.755203.824302.60740K562PABPN1
AFF4ENSG00000072364.82904.674502240.119900.374703.211502.15710K562PCBP2
AFF4ENSG00000072364.81847.801302735.34210-0.565907.131005.69870K562PPIG
AFF4ENSG00000072364.81094.838301344.32350-0.296202.217601.41540K562PSIP1
AFF4ENSG00000072364.88096.518204270.921700.9227022.7495020.32910K562PUF60
AFF4ENSG00000072364.84836.168903129.047500.628009.447908.49370K562PUS1
AFF4ENSG00000072364.83214.441001969.730500.706504.920702.93690K562RAVER1
AFF4ENSG00000072364.83692.297603048.776300.276203.455902.80540K562RBM15
AFF4ENSG00000072364.82406.485101957.194000.298002.644201.34690K562RBM25
AFF4ENSG00000072364.84659.761202527.638700.882403.554901.75980K562RBM39
AFF4ENSG00000072364.81994.886602777.05520-0.477202.576701.61290K562RPS3
AFF4ENSG00000072364.83175.528601878.638500.757203.139701.83440K562SF1
AFF4ENSG00000072364.83787.076402498.807900.5997014.0465012.32850K562SF3A3
AFF4ENSG00000072364.82518.874901995.068200.336202.287801.41260K562SF3B1
AFF4ENSG00000072364.81333.759801002.018900.412503.471702.03830K562SLBP
AFF4ENSG00000072364.84182.515902158.040200.954505.231203.37250K562SNRNP200
AFF4ENSG00000072364.83023.438502560.074300.239902.244501.39220K562SRPK2
AFF4ENSG00000072364.83891.773302891.523900.428504.014302.45910K562STAU1
AFF4ENSG00000072364.84482.527502580.983400.796303.773601.99810K562SUPT6H
AFF4ENSG00000072364.82305.960301409.006600.710608.522406.69680K562SUPV3L1
AFF4ENSG00000072364.83307.335502000.105200.725508.790806.66130K562U2AF1
AFF4ENSG00000072364.83704.561902066.087200.8423021.6643019.39000K562U2AF2
AFF4ENSG00000072364.83251.762602297.670900.500907.317105.85420K562WDR3
AFF4ENSG00000072364.83084.923102389.255800.368607.814606.46240K562WDR43
AFF4ENSG00000072364.84435.500202539.279100.804603.964701.90240K562YTHDC2
AFF4ENSG00000072364.84473.209303295.862700.440604.999703.78510K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AFF4 is not available on ENCORE database.





9 RBPs can affect the splicing of AFF4 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAFF4ENSG00000072364.8chr5-132224770132224865132223788132223852132227855132228096-0.196000.000000.00000excludedHepG2U2AF1
SEAFF4ENSG00000072364.8chr5-132224770132224865132223788132223852132227855132228096-0.081000.000740.02467excludedK562AKAP8L
SEAFF4ENSG00000072364.8chr5-1322628121322628991322400591322400961322678691322679140.074000.004290.04714includedHepG2U2AF2
SEAFF4ENSG00000072364.8chr5-132224770132224865132223788132223852132227855132228096-0.085000.000000.00000excludedHepG2U2AF2
SEAFF4ENSG00000072364.8chr5-132224770132224865132223788132223852132227855132228096-0.306000.000000.00000excludedK562AQR
SEAFF4ENSG00000072364.8chr5-132224770132224865132223788132223852132227855132228096-0.121000.000010.00022excludedK562PUS1
SEAFF4ENSG00000072364.8chr5-132233921132234084132232502132232932132234795132234833-0.165000.000030.00087excludedK562PUS1
SEAFF4ENSG00000072364.8chr5-1322628121322628991322400591322400961322678691322679140.098000.000170.01237includedHepG2SFPQ
SEAFF4ENSG00000072364.8chr5-132224770132224865132223788132223852132227855132228096-0.151000.000130.00405excludedK562U2AF1
SEAFF4ENSG00000072364.8chr5-1322733401322734481322727581322728851322989501322993260.116000.000000.00027includedHepG2LARP4
SEAFF4ENSG00000072364.8chr5-132233921132234084132232014132232932132234795132234833-0.097000.003560.08670excludedK562UTP18
SEAFF4ENSG00000072364.8chr5-132224770132224865132223788132223852132227855132228096-0.228000.000000.00001excludedK562U2AF2
SEAFF4ENSG00000072364.8chr5-132224770132224865132223788132223852132227855132228096-0.090000.000530.01664excludedK562AGGF1
A3SSAFF4ENSG00000072364.8chr5-1322190311322192731322190311322192521322207671322208110.162000.006730.03748longerK562AQR
A3SSAFF4ENSG00000072364.8chr5-1322287211322289301322287211322288101322320141322329320.052000.001490.00994longerK562AQR
A3SSAFF4ENSG00000072364.8chr5-1322232121322233761322232121322232841322235371322236740.081000.001880.01219longerK562AQR
A3SSAFF4ENSG00000072364.8chr5-1322247701322248851322247701322248651322278551322280960.077000.009980.05277longerK562AQR
MXEAFF4ENSG00000072364.8chr5-1322287211322288101322320141322329321322275081322280961322339211322340840.203000.000510.005081includedK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AFF4 is not avaliable on ENCORE database.