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KHSRP
eCLIP
in K562
Experiment Information
Sequencing Information
File Information
Data Submission
Experiment Information
Replicate Information
QC Stats
Experiment Information (Status:
Released
)
439
439-control
Exp_UID
439
439
RBPARK_Exp_name
ENCODE_ACCESSION
ENCSR438GZQ
ENCSR305IPT
ENCODE_alias
gene-yeo:439
gene-yeo:439-control
RBP
KHSRP
KHSRP
Cell_Line
K562
K562
Batch
Exp_type
eCLIP
control
ENCODE_Antibody_ID
ENCAB531WWS
ENCAB531WWS
Antibody
RN065PW
RN065PW
Lot_num
1
1
crosslinking_method
ultraviolet irradiation
ultraviolet irradiation
queried_RNP_size_range
175-300
175-300
Self_consistency_hg38
rescue_GRCh38
Status
Released
Released
Project
ENCODE3
ENCODE3
ID
175
201
Replicate Information
Rep_UID
439_01
439_02
439_INPUT
Exp UID
439
439
439
Replicate_type
rep1
rep2
control
ENCODE_ACCESSION
ENCLB149CTU
ENCLB057VON
ENCLB852JGH
ENCODE_alias
gene-yeo:439_01
gene-yeo:439_02
gene-yeo:439_INPUT
Biosample Name
K562_061215
K562_051215
K562_061215
Biosample_ENCODE_Accession
ENCBS318IMK
ENCBS489LOC
ENCBS318IMK
Biosample_ENCODE_Alias
gene-yeo:K562_061215
gene-yeo:K562_051215
gene-yeo:K562_061215
Cell_Line
K562
K562
K562
Culture_Start_Date
2015-06-12
2015-05-12
2015-06-12
Culture_End_Date
2015-06-30
2015-06-11
2015-06-30
Passage
4
4
4
QC Stats
Experiment QC
439
439-control
Self_consistency_hg38
rescue_GRCh38
Replicate QC
Rep_UID
439_01
439_02
439_INPUT
eCT
Usable_reads
Entropy_hg38
Library-Prep
Sequencing
Library-Prep Information
Rep_UID
439_01
439_02
439_INPUT
library_size_selection_method
agarose gel extraction
agarose gel extraction
agarose gel extraction
strand_specificity
reverse
reverse
reverse
inline_barcode_1
C01
A01
none
inline_barcode_2
D08fixed
B06
none
i5_barcode
506
506
505
i7_barcode
702
702
701
Sequencing Information
Rep_UID
439_01
439_02
439_INPUT
seq_read_type
paired-ended
paired-ended
paired-ended
read_length
50
50
50
machine
flowcell
lane
File Information
GRCh38
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
GRCh38/439.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
439
final_peaks
peaks
eCLIP
GRCh38
hg19
file_name
Sample ID
file_format
output_type
assay_type
assembly
genome_annotation
Note
439.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz
439
final_peaks
peaks
eCLIP
hg19
Data Submission Information
No DCC registered objects are available for eCLIP experiment (Exp_UID=439)
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