CTC-349C3.1

General Information

Gene Name       : CTC-349C3.1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTC-349C3.1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTC-349C3.1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTC-349C3.1 RNA is bound by 7 proteins.  







eCLIP assay for CTC-349C3.1 is not avaliable on ENCORE database.





7 proteins are bound to CTC-349C3.1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5134599609134599708+intron-Distal3.799513.25538K562KHSRP
chr5134620231134620255+intron-Distal3.167983.43829K562EXOSC5
chr5134625224134625335+intron-Distal4.032543.92684K562KHSRP
chr5134619635134619675+intron-Distal3.164773.15041K562EXOSC5
chr5134533346134533390+intron-Distal5.2268318.42033K562EXOSC5
chr5134634403134634559+intron-Distal4.822236.34785K562KHSRP
chr5134580363134580487+intron-Distal4.932877.39818K562HNRNPM
chr5134618655134618714+intron-Distal5.068458.36716K562EXOSC5
chr5134655354134655396+intron-Distal4.351334.09073K562SLTM
chr5134619382134619433+intron-Distal4.844806.73731K562EXOSC5
chr5134533501134533543+intron-Distal4.067537.01333K562EXOSC5
chr5134620255134620301+intron-Distal5.281929.35180K562EXOSC5
chr5134533779134533835+intron-Distal4.8153513.19522K562EXOSC5
chr5134534457134534526+intron-Distal3.936824.32448K562PTBP1
chr5134620091134620131+intron-Distal3.735284.61282K562EXOSC5
chr5134618800134618839+intron-Distal4.714545.76685K562EXOSC5
chr5134512424134512480+intron-Distal4.347564.63077K562RBFOX2
chr5134658092134658199+intron-Distal4.177373.75568K562SLTM
chr5134532926134532995+intron-Distal6.0926514.65278K562EXOSC5
chr5134619809134619856+intron-Distal3.593763.14999K562EXOSC5
chr5134619144134619197+intron-Distal3.957256.10949K562EXOSC5
chr5134533668134533708+intron-Distal5.4497010.67163K562EXOSC5
chr5134533876134533906+intron-Distal4.846057.06134K562EXOSC5
chr5134545508134545595+intron-Distal3.376184.65362K562RBFOX2
chr5134512141134512227+intron-Distal5.1844510.23395K562RBFOX2
chr5134533133134533165+intron-Distal5.040307.71312K562EXOSC5
chr5134549577134549632+intron-Distal4.227654.53244K562HNRNPM
chr5134619868134619898+intron-Distal3.522873.72904K562EXOSC5
chr5134551831134552052+intron-Distal4.059777.43032K562MATR3
chr5134534171134534229+intron-Distal5.442068.36716K562EXOSC5
chr5134533957134534032+intron-Distal6.2085017.65810K562EXOSC5
chr5134656057134656107+intron-Distal4.437934.53722K562SLTM
chr5134531739134531785+intron-Distal5.155047.71312K562EXOSC5
chr5134532092134532136+intron-Distal4.686976.08953K562EXOSC5
chr5134512035134512108+intron-Distal4.765817.41867K562RBFOX2
chr5134620169134620226+intron-Distal3.804828.47709K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTC-349C3.1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTC-349C3.1 is not available on ENCORE database.

  • 97 RBPs can affect the levels of CTC-349C3.1.  








The Knockdown/knockout RNA-Seq assay for CTC-349C3.1 is not available on ENCORE database.





97 RBPs can affect the gene expression of CTC-349C3.1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTC-349C3.1ENSG00000224186.429.8718065.08820-1.123602.260301.77480HepG2AKAP1
CTC-349C3.1ENSG00000224186.4105.0939051.411801.031403.922503.02110HepG2AKAP8L
CTC-349C3.1ENSG00000224186.4138.0250053.852801.357706.034604.89730HepG2ASCC1
CTC-349C3.1ENSG00000224186.4165.8581041.850501.9865010.546908.93590HepG2BCLAF1
CTC-349C3.1ENSG00000224186.434.39460101.07490-1.555205.889705.05620HepG2BOP1
CTC-349C3.1ENSG00000224186.4105.7876051.155701.048102.937602.25680HepG2CKAP4
CTC-349C3.1ENSG00000224186.463.6413029.744701.097202.422501.41300HepG2CSTF2
CTC-349C3.1ENSG00000224186.4116.2822049.606201.228904.766403.90290HepG2DDX21
CTC-349C3.1ENSG00000224186.4111.3043044.310101.328703.590402.14580HepG2DDX27
CTC-349C3.1ENSG00000224186.4107.3497059.381100.854103.284202.58460HepG2DNAJC2
CTC-349C3.1ENSG00000224186.4117.7772043.816401.426405.111603.89380HepG2EEF2
CTC-349C3.1ENSG00000224186.4166.49190102.041700.706203.114602.48260HepG2ETF1
CTC-349C3.1ENSG00000224186.4101.6983036.374301.483205.618804.51060HepG2FUBP3
CTC-349C3.1ENSG00000224186.478.3028031.674701.305603.657802.61630HepG2GEMIN5
CTC-349C3.1ENSG00000224186.4130.9977060.486101.114804.350103.56430HepG2HNRNPA1
CTC-349C3.1ENSG00000224186.4130.6159066.834100.966602.626402.03570HepG2HNRNPU
CTC-349C3.1ENSG00000224186.480.6403046.780600.785502.215001.30130HepG2KIF1C
CTC-349C3.1ENSG00000224186.4115.8880056.411001.038603.758802.81950HepG2MSI2
CTC-349C3.1ENSG00000224186.478.1848036.518401.098202.420801.66360HepG2PRPF8
CTC-349C3.1ENSG00000224186.4170.6824040.247802.084204.830304.15060HepG2PTBP1
CTC-349C3.1ENSG00000224186.4496.9984052.139703.2527076.6864074.41730HepG2PUS1
CTC-349C3.1ENSG00000224186.4148.8123043.605901.770809.711908.64190HepG2QKI
CTC-349C3.1ENSG00000224186.444.8992085.28540-0.925602.528802.02760HepG2RBM22
CTC-349C3.1ENSG00000224186.480.8628044.798400.851901.915101.44610HepG2NELFE
CTC-349C3.1ENSG00000224186.481.0594034.610501.227703.598102.90610HepG2RPS19
CTC-349C3.1ENSG00000224186.4110.8633057.692400.942203.365902.48380HepG2RPS2
CTC-349C3.1ENSG00000224186.4176.22000110.551000.672601.968301.31340HepG2SNRNP70
CTC-349C3.1ENSG00000224186.437.6811096.32210-1.354005.254004.62430HepG2SRFBP1
CTC-349C3.1ENSG00000224186.452.81840106.90960-1.017302.740201.74470HepG2SRSF3
CTC-349C3.1ENSG00000224186.4127.4764073.366600.796902.679902.06090HepG2SRSF5
CTC-349C3.1ENSG00000224186.474.9625035.585401.074803.097302.51960HepG2SRSF9
CTC-349C3.1ENSG00000224186.4247.8319083.622301.5673015.2913014.28310HepG2SSB
CTC-349C3.1ENSG00000224186.499.3916047.147601.075802.442901.80230HepG2SUPV3L1
CTC-349C3.1ENSG00000224186.4120.9592039.305501.621607.960207.08830HepG2TAF15
CTC-349C3.1ENSG00000224186.4255.4306097.843701.3843010.448109.17420HepG2TARDBP
CTC-349C3.1ENSG00000224186.491.1601039.853301.193602.966401.86180HepG2TBRG4
CTC-349C3.1ENSG00000224186.4135.4706065.522201.047805.217404.49270HepG2TRIM56
CTC-349C3.1ENSG00000224186.4148.9307062.635501.249502.675801.70450HepG2U2AF2
CTC-349C3.1ENSG00000224186.4159.6595067.538001.241107.618906.55420HepG2UPF1
CTC-349C3.1ENSG00000224186.4156.7560046.411901.755907.904006.69010HepG2XRN2
CTC-349C3.1ENSG00000224186.4118.5329067.665100.808702.616801.96100HepG2ZC3H8
CTC-349C3.1ENSG00000224186.439.1679082.87360-1.081202.999401.76450K562AARS
CTC-349C3.1ENSG00000224186.4157.2458054.397901.531306.210103.73960K562ADAR
CTC-349C3.1ENSG00000224186.485.89080166.71380-0.956804.575903.87780K562AGGF1
CTC-349C3.1ENSG00000224186.4113.74830183.19290-0.687503.001301.96580K562AKAP8
CTC-349C3.1ENSG00000224186.4425.50180103.347602.0416024.9208023.34980K562AQR
CTC-349C3.1ENSG00000224186.489.43720182.01500-1.025105.905804.50730K562ATP5C1
CTC-349C3.1ENSG00000224186.4307.63760139.509701.140809.788107.04240K562CEBPZ
CTC-349C3.1ENSG00000224186.4327.79150173.493000.917806.005403.78670K562CKAP4
CTC-349C3.1ENSG00000224186.4750.73630113.742402.7224036.2413032.73070K562CNOT7
CTC-349C3.1ENSG00000224186.4251.95890133.015500.921502.951102.14100K562CPSF6
CTC-349C3.1ENSG00000224186.4122.1999072.020000.762702.605501.58390K562CSTF2
CTC-349C3.1ENSG00000224186.4476.35660184.168101.3709016.8648014.64370K562CELF1
CTC-349C3.1ENSG00000224186.421.2259061.01200-1.523303.540701.36640K562DAZAP1
CTC-349C3.1ENSG00000224186.4289.32710160.366200.851205.741203.95520K562DDX21
CTC-349C3.1ENSG00000224186.4159.6741059.653001.420408.148805.68330K562DHX30
CTC-349C3.1ENSG00000224186.473.69670186.67000-1.340808.999507.23940K562DKC1
CTC-349C3.1ENSG00000224186.4212.4290074.824401.505308.898706.69530K562EEF2
CTC-349C3.1ENSG00000224186.4258.4799072.268701.8385015.2814012.94810K562EFTUD2
CTC-349C3.1ENSG00000224186.4208.27370107.343600.956104.169802.11240K562ESF1
CTC-349C3.1ENSG00000224186.4203.28320100.952701.009705.768404.51390K562FIP1L1
CTC-349C3.1ENSG00000224186.4139.8158078.747400.828102.996301.81440K562FKBP4
CTC-349C3.1ENSG00000224186.4247.93620114.766001.111203.278002.27530K562FTO
CTC-349C3.1ENSG00000224186.430.0645061.87610-1.041302.362001.79450K562FXR1
CTC-349C3.1ENSG00000224186.4251.2235085.237001.5593014.8607012.55450K562GLRX3
CTC-349C3.1ENSG00000224186.4243.02380126.980000.936403.372802.49850K562GPKOW
CTC-349C3.1ENSG00000224186.4192.32580113.046200.766503.206302.39500K562GRSF1
CTC-349C3.1ENSG00000224186.4266.37450102.107901.383305.619703.10340K562HNRNPA0
CTC-349C3.1ENSG00000224186.4263.3969096.543201.4479013.6078011.51320K562HNRNPA1
CTC-349C3.1ENSG00000224186.4239.14720106.482401.167205.663903.42360K562HNRNPAB
CTC-349C3.1ENSG00000224186.4180.9027090.650300.996704.799804.03390K562HNRNPC
CTC-349C3.1ENSG00000224186.4365.55060160.457301.187809.000305.97280K562IGF2BP1
CTC-349C3.1ENSG00000224186.4219.26290103.945301.076704.509802.66230K562ILF2
CTC-349C3.1ENSG00000224186.4121.2579053.772301.173005.141203.12340K562KHDRBS1
CTC-349C3.1ENSG00000224186.4423.19830108.469901.963908.831307.05080K562KRR1
CTC-349C3.1ENSG00000224186.489.36410176.22750-0.979704.229002.81690K562MAK16
CTC-349C3.1ENSG00000224186.492.59850206.23690-1.155206.912705.34940K562MBNL1
CTC-349C3.1ENSG00000224186.4327.76740159.663601.037507.912506.05530K562MSI2
CTC-349C3.1ENSG00000224186.4199.2307089.613401.152607.603006.31980K562MTPAP
CTC-349C3.1ENSG00000224186.4387.0904099.581001.9586031.1082029.06010K562NSUN2
CTC-349C3.1ENSG00000224186.4333.09870109.274101.6079011.644609.16760K562PABPC1
CTC-349C3.1ENSG00000224186.4399.48660226.427300.819005.515704.33630K562PCBP3
CTC-349C3.1ENSG00000224186.4251.67780173.667000.535202.470301.71580K562POLR2G
CTC-349C3.1ENSG00000224186.4208.93850101.255401.045004.666302.32130K562PPIL4
CTC-349C3.1ENSG00000224186.429.1287054.42230-0.901801.958601.38290K562PTBP1
CTC-349C3.1ENSG00000224186.496.74850163.43420-0.756402.699201.89280K562PUF60
CTC-349C3.1ENSG00000224186.4267.05070101.522501.395208.246005.35760K562RPS3A
CTC-349C3.1ENSG00000224186.4171.5380071.871401.254905.318103.47600K562RRP9
CTC-349C3.1ENSG00000224186.4320.00030103.626201.6266011.450808.32680K562SBDS
CTC-349C3.1ENSG00000224186.429.2487088.05170-1.590003.302901.95540K562SF1
CTC-349C3.1ENSG00000224186.4204.1016098.242501.054804.079303.10010K562SF3A3
CTC-349C3.1ENSG00000224186.4221.76650120.824700.876004.082902.88700K562SF3B1
CTC-349C3.1ENSG00000224186.4209.4142058.658801.8358014.8657012.25910K562SLBP
CTC-349C3.1ENSG00000224186.4256.93480100.649901.3520012.0764010.29390K562SRPK2
CTC-349C3.1ENSG00000224186.423.3427053.34680-1.192402.446501.77430K562SRSF1
CTC-349C3.1ENSG00000224186.4288.04700143.142501.008808.248006.22710K562SRSF7
CTC-349C3.1ENSG00000224186.497.7600051.377900.928003.083601.71790K562SSB
CTC-349C3.1ENSG00000224186.4218.80350101.426001.109104.214602.19260K562STIP1
CTC-349C3.1ENSG00000224186.4188.1817068.034201.467708.108606.32130K562SUPV3L1
CTC-349C3.1ENSG00000224186.479.97860174.20700-1.123105.963104.75000K562SYNCRIP
CTC-349C3.1ENSG00000224186.4229.0433078.176801.5507011.144409.15650K562TIAL1
CTC-349C3.1ENSG00000224186.4158.3472083.072500.930503.092502.08110K562TRIM56
CTC-349C3.1ENSG00000224186.4186.42400118.082800.658702.750201.37360K562TRIP6
CTC-349C3.1ENSG00000224186.481.8367038.499501.087803.447902.55310K562U2AF2
CTC-349C3.1ENSG00000224186.4273.32690184.260100.568802.783301.37920K562UBE2L3
CTC-349C3.1ENSG00000224186.4195.4554072.034601.440008.421006.56880K562UCHL5
CTC-349C3.1ENSG00000224186.4178.70810105.586900.759103.701802.88080K562UPF1
CTC-349C3.1ENSG00000224186.4311.6597090.349001.7863017.6290015.42800K562WDR3
CTC-349C3.1ENSG00000224186.4235.2881093.941401.3245011.8915010.27940K562WDR43
CTC-349C3.1ENSG00000224186.4134.0290073.396700.868702.978801.70840K562XRN2
CTC-349C3.1ENSG00000224186.4408.80770116.416901.8120025.2918022.58940K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTC-349C3.1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTC-349C3.1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTC-349C3.1 is not avaliable on ENCORE database.