VPS13C

General Information

Gene Name       : VPS13C
Gene ID             : ENSG00000129003.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VPS13C)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VPS13CENSG00000129003.1737.2525.3231.29ENCSR000AEF
HepG2VPS13CENSG00000129003.177.9212.2310.07ENCSR985KAT
K562VPS13CENSG00000129003.178.239.008.62ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VPS13C is not avaliable on ENCORE database.



Proteins bound to RNA
  • VPS13C RNA is bound by 34 proteins.  







eCLIP assay for VPS13C is not avaliable on ENCORE database.





34 proteins are bound to VPS13C RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr156215909062159180-3'-UTR,intron-Distal,intron-Proximal,polyA_site5.8321314.74977K562KHSRP
chr156214475562144813-3'-UTR,intron-Distal4.261524.38976HepG2ZC3H11A
chr156216009762160169-3'-UTR,CDS,intron-Distal3.6478211.02317HepG2U2AF2
chr156216012162160198-3'-UTR,CDS,intron-Distal4.3119110.04766K562SF3B4
chr156214461962144731-3'-UTR,intron-Distal3.324535.57639HepG2ZC3H11A
chr156216009762160165-3'-UTR,CDS,intron-Distal3.967434.11564K562U2AF2
chr156222884862228903-CDS,intron-Distal4.356115.91377HepG2FXR2
chr156228320062283236-CDS,intron-Distal5.8728212.09921HepG2BCLAF1
chr156220120162201285-CDS,intron-Distal4.254044.45558HepG2GRWD1
chr156225498962255021-CDS,intron-Distal5.9404013.23445HepG2BCLAF1
chr156230270062302798-CDS,intron-Distal3.7381710.17809K562ZNF622
chr156217644362176465-CDS,intron-Distal3.283825.91405HepG2BCLAF1
chr156232718162327240-CDS,intron-Distal3.226524.71992HepG2EIF3H
chr156224168262241730-CDS,intron-Distal3.292064.48452HepG2FXR2
chr156216074762160892-CDS,intron-Distal,intron-Proximal4.4901712.81393K562PRPF8
chr156230616062306191-CDS,intron-Distal3.833107.83567HepG2BCLAF1
chr156224402262244034-CDS,intron-Distal,intron-Proximal3.498595.97823HepG2BCLAF1
chr156217090462170924-CDS,intron-Distal4.5234635.61179K562RPS3
chr156223288362232957-CDS,intron-Distal3.908373.01531K562YBX3
chr156216088162160969-CDS,intron-Distal3.191775.12722K562BUD13
chr156230090962300942-CDS,intron-Distal4.013063.59941K562UCHL5
chr156216082362160886-CDS,intron-Distal,intron-Proximal3.9643616.25866HepG2PRPF8
chr156223289062232923-CDS,intron-Distal4.2582811.11870HepG2BCLAF1
chr156227706262277116-CDS,intron-Distal4.351316.42098HepG2EIF3H
chr156223421062234265-CDS,intron-Distal3.2685212.85546HepG2BCLAF1
chr156235247762352528-CDS,intron-Distal4.463084.21675K562ZNF622
chr156227082462270845-CDS,intron-Distal,intron-Proximal4.409623.87582K562ZNF622
chr156230266962302742-CDS,intron-Distal,intron-Proximal3.783793.12746HepG2GRWD1
chr156225388162253936-CDS,intron-Distal,intron-Proximal4.012275.50789HepG2EIF3H
chr156225401562254093-CDS,intron-Distal,intron-Proximal3.570015.85622HepG2EIF3H
chr156216419362164223-CDS,intron-Distal4.2571610.24470HepG2BCLAF1
chr156225175062251791-CDS,intron-Distal4.915955.42455HepG2EIF3H
chr156220953962209558-CDS,intron-Distal,intron-Proximal4.196429.69111HepG2BCLAF1
chr156221035862210395-CDS,intron-Distal3.277486.91872HepG2BCLAF1
chr156226931062269369-CDS,intron-Distal3.055584.35275HepG2HLTF
chr156222176862221869-CDS,intron-Distal5.2771929.47766HepG2BCLAF1
chr156216089562160961-CDS,intron-Distal4.420639.53697K562ZNF622
chr156221243662212494-CDS,intron-Distal3.6563411.34372HepG2BCLAF1
chr156225689662256939-CDS,intron-Distal,intron-Proximal3.124143.29348K562YBX3
chr156226649462266539-CDS,intron-Distal3.450304.06757K562UCHL5
chr156226928562269350-CDS,intron-Distal5.5566021.34863HepG2BCLAF1
chr156230267162302702-CDS,intron-Distal5.6479210.24913HepG2BCLAF1
chr156215566862155719-CDS,intron-Distal3.751226.98930HepG2U2AF2
chr156225696162257035-CDS,intron-Distal3.798363.43253K562YBX3
chr156222170362221732-CDS,intron-Distal3.000895.29017HepG2BCLAF1
chr156227706062277110-CDS,intron-Distal4.033789.50935HepG2BCLAF1
chr156227602462276096-CDS,intron-Distal4.380766.42098HepG2EIF3H
chr156216418662164232-CDS,intron-Distal,intron-Proximal4.946778.70311K562DDX24
chr156225689662256914-CDS,intron-Distal,intron-Proximal3.787866.97808HepG2BCLAF1
chr156216084662160973-CDS,intron-Distal,intron-Proximal4.1274712.90299K562UCHL5
chr156226566462265693-CDS,intron-Distal4.395027.97334HepG2BCLAF1
chr156230267062302745-CDS,intron-Distal,intron-Proximal3.172803.17627K562DDX24
chr156226935562269399-CDS,intron-Distal,intron-Proximal4.305544.44454K562UCHL5
chr156235247062352534-CDS,intron-Distal3.244423.77385HepG2NCBP2
chr156216418662164234-CDS,intron-Distal,intron-Proximal5.162604.56100HepG2FXR2
chr156216707762167138-CDS,intron-Distal4.375174.31023HepG2LIN28B
chr156224414362244179-CDS,intron-Distal5.0346411.54096HepG2BCLAF1
chr156225605162256083-CDS,intron-Distal3.271187.33138HepG2BCLAF1
chr156230091262300957-CDS,intron-Distal3.022404.14618K562ZNF622
chr156229276262292768-CDS,intron-Distal,intron-Proximal3.381366.20035HepG2BCLAF1
chr156221460062214630-CDS,intron-Distal4.436353.29312HepG2FXR2
chr156221281262212845-CDS,intron-Distal3.728307.01246HepG2BCLAF1
chr156216084862160895-CDS,intron-Distal,intron-Proximal3.485626.25299K562ZNF622
chr156216544462165553-CDS,intron-Distal,intron-Proximal4.397359.31350HepG2FXR2
chr156228389662283928-CDS,intron-Distal3.611848.66838HepG2BCLAF1
chr156220551962205600-CDS,intron-Distal5.3652714.25738HepG2BCLAF1
chr156230523962305280-CDS,intron-Distal4.4641212.43877HepG2BCLAF1
chr156221160962211643-CDS,intron-Distal4.346599.80976HepG2BCLAF1
chr156225612462256149-CDS,intron-Distal4.033789.09836HepG2BCLAF1
chr156232563962325711-CDS,intron-Distal,intron-Proximal4.315256.83823K562DDX24
chr156216012562160203-CDS,intron-Distal3.784616.57673K562KHSRP
chr156231267762312704-CDS,intron-Distal,intron-Proximal4.261629.80976HepG2BCLAF1
chr156228324962283290-CDS,intron-Distal3.422599.25770HepG2BCLAF1
chr156226649762266545-CDS,intron-Distal4.2847314.24397HepG2BCLAF1
chr156226655162266580-CDS,intron-Distal3.963303.32022K562UCHL5
chr156222884062228905-CDS,intron-Distal4.3446414.92872HepG2BCLAF1
chr156216173662161806-CDS,intron-Distal3.078606.05977K562UCHL5
chr156227614462276187-CDS,intron-Distal3.426083.31745K562ZNF622
chr156232716262327228-CDS,intron-Distal3.755565.08507K562ZNF622
chr156216171162161823-CDS,intron-Distal,intron-Proximal3.857243.16390K562SRSF1
chr156224165762241742-CDS,intron-Distal3.880767.81229HepG2EIF3H
chr156227082562270836-CDS,intron-Distal4.391898.47938HepG2BCLAF1
chr156225496262255048-CDS,intron-Distal3.814153.92527K562FXR1
chr156221279262212845-CDS,intron-Distal3.927864.28265HepG2FXR2
chr156230430562304312-CDS,intron-Distal,intron-Proximal4.457786.65960HepG2BCLAF1
chr156230435362304362-CDS,intron-Distal4.220396.22576HepG2BCLAF1
chr156221422562214232-CDS,intron-Distal3.671636.36847HepG2BCLAF1
chr156216013462160195-CDS,intron-Distal4.7251711.26784HepG2SF3A3
chr156232564062325669-CDS,intron-Distal4.098873.77023K562ZNF622
chr156216545162165499-CDS,intron-Distal4.515525.64870K562DDX24
chr156229961162299643-CDS,intron-Distal5.6850611.85134HepG2BCLAF1
chr156226154162261598-CDS,intron-Distal5.5763018.37338HepG2BCLAF1
chr156226935862269399-CDS,intron-Distal,intron-Proximal3.775884.82082K562ZNF622
chr156221459462214634-CDS,intron-Distal,intron-Proximal4.0389212.21730HepG2BCLAF1
chr156222880362228820-CDS,intron-Distal5.335379.10017HepG2BCLAF1
chr156230085462300882-CDS,intron-Distal3.969619.93259HepG2BCLAF1
chr156221468662214732-CDS,intron-Distal4.994014.99413HepG2EIF3H
chr156215571962155810-CDS,intron-Distal,intron-Proximal4.5835813.80098HepG2U2AF2
chr156216544362165504-CDS,intron-Distal,intron-Proximal3.324664.74755K562ZNF622
chr156230271362302798-CDS,intron-Distal4.7666221.85248HepG2BCLAF1
chr156228398662284001-CDS,intron-Distal,intron-Proximal3.498597.58656HepG2BCLAF1
chr156221247562212525-CDS,intron-Distal3.883783.19863HepG2EIF3D
chr156216544462165551-CDS,intron-Distal,intron-Proximal3.735466.80450K562UCHL5
chr156230523462305269-CDS,intron-Distal,intron-Proximal4.106213.49332HepG2PPIG
chr156232715662327229-CDS,intron-Distal4.2632214.52112HepG2BCLAF1
chr156225378662253857-CDS,intron-Distal,intron-Proximal5.070014.99413HepG2EIF3H
chr156217092462170932-CDS,intron-Distal4.6609736.56742K562RPS3
chr156227611962276189-CDS,intron-Distal3.2027811.99371HepG2BCLAF1
chr156230431262304345-CDS,intron-Distal4.234408.51432HepG2BCLAF1
chr156224406462244133-CDS,intron-Distal5.5738720.21434HepG2BCLAF1
chr156226151262261537-CDS,intron-Distal5.5738710.24913HepG2BCLAF1
chr156220554062205597-CDS,intron-Distal4.981324.98895HepG2FXR2
chr156214848462148561-CDS,intron-Distal,intron-Proximal4.495385.12780HepG2G3BP1
chr156222171662221777-CDS,intron-Distal5.058836.29060HepG2EIF3H
chr156229966462299677-CDS,intron-Distal4.088878.79898HepG2BCLAF1
chr156226159862261645-CDS,intron-Distal5.1390714.71257HepG2BCLAF1
chr156216169862161714-CDS,intron-Distal,intron-Proximal4.374303.36385K562UCHL5
chr156224321262243221-CDS,intron-Distal3.653765.97823HepG2BCLAF1
chr156230088262300937-CDS,intron-Distal4.0950810.78406HepG2BCLAF1
chr156223406662234116-CDS,intron-Distal4.0234011.91109HepG2BCLAF1
chr156216084662160934-CDS,intron-Distal,intron-Proximal3.368204.69671HepG2PPIG
chr156221244262212518-CDS,intron-Distal3.204804.56843HepG2HLTF
chr156218246062182514-CDS,intron-Distal4.779064.13543HepG2FXR2
chr156225165262251702-CDS,intron-Distal4.5603914.21310HepG2BCLAF1
chr156220819262208217-CDS,intron-Distal3.512877.83567HepG2BCLAF1
chr156225497262254988-CDS,intron-Distal4.582758.15024HepG2BCLAF1
chr156221414662214199-CDS,intron-Distal3.832284.10591HepG2EIF3H
chr156221489962214950-CDS,intron-Distal3.196723.35127HepG2FXR2
chr156226654562266585-CDS,intron-Distal4.8981311.54096HepG2BCLAF1
chr156216012562160216-CDS,intron-Distal3.069723.42827HepG2KHSRP
chr156224661962246629-CDS,intron-Distal,intron-Proximal4.404326.65960HepG2BCLAF1
chr156216180662161822-CDS,intron-Distal3.432603.73423K562UCHL5
chr156216418762164234-CDS,intron-Distal,intron-Proximal3.675815.91739K562UCHL5
chr156225082862250878-CDS,intron-Distal4.5803413.76815HepG2BCLAF1
chr156232564662325727-CDS,intron-Distal5.6412922.06086HepG2BCLAF1
chr156230267062302799-CDS,intron-Distal,intron-Proximal4.780816.30939K562IGF2BP1
chr156221468962214728-CDS,intron-Distal4.711729.74753HepG2BCLAF1
chr156226564862265695-CDS,intron-Distal,intron-Proximal4.123683.16051HepG2PPIG
chr156221226562212304-CDS,intron-Distal,intron-Proximal4.319369.37631HepG2BCLAF1
chr156226935062269397-CDS,intron-Distal4.6691115.55279HepG2BCLAF1
chr156232715262327240-CDS,intron-Distal,intron-Proximal3.264335.37652K562BUD13
chr156220122162201237-CDS,intron-Distal3.581147.42278HepG2BCLAF1
chr156215568062155798-CDS,intron-Distal,intron-Proximal3.580573.21003K562U2AF2
chr156231580862315989-CDS,intron-Distal,intron-Proximal3.153427.81851K562KHSRP
chr156230276162302798-CDS,intron-Distal4.895045.26450HepG2EIF3H
chr156215430562154355-intron-Distal4.368884.74221HepG2PTBP1
chr156215588462155926-intron-Distal3.347753.53952HepG2KHSRP
chr156215763762157709-intron-Distal6.5847117.49142HepG2HNRNPL
chr156217452562174624-intron-Distal3.370884.08064K562KHSRP
chr156221141162211488-intron-Distal,intron-Proximal4.895795.26064K562AQR
chr156215615062156194-intron-Distal3.399103.06005HepG2QKI
chr156215430462154416-intron-Distal5.2077612.02468K562PTBP1
chr156215605862156089-intron-Distal4.960487.39957K562KHSRP
chr156218105662181137-intron-Distal5.514506.85401K562QKI
chr156215792162158008-intron-Distal5.8255151.22793HepG2HNRNPL
chr156215584162155861-intron-Distal3.270074.35650K562KHSRP
chr156217341162173519-intron-Distal3.831493.66668K562KHSRP
chr156217124562171351-intron-Distal4.289835.19823K562KHSRP
chr156223516962235233-intron-Distal4.299503.89080K562EXOSC5
chr156215785662157871-intron-Distal6.4931419.18858HepG2HNRNPL
chr156215590262155936-intron-Distal3.931035.56048K562KHSRP
chr156215757562157626-intron-Distal5.8075136.29949K562AGGF1
chr156215789762157957-intron-Distal6.2104923.72475K562HNRNPL
chr156215788862157918-intron-Distal5.9904023.49078HepG2HNRNPL
chr156215615662156293-intron-Distal6.5115834.35691K562QKI
chr156215763762157703-intron-Distal6.1257942.43511K562HNRNPL
chr156215587362155934-intron-Distal3.446917.15738HepG2U2AF2
chr156229198962292092-intron-Distal3.401093.59803HepG2PTBP1
chr156215641462156468-intron-Distal3.672987.01633K562KHSRP
chr156218464562184709-intron-Distal3.058033.35050HepG2SUGP2
chr156230515062305230-intron-Distal,intron-Proximal3.884433.02181K562PRPF8
chr156215586262155902-intron-Distal4.150478.11138K562KHSRP
chr156215797962158004-intron-Distal5.2122510.01120K562HNRNPL
chr156232237962322477-intron-Distal3.499055.35459K562KHSRP
chr156215779962157813-intron-Distal4.5867619.00617K562AGGF1
chr156215573962155821-intron-Distal,intron-Proximal3.567815.14345HepG2KHSRP
chr156215774762157920-intron-Distal3.832339.81489K562GTF2F1
chr156215771662157792-intron-Distal3.009404.20129HepG2AGGF1
chr156215667862156740-intron-Distal4.296868.11138K562KHSRP
chr156215620662156281-intron-Distal5.9525510.44346HepG2QKI
chr156224300262243074-intron-Distal,intron-Proximal4.556885.07478HepG2U2AF2
chr156215787162157880-intron-Distal5.1712113.82054HepG2HNRNPL
chr156215838562158397-intron-Distal3.457955.05215K562HNRNPL
chr156215905362159090-intron-Distal,intron-Proximal4.931036.93191K562KHSRP
chr156215772762157755-intron-Distal6.8238735.25070K562HNRNPL
chr156215771462157727-intron-Distal5.248038.77091K562HNRNPL
chr156220571262205798-intron-Distal,intron-Proximal4.305263.66668K562KHSRP
chr156215770962157753-intron-Distal5.9608151.67848HepG2HNRNPL
chr156215777362157781-intron-Distal4.9767128.88275HepG2HNRNPL
chr156215902962159053-intron-Distal4.966228.06346K562KHSRP
chr156215622362156290-intron-Distal3.6944811.14569K562KHSRP
chr156215659862156649-intron-Distal3.411973.29213HepG2KHSRP
chr156215764162157703-intron-Distal7.5866945.64815K562AGGF1
chr156223489262234985-intron-Distal4.626754.80466K562EXOSC5
chr156216067662160742-intron-Distal4.489514.31512K562KHSRP
chr156215781462157834-intron-Distal5.2711128.60181HepG2HNRNPL
chr156215781362157863-intron-Distal4.3775119.77812K562AGGF1
chr156215772662157844-intron-Distal3.782934.72700HepG2GTF2F1
chr156223139162231477-intron-Distal3.863553.16986HepG2QKI
chr156216158262161683-intron-Distal,intron-Proximal4.015953.02181K562PRPF8
chr156215651462156572-intron-Distal4.104076.59336K562KHSRP
chr156215608362156132-intron-Distal3.878165.18845HepG2U2AF2
chr156218448162184582-intron-Distal4.329814.53347HepG2SUGP2
chr156215795762157979-intron-Distal5.3606011.17843K562HNRNPL
chr156215771162157799-intron-Distal5.4912454.41662K562AGGF1
chr156218109562181155-intron-Distal3.209844.70908HepG2QKI
chr156215778162157802-intron-Distal5.2725033.65533HepG2HNRNPL
chr156215775562157897-intron-Distal6.4262380.40723K562HNRNPL
chr156232592462326009-intron-Distal4.922534.40618K562PTBP1
chr156215620662156307-intron-Distal4.231458.99882HepG2KHSRP
chr156217431962174368-intron-Distal4.371863.35169HepG2U2AF2
chr156215607562156114-intron-Distal3.453504.28919HepG2KHSRP
chr156215899462159029-intron-Distal4.785926.73684K562KHSRP
chr156214910662149206-intron-Distal3.370884.08064K562KHSRP
chr156215631262156371-intron-Distal5.127466.68793HepG2KHSRP
chr156215772562157847-intron-Distal3.391514.95606HepG2XPO5
chr156215776062157773-intron-Distal5.1125833.87599HepG2HNRNPL
chr156218103962181095-intron-Distal3.965326.74598HepG2QKI
chr156215646862156514-intron-Distal3.214554.16517K562KHSRP
chr156232387862323979-intron-Distal3.140953.11628K562KHSRP
chr156215757262157625-intron-Distal5.8948934.50576K562HNRNPL
chr156215631062156369-intron-Distal3.890368.05068K562KHSRP
chr156215784162157856-intron-Distal5.7603824.58201HepG2HNRNPL
chr156215603862156058-intron-Distal3.819957.42482K562KHSRP
chr156215674762156792-intron-Distal3.968515.95946K562KHSRP
chr156215755262157568-intron-Distal4.588536.38553K562HNRNPL
chr156231470662314838-intron-Distal3.057863.31830K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VPS13C is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VPS13C is not available on ENCORE database.

  • 107 RBPs can affect the levels of VPS13C.  








The Knockdown/knockout RNA-Seq assay for VPS13C is not available on ENCORE database.





107 RBPs can affect the gene expression of VPS13C :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VPS13CENSG00000129003.112452.437501856.008000.401903.315402.28760HepG2ABCF1
VPS13CENSG00000129003.112399.547701996.624700.265103.947203.24510HepG2ACO1
VPS13CENSG00000129003.112545.656801838.794300.469203.722203.11780HepG2AKAP1
VPS13CENSG00000129003.112549.344402006.083900.345605.617904.56010HepG2AKAP8L
VPS13CENSG00000129003.11811.242901594.68750-0.975105.399004.07720HepG2BCCIP
VPS13CENSG00000129003.112534.179101996.285200.344106.921805.95500HepG2CKAP4
VPS13CENSG00000129003.111307.140201604.11110-0.295402.088701.48120HepG2CPSF6
VPS13CENSG00000129003.111094.785201510.65320-0.464502.788701.76640HepG2YBX3
VPS13CENSG00000129003.111256.79230985.330500.351002.802101.71920HepG2CSTF2
VPS13CENSG00000129003.111432.722201869.69340-0.384007.686506.53960HepG2DAZAP1
VPS13CENSG00000129003.112435.871901509.169500.6906010.800409.56000HepG2DDX21
VPS13CENSG00000129003.111840.620301476.713600.317702.945802.00030HepG2DDX24
VPS13CENSG00000129003.111593.469202225.60480-0.482005.410303.64450HepG2DDX47
VPS13CENSG00000129003.11965.184501483.33600-0.6200011.060309.73010HepG2DNAJC21
VPS13CENSG00000129003.111133.086401470.25550-0.375806.249705.32600HepG2DNAJC2
VPS13CENSG00000129003.112544.496801454.691400.806608.029707.05620HepG2EIF2S1
VPS13CENSG00000129003.112060.871201565.099200.396902.275301.64780HepG2EIF4B
VPS13CENSG00000129003.113553.627403102.109100.195902.499201.92370HepG2ETF1
VPS13CENSG00000129003.112755.193001874.176400.555805.144404.12420HepG2FIP1L1
VPS13CENSG00000129003.111309.27180768.749000.768109.212207.82320HepG2FUBP3
VPS13CENSG00000129003.112036.233901597.047100.350402.678601.80400HepG2G3BP2
VPS13CENSG00000129003.111848.468501523.037300.279301.990601.39100HepG2HNRNPK
VPS13CENSG00000129003.111306.392301703.20820-0.382707.369506.31680HepG2HNRNPL
VPS13CENSG00000129003.112027.654001529.481600.406703.325702.59130HepG2IGF2BP2
VPS13CENSG00000129003.112558.555701435.035500.834102.434501.51990HepG2IGF2BP3
VPS13CENSG00000129003.111464.019901690.25770-0.207302.817502.07940HepG2ILF2
VPS13CENSG00000129003.112557.448001631.438300.648503.304402.62080HepG2MATR3
VPS13CENSG00000129003.112269.799401669.923400.442703.692402.96490HepG2NCBP2
VPS13CENSG00000129003.111997.793301538.691900.376603.369302.54390HepG2NSUN2
VPS13CENSG00000129003.111213.784502087.42450-0.782205.374304.10600HepG2PABPC1
VPS13CENSG00000129003.112033.398801487.431100.451003.434702.63610HepG2PABPC4
VPS13CENSG00000129003.111002.312201475.89190-0.558309.066307.77980HepG2PPIL4
VPS13CENSG00000129003.112087.332601210.027800.7865011.6462010.15430HepG2PRPF8
VPS13CENSG00000129003.112468.747001401.709900.8165024.6681023.34350HepG2PTBP1
VPS13CENSG00000129003.112354.115201878.575700.325406.019705.21390HepG2PUM1
VPS13CENSG00000129003.111778.103202033.70560-0.193802.217901.65230HepG2PUS1
VPS13CENSG00000129003.112248.245201518.066200.566509.887408.80850HepG2QKI
VPS13CENSG00000129003.112565.276601377.750300.8967014.9914013.48580HepG2RBM25
VPS13CENSG00000129003.112213.171301559.960700.504509.787808.88450HepG2NELFE
VPS13CENSG00000129003.111995.538701452.905600.457708.259307.27920HepG2RECQL
VPS13CENSG00000129003.111996.643601197.026700.738009.247207.92880HepG2RRP9
VPS13CENSG00000129003.11963.230401473.61270-0.6134013.4953012.23220HepG2SAFB2
VPS13CENSG00000129003.112176.911201717.637600.341802.951402.22240HepG2SF3B1
VPS13CENSG00000129003.112574.481401459.343900.8189026.0342024.53560HepG2SF3B4
VPS13CENSG00000129003.112124.509901696.756500.324305.376304.45260HepG2SLBP
VPS13CENSG00000129003.111501.734201718.47550-0.194502.381101.77840HepG2SMN1
VPS13CENSG00000129003.112748.479101911.170800.524103.342802.47900HepG2SNRNP70
VPS13CENSG00000129003.114195.466702928.479400.5186016.3774015.42570HepG2SRFBP1
VPS13CENSG00000129003.112599.020801523.246100.7707024.8918023.78300HepG2SRSF1
VPS13CENSG00000129003.112329.369501747.267200.414707.160506.21860HepG2SRSF5
VPS13CENSG00000129003.112043.654801239.247800.7216020.7749019.51980HepG2SRSF9
VPS13CENSG00000129003.113061.304102542.634200.267704.262403.65510HepG2SSB
VPS13CENSG00000129003.111322.165401994.06950-0.592804.774503.29080HepG2STIP1
VPS13CENSG00000129003.112595.615001987.190900.385207.754006.79950HepG2SUCLG1
VPS13CENSG00000129003.112965.992501369.172201.1151040.6598038.84100HepG2TAF15
VPS13CENSG00000129003.111704.060901258.062300.437705.267804.12660HepG2TIA1
VPS13CENSG00000129003.112128.457201607.863600.404605.195804.55520HepG2TIAL1
VPS13CENSG00000129003.111253.711001622.26060-0.371805.473304.73170HepG2TRIM56
VPS13CENSG00000129003.112067.740901603.371200.366803.252902.57630HepG2U2AF1
VPS13CENSG00000129003.112366.592601829.879800.371002.415501.63750HepG2UBE2L3
VPS13CENSG00000129003.11668.02330922.18590-0.465202.056001.40140HepG2UCHL5
VPS13CENSG00000129003.112372.338102031.932200.223402.826102.12050HepG2UPF1
VPS13CENSG00000129003.11802.123901429.75680-0.833902.498701.54830HepG2UPF2
VPS13CENSG00000129003.111643.066401961.75380-0.255803.286102.64330HepG2UTP3
VPS13CENSG00000129003.111375.381402053.52440-0.578304.269202.90360HepG2XPO5
VPS13CENSG00000129003.112626.543201815.411600.532803.635202.16630HepG2XRCC5
VPS13CENSG00000129003.11719.419401536.52260-1.094806.934605.80000HepG2XRN2
VPS13CENSG00000129003.111638.258701324.432000.306704.381103.56670HepG2ZC3H8
VPS13CENSG00000129003.111441.991302374.00580-0.7193019.7564018.35610K562AGGF1
VPS13CENSG00000129003.111973.269502608.69290-0.402704.162202.90240K562AKAP8
VPS13CENSG00000129003.111727.854302470.26540-0.515706.320205.30520K562AKAP8L
VPS13CENSG00000129003.111408.017001976.50840-0.489303.822303.15490K562AQR
VPS13CENSG00000129003.111924.359002591.91210-0.429606.600405.11170K562ATP5C1
VPS13CENSG00000129003.112199.569802837.05160-0.367204.372502.85310K562CCDC124
VPS13CENSG00000129003.111750.407102177.52220-0.315003.849302.53700K562CPEB4
VPS13CENSG00000129003.111370.255301671.25080-0.286502.465101.48440K562DDX3X
VPS13CENSG00000129003.111941.481902252.95120-0.214702.420901.80610K562DDX47
VPS13CENSG00000129003.111253.473101694.42200-0.434906.112003.91890K562DDX6
VPS13CENSG00000129003.111819.392702658.15260-0.5470011.089309.09650K562DKC1
VPS13CENSG00000129003.11988.752401292.01110-0.385902.829301.90500K562EFTUD2
VPS13CENSG00000129003.111088.815001544.54060-0.504407.168705.89890K562EIF3G
VPS13CENSG00000129003.111260.504201746.03610-0.470105.046403.93590K562EIF4A3
VPS13CENSG00000129003.111274.556301572.39230-0.303003.087101.84790K562EIF4B
VPS13CENSG00000129003.113491.283502800.747000.317805.138003.87630K562EIF4G2
VPS13CENSG00000129003.111197.953801524.10630-0.347403.750002.21310K562EWSR1
VPS13CENSG00000129003.111065.011801363.18130-0.356102.861901.99780K562FIP1L1
VPS13CENSG00000129003.111141.786901815.80270-0.6693014.0734012.81300K562FXR1
VPS13CENSG00000129003.112412.233801700.558400.504303.690002.84760K562G3BP2
VPS13CENSG00000129003.111287.060701771.56280-0.460905.036304.01740K562GRSF1
VPS13CENSG00000129003.111358.147002036.12300-0.584208.407206.49050K562HNRNPL
VPS13CENSG00000129003.11562.963301121.22390-0.9940012.3372010.02320K562HNRNPM
VPS13CENSG00000129003.111390.799001848.20150-0.410203.842202.90770K562HSPD1
VPS13CENSG00000129003.112212.205102621.55230-0.244902.081101.37580K562KIF1C
VPS13CENSG00000129003.111572.806802297.47230-0.546707.674106.24830K562MAGOH
VPS13CENSG00000129003.111714.873102509.48420-0.549306.880704.88580K562MAK16
VPS13CENSG00000129003.111845.932002292.89660-0.312803.052302.08070K562MATR3
VPS13CENSG00000129003.112020.727602936.80300-0.539408.049006.33390K562MBNL1
VPS13CENSG00000129003.111568.726602058.48770-0.392002.332201.53850K562NAA15
VPS13CENSG00000129003.11766.333801052.35020-0.457603.260201.66510K562NUSAP1
VPS13CENSG00000129003.111728.392802245.50810-0.377604.346902.62200K562PCBP1
VPS13CENSG00000129003.111986.741801269.855500.645606.049604.81450K562PCBP3
VPS13CENSG00000129003.111406.12520974.060500.529506.674105.44070K562POLR2G
VPS13CENSG00000129003.11860.337601547.46290-0.8469012.6680010.51900K562PPIG
VPS13CENSG00000129003.11636.414901257.27350-0.9823014.1902012.48090K562PRPF8
VPS13CENSG00000129003.11604.23070958.28280-0.665407.532905.89750K562PSIP1
VPS13CENSG00000129003.111439.964402232.09630-0.6324010.634609.39180K562PTBP1
VPS13CENSG00000129003.112380.519703055.87760-0.360302.893902.05930K562PUF60
VPS13CENSG00000129003.111455.687602449.79150-0.7510010.955309.92410K562PUS1
VPS13CENSG00000129003.111424.707502386.98090-0.7445016.8353015.35620K562RBM15
VPS13CENSG00000129003.111168.783702140.62000-0.8730015.5092013.32140K562RBM22
VPS13CENSG00000129003.11578.54410874.33460-0.595806.365704.86560K562RCC2
VPS13CENSG00000129003.11643.21570828.84310-0.365802.448101.49790K562SRFBP1
VPS13CENSG00000129003.111661.773102188.13570-0.397004.279103.40530K562SRSF1
VPS13CENSG00000129003.111576.486602066.37360-0.390403.628102.39330K562SRSF5
VPS13CENSG00000129003.111321.203601593.22270-0.270102.616301.37680K562SSB
VPS13CENSG00000129003.112251.323901788.598200.331802.665501.33670K562SSRP1
VPS13CENSG00000129003.11754.40710976.95550-0.372903.276702.38370K562SYNCRIP
VPS13CENSG00000129003.111258.065002214.67160-0.8159012.4145010.72580K562TARDBP
VPS13CENSG00000129003.111469.498902136.26530-0.539807.828706.34310K562TIA1
VPS13CENSG00000129003.111704.793502095.99060-0.298002.383501.38500K562TRA2A
VPS13CENSG00000129003.11788.32620979.22070-0.312802.203201.37360K562TRIM56
VPS13CENSG00000129003.111340.991901702.66600-0.344503.564302.65190K562U2AF2
VPS13CENSG00000129003.111616.902202483.86760-0.619403.448201.95310K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VPS13C is not available on ENCORE database.





5 RBPs can affect the splicing of VPS13C :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEVPS13CENSG00000129003.11chr15-6219806762198186621823636218259962199462621995890.128000.002130.03845includedK562SRSF1
SEVPS13CENSG00000129003.11chr15-621763266217646862174794621749356218236362182599-0.258000.002060.03738excludedHepG2U2AF1
SEVPS13CENSG00000129003.11chr15-6214904462149132621484846214860862155638621557270.056000.005850.08164includedK562U2AF2
SEVPS13CENSG00000129003.11chr15-621763266217646862174794621749356218236362182599-0.147000.001930.07367excludedK562HNRNPK
A3SSVPS13CENSG00000129003.11chr15-6215563862155798621556386215572762160857621609720.306000.000040.00642longerHepG2SF3A3
MXEVPS13CENSG00000129003.11chr15-62254947622550516225603362256150622545696225473762256897622570600.167000.003340.021871includedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for VPS13C is not avaliable on ENCORE database.