AGTRAP

General Information

Gene Name       : AGTRAP
Gene ID             : ENSG00000177674.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AGTRAP)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878AGTRAPENSG00000177674.151.444.793.12ENCSR000AEF
HepG2AGTRAPENSG00000177674.1530.1413.5121.82ENCSR985KAT
K562AGTRAPENSG00000177674.1571.5054.7763.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AGTRAP is not avaliable on ENCORE database.



Proteins bound to RNA
  • AGTRAP RNA is bound by 15 proteins.  







eCLIP assay for AGTRAP is not avaliable on ENCORE database.





15 proteins are bound to AGTRAP RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11181021411810274+3'-UTR,CDS,intron-Proximal4.392294.01795HepG2LARP4
chr11181026911810338+3'-UTR,CDS,intron-Proximal4.413553.61011HepG2AKAP1
chr11180749611807590+3'-UTR,CDS,intron-Distal,intron-Proximal3.631379.39295K562YBX3
chr11181050411810560+3'-UTR,intron-Distal4.612836.38589HepG2AKAP1
chr11181027411810337+3'-UTR,CDS,intron-Proximal3.622014.91517HepG2LARP4
chr11181059811810684+3'-UTR,intron-Distal3.381069.34167K562UPF1
chr11181058611810746+3'-UTR,intron-Distal4.6040515.89726HepG2UPF1
chr11181042411810490+3'-UTR,intron-Distal5.113576.71037HepG2UPF1
chr11181068711810791+3'-UTR,intron-Distal5.580298.40676K562UPF1
chr11181069211810736+3'-UTR,intron-Distal4.184774.03377HepG2LARP4
chr11180749611807527+3'-UTR,CDS,intron-Distal,intron-Proximal3.917315.82148K562DDX3X
chr11180744111807505+3'-UTR,CDS,intron-Distal,intron-Proximal5.343425.13952K562SF3B4
chr11181068711810745+3'-UTR,intron-Distal4.259844.13758HepG2AKAP1
chr11180862211808670+3'-UTR,CDS,intron-Proximal3.206263.30795HepG2SND1
chr11181049011810550+3'-UTR,intron-Distal4.644975.14974HepG2UPF1
chr11181056011810687+3'-UTR,intron-Distal5.335399.44144HepG2AKAP1
chr11181033711810408+3'-UTR,CDS,intron-Distal,intron-Proximal3.345745.55036HepG2LARP4
chr11180853211808622+3'-UTR,CDS3.724344.67599HepG2SND1
chr11181049711810564+3'-UTR,intron-Distal3.487576.07797HepG2LARP4
chr11181024011810412+3'-UTR,CDS,intron-Distal,intron-Proximal4.638939.82827HepG2UPF1
chr11181036311810430+3'-UTR,intron-Distal4.621075.18972HepG2AKAP1
chr11181059911810657+3'-UTR,intron-Distal3.573994.08867HepG2LARP4
chr11180751911807586+3'-UTR,CDS,intron-Distal6.6525314.20920HepG2DDX3X
chr11179619411796287+5'-UTR,CDS3.451943.77385HepG2NCBP2
chr11179620211796262+5'-UTR5.9670815.72211K562DDX3X
chr11179619211796293+5'-UTR,CDS,intron-Proximal4.9940736.09275HepG2DDX3X
chr11179626211796295+5'-UTR,CDS,intron-Proximal4.2964311.82232K562DDX3X
chr11180585811805895+CDS,intron-Distal,intron-Proximal3.9073310.65333K562DDX3X
chr11180589111805953+CDS,intron-Distal,intron-Proximal5.360595.65342K562AQR
chr11179633611796469+intron-Distal,intron-Proximal4.085953.70701HepG2PRPF4
chr11180259511802641+intron-Distal5.8682416.06251K562PTBP1
chr11180977511809819+intron-Distal4.556583.70058HepG2XPO5
chr11180254911802651+intron-Distal5.6768010.89838HepG2PTBP1
chr11180107511801185+intron-Distal4.531394.19401K562HNRNPK
chr11179635511796452+intron-Distal,intron-Proximal3.461814.28282K562EFTUD2
chr11180136111801464+intron-Distal4.217544.09469HepG2XPO5
chr11179629511796334+intron-Proximal4.127143.02181K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AGTRAP is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AGTRAP is not available on ENCORE database.

  • 92 RBPs can affect the levels of AGTRAP.  








The Knockdown/knockout RNA-Seq assay for AGTRAP is not available on ENCORE database.





92 RBPs can affect the gene expression of AGTRAP :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AGTRAPENSG00000177674.11263.82640404.83080-0.617703.690202.08150HepG2ATP5C1
AGTRAPENSG00000177674.11410.11620554.43030-0.435003.282502.54510HepG2AUH
AGTRAPENSG00000177674.11315.55950493.61830-0.645504.012403.09080HepG2CIRBP
AGTRAPENSG00000177674.11467.74540366.836800.350502.500401.78970HepG2DAZAP1
AGTRAPENSG00000177674.11424.27840312.635800.440403.571102.63930HepG2DDX19B
AGTRAPENSG00000177674.1187.66940182.57680-1.058403.883702.73550HepG2DDX59
AGTRAPENSG00000177674.11401.12220216.757700.887909.075307.85400HepG2DNAJC21
AGTRAPENSG00000177674.11327.85990214.842300.609704.893904.06600HepG2DNAJC2
AGTRAPENSG00000177674.11317.92880496.67150-0.643602.976002.36110HepG2EIF2S1
AGTRAPENSG00000177674.11343.68360548.77850-0.675103.761003.02030HepG2EIF4A3
AGTRAPENSG00000177674.11345.01560534.50740-0.631502.897002.19360HepG2EIF4B
AGTRAPENSG00000177674.11271.24880361.92240-0.416102.282101.50940HepG2EIF4G1
AGTRAPENSG00000177674.1157.26970161.06140-1.491804.654103.34430HepG2FTO
AGTRAPENSG00000177674.11256.75250373.17820-0.539503.289402.43710HepG2FUBP3
AGTRAPENSG00000177674.11387.91150513.75670-0.405402.062101.48380HepG2G3BP1
AGTRAPENSG00000177674.11338.51020182.244800.893205.567104.68070HepG2GPKOW
AGTRAPENSG00000177674.11431.55730322.221300.421402.842902.11660HepG2HNRNPF
AGTRAPENSG00000177674.11335.49000520.60380-0.633903.361802.59500HepG2HNRNPK
AGTRAPENSG00000177674.11424.89150334.154800.346502.307901.68420HepG2HNRNPL
AGTRAPENSG00000177674.11310.41740522.16480-0.750303.298102.56680HepG2IGF2BP2
AGTRAPENSG00000177674.11231.79670142.611400.700703.136801.84950HepG2KHDRBS1
AGTRAPENSG00000177674.11387.50810236.734200.710904.149202.66420HepG2LIN28B
AGTRAPENSG00000177674.11368.73150554.19760-0.587803.257002.54560HepG2MAGOH
AGTRAPENSG00000177674.11756.27980557.249300.440502.475801.87580HepG2MATR3
AGTRAPENSG00000177674.11340.05970570.33480-0.746004.197703.42300HepG2NCBP2
AGTRAPENSG00000177674.1182.64080136.71280-0.726202.072401.32050HepG2PABPC1
AGTRAPENSG00000177674.11357.85730507.73310-0.504702.021001.39530HepG2PABPC4
AGTRAPENSG00000177674.11322.04540465.66820-0.532004.705303.94890HepG2PCBP1
AGTRAPENSG00000177674.11112.34410196.17690-0.804202.530901.75700HepG2PRPF8
AGTRAPENSG00000177674.11502.78870347.241500.533903.857303.16640HepG2PUF60
AGTRAPENSG00000177674.11447.09340368.617900.278301.803801.30230HepG2PUM1
AGTRAPENSG00000177674.11501.77410368.345100.445903.083302.37440HepG2PUM2
AGTRAPENSG00000177674.11430.70570344.303500.322902.031001.48440HepG2PUS1
AGTRAPENSG00000177674.11365.33850513.20850-0.490303.755003.04400HepG2QKI
AGTRAPENSG00000177674.1153.18270226.83220-2.092603.912003.07860HepG2RAVER1
AGTRAPENSG00000177674.11267.36850465.74380-0.800707.394406.33630HepG2RBM25
AGTRAPENSG00000177674.11465.80560347.132800.424102.379601.73820HepG2RPLP0
AGTRAPENSG00000177674.11232.19800150.276300.627602.482001.72280HepG2RPS3A
AGTRAPENSG00000177674.11420.79400256.122300.716202.855601.76240HepG2RPS5
AGTRAPENSG00000177674.11110.44040194.04100-0.813102.582001.82030HepG2RRP9
AGTRAPENSG00000177674.11290.65670215.336500.432602.376201.77250HepG2SAFB2
AGTRAPENSG00000177674.11215.63070339.21800-0.653602.894902.20490HepG2SF3A3
AGTRAPENSG00000177674.11438.63810600.94790-0.454204.008603.43830HepG2SRFBP1
AGTRAPENSG00000177674.11280.30750514.92440-0.8774010.256909.47450HepG2SRSF1
AGTRAPENSG00000177674.11113.62820185.24080-0.705102.330201.42140HepG2SRSF3
AGTRAPENSG00000177674.11427.41230342.857300.317901.908901.37590HepG2SRSF5
AGTRAPENSG00000177674.11301.46210418.89820-0.474603.742803.12250HepG2SRSF9
AGTRAPENSG00000177674.11398.38190521.72540-0.389103.142202.60380HepG2SSB
AGTRAPENSG00000177674.11504.31330389.917300.371102.818002.19190HepG2SUCLG1
AGTRAPENSG00000177674.11318.42280462.76890-0.539302.194401.68510HepG2TAF15
AGTRAPENSG00000177674.11259.67190169.545000.614902.920802.17840HepG2TARDBP
AGTRAPENSG00000177674.11355.45810234.958500.597203.972303.39600HepG2TIAL1
AGTRAPENSG00000177674.11406.50600237.057000.777907.911007.03500HepG2TRIM56
AGTRAPENSG00000177674.11469.18930339.249700.467703.020102.10300HepG2TUFM
AGTRAPENSG00000177674.11159.05340387.52820-1.2848011.6197010.30270HepG2U2AF1
AGTRAPENSG00000177674.11189.90410290.44480-0.613003.964403.26650HepG2UTP3
AGTRAPENSG00000177674.11192.16280299.48180-0.640102.714102.04820HepG2ZC3H8
AGTRAPENSG00000177674.11526.411801071.99660-1.0260014.6462013.44540K562AQR
AGTRAPENSG00000177674.111180.804501552.52170-0.394804.629703.35810K562CELF1
AGTRAPENSG00000177674.11685.83930943.04950-0.459505.751104.86250K562DDX47
AGTRAPENSG00000177674.111259.94150769.779500.7107010.676709.40360K562EIF2S2
AGTRAPENSG00000177674.11294.17010613.14840-1.059607.420705.73220K562EIF3A
AGTRAPENSG00000177674.11657.95000495.631300.408602.796701.94330K562FIP1L1
AGTRAPENSG00000177674.11251.24290546.80620-1.121903.694902.36650K562FKBP4
AGTRAPENSG00000177674.11246.70680334.91910-0.441002.052501.31210K562FMR1
AGTRAPENSG00000177674.11136.86040283.88460-1.052606.979205.45920K562FTO
AGTRAPENSG00000177674.1140.48410167.36680-2.0476012.7029010.95400K562G3BP2
AGTRAPENSG00000177674.11539.04800757.53430-0.490904.976103.46720K562GLRX3
AGTRAPENSG00000177674.11714.143101019.76220-0.513905.447503.96120K562HNRNPA1
AGTRAPENSG00000177674.11900.828601129.39370-0.326202.712401.82820K562HNRNPU
AGTRAPENSG00000177674.111062.90890671.908700.661607.310006.03370K562HSPD1
AGTRAPENSG00000177674.11445.51720682.01010-0.614302.838401.39790K562ILF2
AGTRAPENSG00000177674.11532.59530714.33640-0.423603.822802.83030K562KIF1C
AGTRAPENSG00000177674.11143.65960268.34820-0.901504.117802.95870K562KRR1
AGTRAPENSG00000177674.11538.33210683.78060-0.345002.433201.44690K562MAK16
AGTRAPENSG00000177674.11642.83750796.44750-0.309102.689001.89090K562MTPAP
AGTRAPENSG00000177674.11408.32760541.58840-0.407502.803201.56630K562NCBP2
AGTRAPENSG00000177674.11717.33560456.853400.650802.913001.57420K562NONO
AGTRAPENSG00000177674.11512.51220882.42970-0.783907.694806.30810K562PCBP3
AGTRAPENSG00000177674.11454.08570676.82740-0.575805.504204.37540K562POLR2G
AGTRAPENSG00000177674.11870.36630562.703500.629106.324204.99740K562PPIG
AGTRAPENSG00000177674.11417.23950667.55970-0.678005.238204.52150K562PUS1
AGTRAPENSG00000177674.1151.77460159.67500-1.624806.722304.42610K562RAVER1
AGTRAPENSG00000177674.11524.29750650.40480-0.311002.068501.54230K562RBM15
AGTRAPENSG00000177674.11410.49190666.52340-0.699304.033202.09900K562RPS3A
AGTRAPENSG00000177674.11451.73790623.55250-0.465003.200201.63650K562SDAD1
AGTRAPENSG00000177674.11184.66340298.89010-0.694703.388902.31000K562SF3B1
AGTRAPENSG00000177674.11261.94190173.972400.590303.408102.45590K562SF3B4
AGTRAPENSG00000177674.11487.77630663.92570-0.444803.066901.73200K562SLBP
AGTRAPENSG00000177674.11275.94360526.68780-0.932603.590502.12350K562SNRNP200
AGTRAPENSG00000177674.11710.77600894.60310-0.331903.417802.39080K562SRPK2
AGTRAPENSG00000177674.11587.22980770.36230-0.391603.337301.66330K562SRSF9
AGTRAPENSG00000177674.1175.85730164.28530-1.114804.059502.14910K562TAF15
AGTRAPENSG00000177674.11565.16240380.786000.569603.343402.43180K562TIA1
AGTRAPENSG00000177674.11449.41660641.54420-0.513503.252901.32730K562TRNAU1AP
AGTRAPENSG00000177674.1192.43720162.16570-0.810903.191502.00470K562U2AF1
AGTRAPENSG00000177674.1177.16340167.50390-1.118206.407305.19060K562U2AF2
AGTRAPENSG00000177674.11632.07260802.88320-0.345102.507401.67170K562WDR3
AGTRAPENSG00000177674.11581.31320834.90010-0.522307.107305.80900K562WDR43
AGTRAPENSG00000177674.11346.25860619.98130-0.840403.466101.62680K562YTHDC2
AGTRAPENSG00000177674.11833.816201207.64230-0.534405.717204.40330K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AGTRAP is not available on ENCORE database.





6 RBPs can affect the splicing of AGTRAP :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAGTRAPENSG00000177674.11chr1+118061831180628011805859118058941180749611807602-0.149000.000040.07541excludedK562IGF2BP1
SEAGTRAPENSG00000177674.11chr1+1180618311806280118058591180589411807496118076020.262000.000420.09187includedK562PCBP1
SEAGTRAPENSG00000177674.11chr1+1180618311806280118058591180589411807496118076020.314000.000020.01893includedK562KHSRP
SEAGTRAPENSG00000177674.11chr1+118060441180628011805859118058941180749611807602-0.114000.002150.04646excludedHepG2SRSF1
SEAGTRAPENSG00000177674.11chr1+118060441180628011805859118058941180749611807602-0.135000.000100.01205excludedHepG2TIAL1
SEAGTRAPENSG00000177674.11chr1+118061831180628011805859118058941180749611807602-0.196000.000000.00000excludedK562SRSF7

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AGTRAP is not avaliable on ENCORE database.