MED1

General Information

Gene Name : MED1
Gene ID : ENSG00000125686.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MED1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MED1	ENSG00000125686.11	36.64	34.07	35.36	ENCSR000AEF
HepG2	MED1	ENSG00000125686.11	27.19	39.57	33.38	ENCSR985KAT
K562	MED1	ENSG00000125686.11	39.44	40.22	39.83	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MED1 is not avaliable on ENCORE database.

Proteins bound to RNA

MED1 RNA is bound by 24 proteins.

CanvasJS.com

eCLIP assay for MED1 is not avaliable on ENCORE database.

24 proteins are bound to MED1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	37596145	37596180	-	intron-Distal	6.56656	41.45441	K562	PTBP1
chr17	37596180	37596194	-	intron-Distal	7.29997	34.60019	K562	PTBP1
chr17	37561025	37561118	-	3'-UTR,intron-Distal	4.53232	32.59019	K562	FAM120A
chr17	37560595	37560686	-	3'-UTR,intron-Distal	5.17888	22.98418	K562	PUM2
chr17	37563297	37563394	-	3'-UTR,intron-Distal	4.19904	20.00496	K562	FAM120A
chr17	37596166	37596194	-	intron-Distal	6.47846	17.18131	HepG2	PTBP1
chr17	37596155	37596166	-	intron-Distal	6.40595	16.12958	HepG2	PTBP1
chr17	37595381	37595457	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.65438	14.09634	HepG2	PRPF8
chr17	37595399	37595465	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.91290	12.01630	K562	AQR
chr17	37565420	37565526	-	3'-UTR,CDS,intron-Distal	3.85475	11.91955	HepG2	HLTF
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 79 entries

eCLIP assay for MED1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MED1 is not available on ENCORE database.
105 RBPs can affect the levels of MED1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MED1 is not available on ENCORE database.

105 RBPs can affect the gene expression of MED1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MED1	ENSG00000125686.7	1382.52820	2947.08700	-1.09200	47.22180	44.93360	K562	AGGF1
MED1	ENSG00000125686.7	3989.49120	2102.58920	0.92390	42.44610	41.07820	HepG2	SRSF1
MED1	ENSG00000125686.7	1131.08000	3041.45500	-1.42710	39.13790	37.04920	K562	PUS1
MED1	ENSG00000125686.7	1596.69090	3066.53680	-0.94150	20.23370	18.13670	K562	AKAP8L
MED1	ENSG00000125686.7	3081.15630	1639.56720	0.91010	18.66610	16.36300	K562	EIF4A3
MED1	ENSG00000125686.7	1794.24270	2963.19780	-0.72380	17.75130	16.22670	K562	RBM15
MED1	ENSG00000125686.7	2750.17770	1705.07690	0.68960	17.59250	16.17810	K562	FXR1
MED1	ENSG00000125686.7	4314.36510	2217.03730	0.96040	16.71080	15.16660	HepG2	MAGOH
MED1	ENSG00000125686.7	887.66530	2079.23230	-1.22800	16.35570	14.62220	HepG2	ASCC1
MED1	ENSG00000125686.7	1876.68180	3254.50490	-0.79430	15.42750	12.92020	K562	KIF1C
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 120 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MED1 is not available on ENCORE database.

10 RBPs can affect the splicing of MED1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	MED1	ENSG00000125686.7	chr17	-	37579949	37580074			37579579	37579698	37580879	37580991	-0.13900	0.00000	0.00000	excluded	HepG2	U2AF1
SE	MED1	ENSG00000125686.7	chr17	-	37579949	37580074			37579579	37579698	37580879	37580991	-0.12900	0.00000	0.00000	excluded	HepG2	U2AF2
SE	MED1	ENSG00000125686.7	chr17	-	37575969	37576171			37571503	37571592	37579579	37579698	-0.15800	0.00000	0.00000	excluded	K562	AQR
SE	MED1	ENSG00000125686.7	chr17	-	37579949	37580074			37579579	37579698	37580879	37580991	-0.06900	0.00000	0.00002	excluded	HepG2	SF3A3
SE	MED1	ENSG00000125686.7	chr17	-	37579949	37580074			37579579	37579698	37580879	37580991	-0.17200	0.00000	0.00021	excluded	K562	U2AF2
MXE	MED1	ENSG00000125686.7	chr17	-	37580879	37580991	37583953	37584043	37579579	37579698	37587367	37587441	-0.13900	0.00000	0.00000	2included	K562	AQR
SE	MED1	ENSG00000125686.7	chr17	-	37579949	37580074			37579579	37579698	37580879	37580991	-0.07800	0.00002	0.00035	excluded	K562	AQR
MXE	MED1	ENSG00000125686.7	chr17	-	37579949	37580074	37580879	37581104	37579579	37579698	37583953	37584043	0.07300	0.00004	0.00053	1included	K562	AQR
A3SS	MED1	ENSG00000125686.7	chr17	-	37587367	37587488			37587367	37587441	37588194	37588269	0.06000	0.00016	0.00135	longer	K562	AQR
SE	MED1	ENSG00000125686.7	chr17	-	37601663	37601822			37599802	37599881	37604050	37604157	-0.09600	0.00020	0.00674	excluded	HepG2	SRSF1

Showing 1 to 10 of 26 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MED1

General Information

Functions

Localization

Domains (AlphaFold: MED1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MED1 is not avaliable on ENCORE database.

24 proteins are bound to MED1 RNA:

eCLIP assay for MED1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MED1 is not available on ENCORE database.

105 RBPs can affect the gene expression of MED1 :

The Knockdown/knockout RNA-Seq assay for MED1 is not available on ENCORE database.

10 RBPs can affect the splicing of MED1 :

The Knockdown/knockout RNA-Seq assay for MED1 is not avaliable on ENCORE database.