ZMYM6

General Information

Gene Name       : ZMYM6
Gene ID             : ENSG00000163867.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZMYM6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZMYM6ENSG00000163867.1612.1511.1011.62ENCSR000AEF
HepG2ZMYM6ENSG00000163867.162.925.874.39ENCSR985KAT
K562ZMYM6ENSG00000163867.1611.9914.5113.25ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZMYM6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZMYM6 RNA is bound by 12 proteins.  







eCLIP assay for ZMYM6 is not avaliable on ENCORE database.





12 proteins are bound to ZMYM6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr13544721435447274-3'-UTR,intron-Distal4.4275110.62286K562PUM2
chr13544941435449455-3'-UTR,CDS,intron-Distal,intron-Proximal4.321233.02572K562SND1
chr13544948535449549-3'-UTR,CDS,intron-Distal,intron-Proximal5.356525.29846HepG2DDX3X
chr13544768135447717-3'-UTR,CDS,intron-Distal3.567163.49838K562SND1
chr13544758835447723-3'-UTR,CDS,intron-Distal4.987387.63354HepG2SND1
chr13544949335449549-3'-UTR,CDS,intron-Distal,intron-Proximal5.256355.39850K562DDX3X
chr13549615035496262-5'-UTR,CDS,intron-Distal4.452038.47938HepG2BCLAF1
chr13548600335486069-CDS,intron-Distal,intron-Proximal4.480334.37348HepG2BCLAF1
chr13547750935477607-CDS,intron-Distal,intron-Proximal4.589154.50986K562IGF2BP1
chr13547811635478179-CDS,intron-Distal,intron-Proximal4.190814.70109K562U2AF2
chr13545786935457962-CDS,intron-Distal3.881365.06180HepG2BCLAF1
chr13549617035496228-CDS,intron-Distal3.345843.31745K562ZNF622
chr13547803135478062-CDS,intron-Distal,intron-Proximal3.991343.06595HepG2BCLAF1
chr13546956835469607-CDS,intron-Distal,intron-Proximal4.406384.34038HepG2BCLAF1
chr13547742535477525-CDS,intron-Distal,intron-Proximal3.996514.45914HepG2PRPF8
chr13547654735476636-CDS,intron-Distal3.033784.23325HepG2BCLAF1
chr13547446135474526-CDS,intron-Distal,intron-Proximal4.491349.30195HepG2BCLAF1
chr13547263135472700-CDS,intron-Distal,intron-Proximal4.153765.79432HepG2BCLAF1
chr13547753035477605-CDS,intron-Distal3.107204.23325HepG2BCLAF1
chr13547604735476094-CDS,intron-Distal,intron-Proximal4.872824.78529HepG2BCLAF1
chr13547073435470837-CDS,intron-Distal4.165306.23296HepG2BCLAF1
chr13548069635480766-CDS,intron-Distal,intron-Proximal3.898813.39716K562U2AF2
chr13547435035474422-CDS,intron-Distal,intron-Proximal5.198866.58593HepG2BCLAF1
chr13547811135478182-CDS,intron-Distal,intron-Proximal5.457299.05715HepG2U2AF2
chr13547748735477530-CDS,intron-Distal,intron-Proximal3.599413.27569HepG2BCLAF1
chr13547843635478553-intron-Distal3.136046.17398K562KHSRP
chr13547962735479699-intron-Distal3.421354.30679K562KHSRP
chr13545759735457672-intron-Distal4.911135.54528HepG2QKI
chr13545753635457579-intron-Distal3.992626.64835K562QKI
chr13545080235450873-CDS,intron-Distal4.593915.35746HepG2DDX3X
chr13545676635456839-intron-Distal4.053323.34609K562TARDBP
chr13548022635480292-intron-Distal,intron-Proximal3.739363.06150K562KHSRP
chr13548022135480278-intron-Distal,intron-Proximal3.331468.59716K562TIA1
chr13545757935457685-intron-Distal7.6095138.35584K562QKI
chr13545080735450927-5'-UTR,CDS,intron-Distal,intron-Proximal3.377987.12525K562DDX3X
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZMYM6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZMYM6 is not available on ENCORE database.

  • 82 RBPs can affect the levels of ZMYM6.  








The Knockdown/knockout RNA-Seq assay for ZMYM6 is not available on ENCORE database.





82 RBPs can affect the gene expression of ZMYM6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZMYM6ENSG00000271741.1111.8734072.413500.627401.875201.35660HepG2ACO1
ZMYM6ENSG00000271741.180.3090039.998701.005502.565701.80740HepG2ASCC1
ZMYM6ENSG00000163867.12707.90290506.408900.483103.793303.01210HepG2AUH
ZMYM6ENSG00000163867.12527.13790405.263200.379202.541401.80070HepG2CALR
ZMYM6ENSG00000271741.172.9854038.001400.941502.120901.43850HepG2CIRBP
ZMYM6ENSG00000271741.140.46040114.05850-1.495203.571802.69670HepG2CNOT7
ZMYM6ENSG00000271741.1245.69290165.409300.570702.425701.77600HepG2CPSF6
ZMYM6ENSG00000271741.199.7921035.041801.509704.788703.45200HepG2YBX3
ZMYM6ENSG00000271741.1142.2863050.351301.498605.194304.29330HepG2DDX21
ZMYM6ENSG00000163867.12365.87550254.886600.521402.949602.00340HepG2DDX24
ZMYM6ENSG00000271741.172.3951039.777400.863801.824901.31310HepG2DDX6
ZMYM6ENSG00000163867.12351.92270239.872200.552902.520701.46920HepG2AGO1
ZMYM6ENSG00000271741.1112.2480038.241201.553405.563904.74040HepG2EIF2S1
ZMYM6ENSG00000271741.191.2415042.262101.110202.573001.95610HepG2EIF4A3
ZMYM6ENSG00000163867.12660.02190480.296800.458502.863402.01410HepG2EIF4G1
ZMYM6ENSG00000271741.146.78610105.61100-1.174603.456502.20910HepG2GRSF1
ZMYM6ENSG00000271741.190.9998034.757701.388404.424803.63270HepG2HNRNPA1
ZMYM6ENSG00000271741.180.4409039.223101.036102.341101.65910HepG2ILF2
ZMYM6ENSG00000271741.144.82060108.82100-1.279703.251701.93620HepG2KHDRBS1
ZMYM6ENSG00000163867.12454.12050297.382600.610704.782903.73960HepG2MSI2
ZMYM6ENSG00000271741.139.36140158.66270-2.0111011.039609.63220HepG2NSUN2
ZMYM6ENSG00000271741.1112.7480056.064101.007903.414102.26400HepG2PCBP2
ZMYM6ENSG00000163867.12378.93770255.396400.569103.168102.30970HepG2PRPF8
ZMYM6ENSG00000163867.12477.76050372.597100.358602.373901.86070HepG2PTBP1
ZMYM6ENSG00000271741.1160.2822075.778601.080702.043201.46120HepG2PUM2
ZMYM6ENSG00000271741.1157.7214048.443801.702903.970601.74350HepG2RBM17
ZMYM6ENSG00000163867.12840.79790485.971900.7908011.5411010.63590HepG2RBM22
ZMYM6ENSG00000163867.12363.71810252.645600.525602.587101.82460HepG2RRP9
ZMYM6ENSG00000271741.147.00490108.85150-1.211503.450701.71750HepG2SBDS
ZMYM6ENSG00000271741.1105.4054040.187101.391005.132103.86150HepG2SERBP1
ZMYM6ENSG00000163867.12544.61490406.440900.422101.927801.36220HepG2SF3A3
ZMYM6ENSG00000271741.1275.73410144.048300.936604.992604.06860HepG2SF3A3
ZMYM6ENSG00000271741.1257.28810177.086700.538802.281901.63860HepG2SF3B1
ZMYM6ENSG00000163867.12533.65080387.942100.460003.564502.90570HepG2SF3B4
ZMYM6ENSG00000271741.1114.9609068.517700.746502.965202.24120HepG2SLBP
ZMYM6ENSG00000271741.1108.4745039.892401.443102.536001.91540HepG2SMN1
ZMYM6ENSG00000163867.12810.59020548.882600.562406.928206.23520HepG2SRFBP1
ZMYM6ENSG00000163867.12528.28760404.919200.383602.543502.08510HepG2SRSF1
ZMYM6ENSG00000271741.181.0283031.014801.385401.760701.30310HepG2SRSF9
ZMYM6ENSG00000163867.12625.88950476.551800.393203.440502.88270HepG2SSB
ZMYM6ENSG00000271741.1158.3054097.883800.693502.598201.35360HepG2SSRP1
ZMYM6ENSG00000271741.140.8231099.79250-1.289503.557502.29570HepG2STIP1
ZMYM6ENSG00000163867.12257.90250356.35010-0.466502.758502.25840HepG2TIAL1
ZMYM6ENSG00000271741.1110.4733037.345801.564605.072504.43760HepG2TIAL1
ZMYM6ENSG00000163867.12198.06830359.55240-0.860205.736804.97830HepG2TRIM56
ZMYM6ENSG00000271741.186.5045037.641201.200402.166401.65520HepG2TRIM56
ZMYM6ENSG00000271741.16.5788032.69890-2.313304.177502.26400HepG2TROVE2
ZMYM6ENSG00000163867.12528.55780314.238800.750103.508802.80620HepG2U2AF1
ZMYM6ENSG00000271741.1150.5377048.832501.624102.340801.44140HepG2U2AF2
ZMYM6ENSG00000271741.112.3381045.56510-1.884802.760701.75770HepG2UPF2
ZMYM6ENSG00000271741.122.3620049.02830-1.132601.969001.34960HepG2XRN2
ZMYM6ENSG00000163867.12404.74040264.741900.612305.233704.35820HepG2ZC3H8
ZMYM6ENSG00000271741.1237.10770140.498800.754903.389102.80130HepG2ZNF622
ZMYM6ENSG00000271741.170.52920188.87610-1.421102.043801.54200K562AGGF1
ZMYM6ENSG00000271741.153.38740196.51630-1.880102.882402.21560K562AKAP8L
ZMYM6ENSG00000163867.12874.736301173.90510-0.424403.107601.74080K562CIRBP
ZMYM6ENSG00000163867.122512.983302099.364700.259302.587401.64400K562CELF1
ZMYM6ENSG00000271741.1271.51100365.40950-0.428502.269601.38590K562CELF1
ZMYM6ENSG00000163867.121614.465701402.258400.203202.010101.43910K562DDX47
ZMYM6ENSG00000271741.191.67110141.84510-0.629802.273601.44660K562EFTUD2
ZMYM6ENSG00000271741.1192.06660116.330300.723303.860102.40710K562EIF2S1
ZMYM6ENSG00000163867.12746.32900921.93230-0.304802.554201.85790K562EIF2S2
ZMYM6ENSG00000163867.121046.53730837.052300.322102.151001.39340K562FMR1
ZMYM6ENSG00000163867.12924.53360673.710700.456505.102603.21710K562FUS
ZMYM6ENSG00000163867.12707.09600939.35920-0.409804.344903.61100K562FXR1
ZMYM6ENSG00000163867.121426.937301016.438600.489303.253002.47610K562G3BP2
ZMYM6ENSG00000271741.186.52960149.13740-0.785402.183301.56580K562G3BP2
ZMYM6ENSG00000163867.121075.37150881.943000.286002.436601.37160K562GLRX3
ZMYM6ENSG00000163867.12519.82310771.16420-0.569004.096802.94970K562HNRNPM
ZMYM6ENSG00000271741.1178.28040105.787600.752903.188901.51420K562LSM11
ZMYM6ENSG00000163867.12874.358701151.10290-0.396702.842101.99030K562MAGOH
ZMYM6ENSG00000163867.12894.772901148.85380-0.360602.416501.56130K562MATR3
ZMYM6ENSG00000163867.12589.449501056.64750-0.842104.464303.12530K562PABPN1
ZMYM6ENSG00000271741.1446.42070312.628000.513902.708201.88540K562PCBP3
ZMYM6ENSG00000271741.1103.65870173.76710-0.745303.267501.56050K562PKM
ZMYM6ENSG00000163867.12855.620301064.32880-0.314902.050701.34850K562PPIG
ZMYM6ENSG00000163867.12766.608401118.32620-0.544804.560403.72820K562PTBP1
ZMYM6ENSG00000271741.128.26650195.01810-2.786404.658603.97760K562PUS1
ZMYM6ENSG00000163867.12748.887701072.65080-0.518403.959402.93780K562RBM22
ZMYM6ENSG00000271741.183.83470131.22790-0.646502.256201.50170K562RBM22
ZMYM6ENSG00000271741.184.89060141.41450-0.736303.014601.61660K562RBM25
ZMYM6ENSG00000163867.12479.83850641.71390-0.419402.837001.83270K562RCC2
ZMYM6ENSG00000163867.12789.470501029.92930-0.383602.182901.30350K562RPS3
ZMYM6ENSG00000163867.121211.702001016.600400.253202.242001.50190K562SF3A3
ZMYM6ENSG00000163867.121035.43250746.997900.471002.183201.33050K562SF3B1
ZMYM6ENSG00000271741.1286.5615090.951801.655608.671905.91120K562SFPQ
ZMYM6ENSG00000163867.12455.36720608.33400-0.417802.618301.62950K562SRFBP1
ZMYM6ENSG00000163867.12707.530601096.26890-0.631704.619503.71010K562SRSF1
ZMYM6ENSG00000163867.121480.451201125.002800.396003.060601.73430K562STAU1
ZMYM6ENSG00000271741.1210.62440102.493301.039003.384701.75180K562SUPT6H
ZMYM6ENSG00000271741.179.81830133.57170-0.742802.499201.53880K562SUPV3L1
ZMYM6ENSG00000163867.12702.107201109.63270-0.660305.918504.85650K562TARDBP
ZMYM6ENSG00000163867.12837.059401070.33000-0.354702.524601.74740K562TIA1
ZMYM6ENSG00000163867.12503.00520718.70530-0.514803.851202.69830K562TRIM56
ZMYM6ENSG00000163867.121475.78310985.700600.582205.126003.54360K562U2AF1
ZMYM6ENSG00000163867.121340.814801017.869800.397504.276803.28220K562U2AF2
ZMYM6ENSG00000163867.121269.311801092.401200.216402.031001.40950K562UPF1
ZMYM6ENSG00000271741.1219.62610314.99310-0.520302.509901.37040K562UTP3
ZMYM6ENSG00000271741.1162.84210255.72760-0.651103.430501.37940K562ZNF800
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZMYM6 is not available on ENCORE database.





2 RBPs can affect the splicing of ZMYM6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZMYM6ENSG00000163867.12chr1-3547826835478340354780313547818235480297354804890.206000.000000.00000includedK562U2AF1
SEZMYM6ENSG00000163867.12chr1-354849533548520335480588354807633548598335486068-0.139000.004340.07292excludedK562U2AF1
A3SSZMYM6ENSG00000163867.12chr1-3547435235474571354743523547452535476047354762300.074000.003030.01860longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZMYM6 is not avaliable on ENCORE database.