POLDIP2

General Information

Gene Name       : POLDIP2
Gene ID             : ENSG00000004142.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: POLDIP2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POLDIP2ENSG00000004142.1175.7590.2382.99ENCSR000AEF
HepG2POLDIP2ENSG00000004142.1190.4079.4884.94ENCSR985KAT
K562POLDIP2ENSG00000004142.1191.6092.0891.84ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POLDIP2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • POLDIP2 RNA is bound by 14 proteins.  







eCLIP assay for POLDIP2 is not avaliable on ENCORE database.





14 proteins are bound to POLDIP2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr172667484326674922-3'-UTR,intron-Distal4.057709.18768K562PABPC4
chr172667472326674783-3'-UTR,intron-Distal3.312833.41666HepG2UPF1
chr172667423726674283-3'-UTR,intron-Distal4.391663.31904K562IGF2BP1
chr172667465526674723-3'-UTR,intron-Distal3.156024.87121HepG2UPF1
chr172667492226675017-3'-UTR,intron-Distal3.017387.32916K562PABPC4
chr172667467326674747-3'-UTR,intron-Distal3.360574.30970K562IGF2BP2
chr172667511726675168-3'-UTR,CDS,intron-Distal3.356456.82132K562YBX3
chr172667868726678706-CDS,intron-Distal,intron-Proximal3.476615.35822K562TROVE2
chr172667779326677819-CDS,intron-Distal,intron-Proximal4.022994.68542K562TROVE2
chr172668026626680278-CDS,intron-Distal,intron-Proximal4.196624.48692K562YBX3
chr172668446126684528-CDS,intron-Distal,intron-Proximal4.4289720.95821HepG2DDX3X
chr172667778526677838-CDS,intron-Distal,intron-Proximal3.466294.10684HepG2AQR
chr172667865226678710-CDS,intron-Distal,intron-Proximal3.463793.96535HepG2AQR
chr172667864126678706-CDS,intron-Distal,intron-Proximal3.669558.16221HepG2PRPF8
chr172668068026680724-CDS,intron-Distal,intron-Proximal4.073683.31283K562PRPF8
chr172667777626677832-CDS,intron-Distal,intron-Proximal3.066613.42396HepG2U2AF2
chr172667752126677582-CDS,intron-Distal4.022994.68542K562TROVE2
chr172668023026680282-CDS,intron-Distal,intron-Proximal3.218904.22621HepG2PRPF8
chr172668440126684443-CDS,intron-Distal,intron-Proximal4.079254.46401K562DDX3X
chr172668002326680106-CDS,intron-Distal,intron-Proximal3.730167.67169K562SF3B4
chr172668444326684536-CDS,intron-Distal,intron-Proximal4.749777.63469K562DDX3X
chr172668427226684367-CDS,intron-Distal,intron-Proximal4.922738.44604HepG2PRPF8
chr172668439226684545-CDS,intron-Distal,intron-Proximal3.074955.50706HepG2NCBP2
chr172668000426680045-CDS,intron-Distal3.064535.58482K562YBX3
chr172668438526684461-CDS,intron-Distal,intron-Proximal4.8999754.63117HepG2DDX3X
chr172668435026684381-CDS,intron-Distal,intron-Proximal4.282406.48236HepG2DDX3X
chr172667868126678690-intron-Distal,intron-Proximal5.038673.62536K562AQR
chr172667766226677763-intron-Distal,intron-Proximal4.815406.67793HepG2EFTUD2
chr172667768126677763-intron-Distal,intron-Proximal3.379598.51251HepG2PRPF8
chr172667769426677761-intron-Distal,intron-Proximal5.002103.90539HepG2RBM22
chr172667864526678681-intron-Distal,intron-Proximal5.353345.17615K562AQR
chr172668060126680689-intron-Distal,intron-Proximal5.343296.15027K562EFTUD2
chr172667770026677775-intron-Distal,intron-Proximal3.932625.26367K562AQR
chr172667770326677785-intron-Distal,intron-Proximal4.809374.62947HepG2AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POLDIP2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POLDIP2 is not available on ENCORE database.

  • 87 RBPs can affect the levels of POLDIP2.  








The Knockdown/knockout RNA-Seq assay for POLDIP2 is not available on ENCORE database.





87 RBPs can affect the gene expression of POLDIP2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POLDIP2ENSG00000004142.73109.267302235.809000.475704.157303.01990HepG2ABCF1
POLDIP2ENSG00000004142.71488.231501825.89290-0.295004.184203.46520HepG2ACO1
POLDIP2ENSG00000004142.72168.802303279.49780-0.596605.771005.03460HepG2AKAP1
POLDIP2ENSG00000004142.72119.926202713.50190-0.356102.777901.99220HepG2ASCC1
POLDIP2ENSG00000004142.72469.131702835.36590-0.199502.145101.52710HepG2AUH
POLDIP2ENSG00000004142.72984.242301420.695401.0707024.4315022.93540HepG2BOP1
POLDIP2ENSG00000004142.71134.230701627.11480-0.520607.121005.95860HepG2CALR
POLDIP2ENSG00000004142.72126.478901825.369200.220202.975702.29060HepG2CKAP4
POLDIP2ENSG00000004142.72049.583001688.631000.279404.241003.23410HepG2DDX19B
POLDIP2ENSG00000004142.7977.400901583.27640-0.695909.773508.58160HepG2DDX21
POLDIP2ENSG00000004142.72275.317703141.49540-0.465404.277303.51390HepG2DDX3X
POLDIP2ENSG00000004142.71048.861701826.65400-0.800409.968408.61130HepG2DDX55
POLDIP2ENSG00000004142.71917.383202698.64580-0.493104.071603.33460HepG2DDX6
POLDIP2ENSG00000004142.72113.953601746.851900.275103.465402.71980HepG2DKC1
POLDIP2ENSG00000004142.71336.888402594.23770-0.9564015.1852013.86650HepG2EIF2S1
POLDIP2ENSG00000004142.71873.166301495.327200.324903.162102.01230HepG2EIF3G
POLDIP2ENSG00000004142.71789.294702791.38240-0.641605.271604.34250HepG2EIF4B
POLDIP2ENSG00000004142.71720.950503255.36970-0.9196035.9373034.21530HepG2ETF1
POLDIP2ENSG00000004142.72504.377901784.110900.489106.495605.21780HepG2EWSR1
POLDIP2ENSG00000004142.7904.765801137.58210-0.330402.969301.75080HepG2FAM120A
POLDIP2ENSG00000004142.71782.265402257.50090-0.341002.243201.54610HepG2FIP1L1
POLDIP2ENSG00000004142.71297.427302021.23990-0.639609.598308.18030HepG2FUBP3
POLDIP2ENSG00000004142.72295.965302892.65500-0.333302.520301.85840HepG2FXR1
POLDIP2ENSG00000004142.71930.884702683.33400-0.474804.120303.31770HepG2G3BP1
POLDIP2ENSG00000004142.72291.860802848.73920-0.313802.361101.54240HepG2G3BP2
POLDIP2ENSG00000004142.7858.332201478.44560-0.784508.766607.66950HepG2GPKOW
POLDIP2ENSG00000004142.71423.659902374.28960-0.7379019.9350017.88460HepG2HNRNPA2B1
POLDIP2ENSG00000004142.71412.856001794.89700-0.345302.960902.24670HepG2HNRNPC
POLDIP2ENSG00000004142.71860.532502353.31920-0.339006.577405.58240HepG2HNRNPL
POLDIP2ENSG00000004142.7989.693502559.71870-1.370907.898406.30030HepG2IGF2BP3
POLDIP2ENSG00000004142.72019.935702743.45810-0.441702.945501.90600HepG2KHSRP
POLDIP2ENSG00000004142.73226.876002258.518800.514704.043203.03560HepG2LARP4
POLDIP2ENSG00000004142.71385.634201826.50290-0.398504.568103.54890HepG2MSI2
POLDIP2ENSG00000004142.72219.343502978.38840-0.424403.521202.81090HepG2NCBP2
POLDIP2ENSG00000004142.71815.858902561.75230-0.496508.204906.91460HepG2NOL12
POLDIP2ENSG00000004142.7725.938601168.78390-0.687103.999802.91990HepG2PABPC1
POLDIP2ENSG00000004142.71780.097202652.41710-0.575406.045704.99020HepG2PABPC4
POLDIP2ENSG00000004142.71519.040701764.89620-0.216402.212101.44680HepG2PARN
POLDIP2ENSG00000004142.71872.791402694.82300-0.525005.845405.01550HepG2PCBP1
POLDIP2ENSG00000004142.71343.055701590.32070-0.243802.285801.60880HepG2PPIL4
POLDIP2ENSG00000004142.71014.923901408.59680-0.472904.345403.35730HepG2PRPF8
POLDIP2ENSG00000004142.71985.654502741.90970-0.465605.481304.76590HepG2PTBP1
POLDIP2ENSG00000004142.72198.951302595.94200-0.239403.891203.21360HepG2PUM1
POLDIP2ENSG00000004142.71897.686802594.03800-0.451006.498705.48650HepG2PUM2
POLDIP2ENSG00000004142.72157.076302969.92570-0.461304.623203.84630HepG2QKI
POLDIP2ENSG00000004142.72202.251502720.88870-0.305103.780603.19980HepG2RBM22
POLDIP2ENSG00000004142.71843.530302695.25870-0.548006.915705.88960HepG2RBM25
POLDIP2ENSG00000004142.72569.787703051.62640-0.247902.162801.67260HepG2NELFE
POLDIP2ENSG00000004142.72256.670302841.91370-0.332703.490202.80740HepG2RECQL
POLDIP2ENSG00000004142.71280.166201751.38860-0.452204.512503.50430HepG2RPS2
POLDIP2ENSG00000004142.7997.145801393.34280-0.482703.686502.79600HepG2RRP9
POLDIP2ENSG00000004142.72379.784802854.99310-0.262701.942101.43210HepG2SF3B4
POLDIP2ENSG00000004142.71945.426503073.14730-0.6596021.0079019.96380HepG2SRFBP1
POLDIP2ENSG00000004142.71760.055502424.17170-0.461905.408504.68080HepG2SRSF9
POLDIP2ENSG00000004142.73220.316202668.225800.271204.323403.71240HepG2SSB
POLDIP2ENSG00000004142.7829.964701117.38740-0.429002.541101.49310HepG2STIP1
POLDIP2ENSG00000004142.71435.282501818.25540-0.341202.609901.95080HepG2SUPV3L1
POLDIP2ENSG00000004142.71705.373902678.06880-0.651109.596708.65400HepG2TAF15
POLDIP2ENSG00000004142.71789.353302461.15430-0.459904.745903.66050HepG2TIA1
POLDIP2ENSG00000004142.72248.530401732.551500.376004.632104.01980HepG2TIAL1
POLDIP2ENSG00000004142.74028.722703268.134700.301802.997101.70390K562APOBEC3C
POLDIP2ENSG00000004142.71936.389103069.93590-0.664804.290903.59060K562AQR
POLDIP2ENSG00000004142.71583.313902060.25730-0.379906.470104.97690K562BCLAF1
POLDIP2ENSG00000004142.74429.829602716.492100.7054024.2877022.54970K562DDX47
POLDIP2ENSG00000004142.71187.094001505.95620-0.343202.693501.37050K562DNAJC21
POLDIP2ENSG00000004142.72369.534203019.54410-0.349705.397404.44190K562EIF2S2
POLDIP2ENSG00000004142.72005.680001424.499000.493502.596101.62540K562EIF3A
POLDIP2ENSG00000004142.72216.362701189.972200.8972019.0685016.91820K562EIF3G
POLDIP2ENSG00000004142.71956.357702397.00560-0.293102.691401.44570K562EXOSC5
POLDIP2ENSG00000004142.73147.852602326.840400.435904.924603.76990K562FIP1L1
POLDIP2ENSG00000004142.71290.480401603.50740-0.313302.235201.46430K562FMR1
POLDIP2ENSG00000004142.7998.184101359.08850-0.445303.456702.42720K562FTO
POLDIP2ENSG00000004142.72343.753601382.081000.7619019.6685018.16830K562FXR1
POLDIP2ENSG00000004142.7693.778201102.44450-0.668203.456602.64910K562G3BP2
POLDIP2ENSG00000004142.7983.312601504.74830-0.613805.615804.48880K562GPKOW
POLDIP2ENSG00000004142.72054.404602480.11420-0.271702.488801.46980K562HNRNPA1
POLDIP2ENSG00000004142.71281.479301959.97410-0.613008.953207.93040K562HNRNPC
POLDIP2ENSG00000004142.72875.944001913.984200.587405.829804.41170K562HNRNPM
POLDIP2ENSG00000004142.73979.499603154.526700.335103.119002.27630K562HSPD1
POLDIP2ENSG00000004142.72083.771202717.83680-0.383303.144001.47350K562PKM
POLDIP2ENSG00000004142.73372.230402641.604000.352203.333502.41880K562PPIG
POLDIP2ENSG00000004142.72177.627201562.853200.478506.414905.43870K562PTBP1
POLDIP2ENSG00000004142.73535.277104211.50700-0.252502.961101.97050K562PUM2
POLDIP2ENSG00000004142.72838.541701833.160500.630706.620705.34830K562RPS19
POLDIP2ENSG00000004142.71777.969301093.659400.701003.310102.20690K562RPS3
POLDIP2ENSG00000004142.7986.752601430.96970-0.536204.448103.20070K562SF3B1
POLDIP2ENSG00000004142.71126.021101542.48880-0.454004.211802.62970K562SLBP
POLDIP2ENSG00000004142.71885.604601532.185600.299302.678001.98110K562SRSF1
POLDIP2ENSG00000004142.72142.099402662.14860-0.313603.381101.69510K562SRSF9
POLDIP2ENSG00000004142.72355.933103052.77840-0.373803.451601.90650K562SSRP1
POLDIP2ENSG00000004142.72145.656802792.04290-0.379903.012901.70120K562STAU1
POLDIP2ENSG00000004142.73076.005702345.727800.390905.288004.14420K562SYNCRIP
POLDIP2ENSG00000004142.7874.359801103.41850-0.335702.995102.15950K562U2AF2
POLDIP2ENSG00000004142.71395.627701844.18560-0.402103.538802.37790K562UCHL5
POLDIP2ENSG00000004142.72598.141202256.998000.203002.685101.85080K562WDR43
POLDIP2ENSG00000004142.72624.989003458.90700-0.398002.222801.46050K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POLDIP2 is not available on ENCORE database.





4 RBPs can affect the splicing of POLDIP2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
A3SSPOLDIP2ENSG00000004142.7chr17-2667779126677940266777912667781826678689266788260.060000.000000.00001longerK562U2AF2
A3SSPOLDIP2ENSG00000004142.7chr17-2667779126677940266777912667781826678689266788260.072000.000000.00000longerK562SF3B4
A3SSPOLDIP2ENSG00000004142.7chr17-2668282026682937266828202668290226684313266843930.142000.000000.00001longerK562AQR
MXEPOLDIP2ENSG00000004142.7chr17-2667610826676188266774632667758926674202266752572667779126677818-0.113000.001620.062342includedK562SAFB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for POLDIP2 is not avaliable on ENCORE database.