PTPRK

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTPRK	ENSG00000152894.14	0.95	0.37	0.66	ENCSR000AEF
HepG2	PTPRK	ENSG00000152894.14	46.90	53.11	50.00	ENCSR985KAT
K562	PTPRK	ENSG00000152894.14	0.00	0.01	0.01	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTPRK is not avaliable on ENCORE database.

Proteins bound to RNA

PTPRK RNA is bound by 40 proteins.

eCLIP assay for PTPRK is not avaliable on ENCORE database.

40 proteins are bound to PTPRK RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	128327101	128327244	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.36900	8.33739	HepG2	QKI
chr6	128403627	128403655	-	3'-UTR,CDS,intron-Distal	3.15097	6.24085	HepG2	IGF2BP1
chr6	128290659	128290741	-	3'-UTR,intron-Distal	4.62733	5.66020	HepG2	TIAL1
chr6	128404859	128404914	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.46064	16.44038	HepG2	BCLAF1
chr6	128643138	128643202	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.44632	4.54206	HepG2	PRPF8
chr6	128505823	128505870	-	3'-UTR,CDS,intron-Distal	3.09150	6.04751	HepG2	GRWD1
chr6	128403718	128403784	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.39838	7.45301	HepG2	ZNF800
chr6	128505689	128505746	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20665	7.47194	HepG2	GRWD1
chr6	128718709	128718768	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.00016	7.83887	HepG2	GRWD1
chr6	128388826	128388861	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.94624	12.44336	HepG2	BCLAF1
chr6	128411101	128411136	-	3'-UTR,CDS,intron-Distal	3.01316	6.70604	HepG2	BCLAF1
chr6	128643343	128643455	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.92181	11.63187	HepG2	GRWD1
chr6	128643184	128643260	-	3'-UTR,CDS,intron-Distal	3.28773	17.95683	HepG2	BCLAF1
chr6	128505583	128505685	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.95129	16.07681	HepG2	GRWD1
chr6	128718778	128718826	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.79588	3.07278	HepG2	UCHL5
chr6	128327163	128327242	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.66553	9.61270	HepG2	RBFOX2
chr6	128505575	128505671	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.58887	18.24545	HepG2	BCLAF1
chr6	128403721	128403760	-	3'-UTR,CDS,intron-Distal	3.56898	13.09340	HepG2	BCLAF1
chr6	128403715	128403766	-	3'-UTR,CDS,intron-Distal	4.95704	8.84267	HepG2	GRWD1
chr6	128290361	128290436	-	3'-UTR,intron-Distal	4.26276	8.85527	HepG2	DDX55
chr6	128404930	128404970	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.16092	3.27746	HepG2	LIN28B
chr6	128643025	128643110	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.20977	6.62875	HepG2	KHSRP
chr6	128290563	128290629	-	3'-UTR,intron-Distal	3.42426	10.57310	HepG2	FUBP3
chr6	128290500	128290609	-	3'-UTR,intron-Distal	3.16523	9.25779	HepG2	DDX55
chr6	128403655	128403686	-	3'-UTR,CDS,intron-Distal	3.56924	3.77798	HepG2	IGF2BP1
chr6	128718768	128718832	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32298	9.21044	HepG2	PPIG
chr6	128290483	128290563	-	3'-UTR,intron-Distal	3.75960	11.44928	HepG2	FUBP3
chr6	128290649	128290720	-	3'-UTR,intron-Distal	3.78411	6.71479	HepG2	FUBP3
chr6	128505749	128505823	-	3'-UTR,CDS,intron-Distal	3.17468	8.62348	HepG2	GRWD1
chr6	128505705	128505758	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.59815	5.78061	HepG2	LIN28B
chr6	128388868	128388935	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.35739	10.49889	HepG2	BCLAF1
chr6	128290542	128290624	-	3'-UTR,intron-Distal	3.96226	7.03927	HepG2	TIAL1
chr6	128505583	128505659	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.06033	6.49263	HepG2	PPIG
chr6	128403720	128403764	-	3'-UTR,CDS,intron-Distal	3.28976	3.50639	HepG2	PPIG
chr6	128327153	128327295	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.65037	9.77037	HepG2	DROSHA
chr6	128290381	128290437	-	3'-UTR,intron-Distal	3.45332	5.35418	HepG2	FUBP3
chr6	128290268	128290323	-	3'-UTR,intron-Distal	4.76527	6.09743	HepG2	LARP4
chr6	128311996	128312029	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.08349	7.10293	HepG2	BCLAF1
chr6	128643260	128643314	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.21987	8.50526	HepG2	BCLAF1
chr6	128403775	128403781	-	3'-UTR,CDS,intron-Distal	3.64987	4.74886	HepG2	BCLAF1
chr6	128388662	128388705	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.91754	8.86021	HepG2	GRWD1
chr6	128290654	128290693	-	3'-UTR,intron-Distal	4.69469	7.49292	HepG2	TIA1
chr6	128563698	128563746	-	5'-UTR,CDS,intron-Distal	4.63194	22.44355	HepG2	BCLAF1
chr6	128563663	128563698	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.84507	18.99913	HepG2	BCLAF1
chr6	128841524	128841626	-	5'-UTR,intron-Distal,intron-Proximal	3.53740	34.17904	HepG2	DDX3X
chr6	128561140	128561200	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.42805	10.86331	HepG2	PRPF8
chr6	128540190	128540241	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.81766	13.26331	HepG2	BCLAF1
chr6	128540067	128540232	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.28879	13.10144	HepG2	GRWD1
chr6	128561178	128561186	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.55517	8.16183	HepG2	BCLAF1
chr6	128540138	128540190	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.20017	13.23699	HepG2	BCLAF1
chr6	128561218	128561312	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.22300	24.81936	HepG2	U2AF2
chr6	128841626	128841670	-	5'-UTR,intron-Distal,intron-Proximal	3.24532	10.34640	HepG2	DDX3X
chr6	128841471	128841519	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.68772	10.20469	HepG2	DDX3X
chr6	128540112	128540138	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.29071	13.35189	HepG2	BCLAF1
chr6	128540082	128540112	-	5'-UTR,CDS,intron-Distal	3.05410	13.36739	HepG2	BCLAF1
chr6	128561237	128561295	-	5'-UTR,CDS,intron-Distal	3.11184	17.70814	HepG2	BCLAF1
chr6	128841670	128841723	-	5'-UTR,intron-Distal,intron-Proximal	3.96449	32.49026	HepG2	DDX3X
chr6	128540145	128540210	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.50135	7.44928	HepG2	PPIG
chr6	128306880	128306917	-	CDS,intron-Distal,intron-Proximal	3.39449	4.70315	HepG2	YBX3
chr6	128298065	128298083	-	CDS,intron-Distal,intron-Proximal	4.49359	6.88279	HepG2	LIN28B
chr6	128302221	128302298	-	CDS,intron-Distal,intron-Proximal	4.55732	8.44604	HepG2	PRPF8
chr6	128297809	128297856	-	CDS,intron-Distal	4.61810	4.13543	HepG2	FXR2
chr6	128294808	128294876	-	CDS,intron-Distal,intron-Proximal	4.83522	4.96722	HepG2	G3BP1
chr6	128298083	128298127	-	CDS,intron-Distal	5.87782	10.86367	HepG2	LIN28B
chr6	128302260	128302310	-	CDS,intron-Distal,intron-Proximal	3.15470	6.49673	HepG2	YBX3
chr6	128297872	128297924	-	CDS,intron-Distal	3.36028	5.79393	HepG2	LIN28B
chr6	128298138	128298199	-	CDS,intron-Distal	3.32054	4.88121	HepG2	YBX3
chr6	128294928	128294973	-	CDS,intron-Distal,intron-Proximal	3.94192	3.11282	HepG2	G3BP1
chr6	128319964	128320001	-	CDS,intron-Distal	3.17593	3.79741	HepG2	GRWD1
chr6	128294837	128294930	-	CDS,intron-Distal	4.98668	13.80799	HepG2	LIN28B
chr6	128297801	128297832	-	CDS,intron-Distal,intron-Proximal	3.92792	3.35081	HepG2	G3BP1
chr6	128306864	128306880	-	CDS,intron-Distal,intron-Proximal	3.13579	3.29335	HepG2	YBX3
chr6	128297924	128297927	-	CDS,intron-Distal	4.22143	5.47334	HepG2	LIN28B
chr6	128771809	128771905	-	intron-Distal	4.24598	8.51210	HepG2	KHSRP
chr6	128708475	128708575	-	intron-Distal	4.69158	4.85866	HepG2	QKI
chr6	128671429	128671551	-	intron-Distal	3.18227	3.35377	HepG2	QKI
chr6	128330879	128330974	-	intron-Distal	5.32781	9.01569	HepG2	CSTF2
chr6	128692355	128692417	-	intron-Distal	5.17639	8.32953	HepG2	QKI
chr6	128764492	128764582	-	intron-Distal	3.65656	8.67297	HepG2	U2AF2
chr6	128504092	128504150	-	intron-Distal	4.03891	3.48210	HepG2	HNRNPL
chr6	128565863	128565930	-	intron-Distal	4.40376	5.31529	HepG2	SUGP2
chr6	128771366	128771436	-	intron-Distal	4.02371	4.06464	HepG2	CSTF2
chr6	128829846	128829927	-	intron-Distal	3.27392	6.55140	HepG2	HNRNPC
chr6	128792518	128792577	-	intron-Distal	3.72953	4.28254	HepG2	MATR3
chr6	128841219	128841295	-	intron-Distal	3.34478	4.69648	HepG2	PCBP2
chr6	128619175	128619233	-	intron-Distal	3.98483	6.71533	HepG2	MATR3
chr6	128618504	128618555	-	intron-Distal	4.43970	3.96879	HepG2	MATR3
chr6	128466470	128466564	-	intron-Distal	4.62422	12.89472	HepG2	HNRNPL
chr6	128473579	128473646	-	intron-Distal	4.61479	8.71608	HepG2	MATR3
chr6	128591587	128591658	-	intron-Distal	3.26588	4.03817	HepG2	KHSRP
chr6	128385811	128385885	-	intron-Distal,intron-Proximal	5.44135	12.26030	HepG2	TIAL1
chr6	128589858	128589917	-	intron-Distal	4.08249	4.02395	HepG2	KHSRP
chr6	128476116	128476229	-	intron-Distal	4.53234	22.21108	HepG2	QKI
chr6	128355881	128356002	-	intron-Distal	4.73507	10.95384	HepG2	HNRNPL
chr6	128753150	128753181	-	intron-Distal	4.19192	5.36899	HepG2	PTBP1
chr6	128581624	128581733	-	intron-Distal	4.42741	4.86548	HepG2	SUGP2
chr6	128615423	128615653	-	intron-Distal	5.03378	6.13315	HepG2	BCLAF1
chr6	128812159	128812226	-	intron-Distal	3.60872	7.44261	HepG2	KHSRP
chr6	128764429	128764484	-	intron-Distal	3.40089	9.49508	HepG2	PTBP1
chr6	128617269	128617358	-	intron-Distal	3.20316	3.31508	HepG2	HNRNPM
chr6	128614651	128614728	-	intron-Distal	3.80118	3.77017	HepG2	CSTF2
chr6	128840724	128840803	-	intron-Distal	4.43566	5.60379	HepG2	FUS
chr6	128504150	128504216	-	intron-Distal	3.54822	4.51074	HepG2	HNRNPL
chr6	128460110	128460272	-	intron-Distal	3.23700	3.89889	HepG2	HNRNPL
chr6	128806296	128806355	-	intron-Distal	3.11352	4.88847	HepG2	QKI
chr6	128628153	128628228	-	intron-Distal	3.19158	10.35881	HepG2	QKI
chr6	128460123	128460270	-	intron-Distal	3.26426	7.05707	HepG2	PTBP1
chr6	128751919	128751976	-	intron-Distal	3.81389	6.89032	HepG2	CSTF2
chr6	128530897	128531032	-	intron-Distal	3.22423	5.88747	HepG2	HNRNPL
chr6	128508325	128508402	-	intron-Distal	4.37578	4.07628	HepG2	PTBP1
chr6	128807881	128807989	-	intron-Distal	4.46012	54.03789	HepG2	PTBP1
chr6	128685104	128685199	-	intron-Distal	4.78191	12.54308	HepG2	QKI
chr6	128473498	128473656	-	intron-Distal	4.08218	16.72598	HepG2	SUGP2
chr6	128355850	128355906	-	intron-Distal	5.73856	11.86079	HepG2	QKI
chr6	128589210	128589270	-	intron-Distal	3.08089	5.79202	HepG2	U2AF2
chr6	128780180	128780234	-	intron-Distal	3.58958	7.96049	HepG2	U2AF2
chr6	128587675	128587831	-	intron-Distal	3.37841	3.90822	HepG2	HNRNPM
chr6	128762813	128762894	-	intron-Distal	4.23476	7.08005	HepG2	QKI
chr6	128490766	128490824	-	intron-Distal	4.39712	5.34107	HepG2	KHSRP
chr6	128640908	128640999	-	intron-Distal	3.34275	4.26114	HepG2	HNRNPL
chr6	128477780	128477855	-	intron-Distal	4.69367	7.42379	HepG2	CSTF2
chr6	128801928	128801989	-	intron-Distal	4.08786	9.67936	HepG2	HNRNPM
chr6	128691386	128691488	-	intron-Distal	4.69042	8.08894	HepG2	QKI
chr6	128497475	128497519	-	intron-Distal	3.99547	3.19026	HepG2	HNRNPL
chr6	128442459	128442570	-	intron-Distal	3.23277	5.61197	HepG2	HNRNPL
chr6	128841228	128841305	-	intron-Distal	3.13717	6.42769	HepG2	XRN2
chr6	128309298	128309373	-	intron-Distal	3.92974	5.38800	HepG2	PCBP2
chr6	128327327	128327397	-	intron-Distal	4.64994	3.80778	HepG2	QKI
chr6	128617242	128617399	-	intron-Distal	4.51196	9.77279	HepG2	EXOSC5
chr6	128787649	128787703	-	intron-Distal	4.11698	7.43408	HepG2	KHSRP
chr6	128839993	128840074	-	intron-Distal,intron-Proximal	4.03174	14.78497	HepG2	CSTF2
chr6	128313988	128314025	-	intron-Distal	3.90886	3.95921	HepG2	U2AF2
chr6	128840312	128840424	-	intron-Distal	3.48084	8.10750	HepG2	CSTF2
chr6	128777673	128777767	-	intron-Distal	3.36829	4.50064	HepG2	SFPQ
chr6	128756100	128756217	-	intron-Distal	5.11338	32.11922	HepG2	PTBP1
chr6	128617325	128617517	-	intron-Distal	4.44033	17.81676	HepG2	MATR3
chr6	128811933	128812051	-	intron-Distal	4.41901	4.28240	HepG2	TRA2A
chr6	128521900	128521974	-	intron-Distal	3.97210	3.41738	HepG2	PTBP1
chr6	128565487	128565564	-	intron-Distal	4.80261	4.31720	HepG2	MATR3
chr6	128619276	128619343	-	intron-Distal	4.22421	4.05620	HepG2	MATR3
chr6	128474216	128474260	-	intron-Distal	3.68693	5.56133	HepG2	SUGP2
chr6	128613935	128613999	-	intron-Distal	4.01538	4.08455	HepG2	CSTF2
chr6	128473991	128474029	-	intron-Distal	4.63850	5.11328	HepG2	SUGP2
chr6	128674084	128674191	-	intron-Distal	4.59077	7.03205	HepG2	CSTF2
chr6	128473206	128473267	-	intron-Distal	3.44365	5.58751	HepG2	MATR3
chr6	128785541	128785641	-	intron-Distal	4.36572	21.15838	HepG2	U2AF2
chr6	128576916	128576992	-	intron-Distal	4.40376	4.86548	HepG2	SUGP2
chr6	128841070	128841167	-	intron-Distal	3.89229	5.47244	HepG2	LARP4
chr6	128779728	128779800	-	intron-Distal	3.12607	3.65621	HepG2	HNRNPL
chr6	128499929	128499991	-	intron-Distal	3.69848	3.35377	HepG2	QKI
chr6	128792623	128792656	-	intron-Distal	3.64735	4.19039	HepG2	PTBP1
chr6	128415981	128416085	-	intron-Distal	4.70036	14.97374	HepG2	PTBP1
chr6	128797312	128797414	-	intron-Distal	3.73518	3.59547	HepG2	CSTF2
chr6	128501176	128501356	-	intron-Distal	4.53080	3.40087	HepG2	RBFOX2
chr6	128530875	128530971	-	intron-Distal	3.13161	3.81193	HepG2	QKI
chr6	128753097	128753117	-	intron-Distal	4.35644	10.98899	HepG2	PTBP1
chr6	128524743	128524799	-	intron-Distal	3.83263	4.87260	HepG2	HNRNPM
chr6	128782624	128782684	-	intron-Distal	3.15522	3.91140	HepG2	CSTF2
chr6	128840990	128841051	-	intron-Distal	3.39162	4.23685	HepG2	CDC40
chr6	128821075	128821128	-	intron-Distal	4.44608	6.74598	HepG2	QKI
chr6	128625907	128625999	-	intron-Distal	3.68979	10.23026	HepG2	U2AF2
chr6	128316259	128316331	-	intron-Distal,intron-Proximal	4.73748	5.89032	HepG2	QKI
chr6	128765737	128765860	-	intron-Distal	4.23458	10.00695	HepG2	PTBP1
chr6	128315550	128315669	-	intron-Distal	6.66012	28.01205	HepG2	QKI
chr6	128797564	128797652	-	intron-Distal	3.29201	4.43403	HepG2	CSTF2
chr6	128330809	128330880	-	intron-Distal	4.50232	4.51735	HepG2	QKI
chr6	128574711	128574830	-	intron-Distal	3.21697	3.11000	HepG2	HNRNPM
chr6	128811731	128811875	-	intron-Distal	3.09557	4.05487	HepG2	CSTF2
chr6	128323637	128323731	-	intron-Distal	3.69733	4.23286	HepG2	QKI
chr6	128462223	128462295	-	intron-Distal	3.55506	4.97118	HepG2	U2AF2
chr6	128497053	128497124	-	intron-Distal	3.32550	9.70102	HepG2	RBFOX2
chr6	128790764	128790849	-	intron-Distal	3.41670	4.45128	HepG2	HNRNPL
chr6	128521901	128522048	-	intron-Distal	6.87762	27.73038	HepG2	PCBP2
chr6	128640147	128640216	-	intron-Distal	3.38154	3.35377	HepG2	QKI
chr6	128783314	128783357	-	intron-Distal	3.23911	6.84137	HepG2	QKI
chr6	128669195	128669317	-	intron-Distal	4.81565	6.41805	HepG2	KHSRP
chr6	128523737	128523849	-	intron-Distal	3.81427	4.57452	HepG2	SUGP2
chr6	128840672	128840802	-	intron-Distal	4.01363	10.42742	HepG2	CSTF2
chr6	128565071	128565136	-	intron-Distal	3.51584	4.19039	HepG2	PTBP1
chr6	128495195	128495298	-	intron-Distal	3.21124	5.61197	HepG2	HNRNPL
chr6	128491601	128491696	-	intron-Distal	4.96971	7.27881	HepG2	KHSRP
chr6	128840980	128841071	-	intron-Distal	3.50821	3.69143	HepG2	CSTF2
chr6	128619170	128619218	-	intron-Distal	4.44471	8.45083	HepG2	HNRNPM
chr6	128587666	128587749	-	intron-Distal	3.40745	4.35402	HepG2	SUGP2
chr6	128354322	128354380	-	intron-Distal	4.37529	5.61812	HepG2	CSTF2
chr6	128800760	128800863	-	intron-Distal	3.24426	3.30286	HepG2	PTBP1
chr6	128473342	128473441	-	intron-Distal	3.37523	8.98661	HepG2	SUGP2
chr6	128447933	128448049	-	intron-Distal	3.67121	5.81300	HepG2	HNRNPL
chr6	128771665	128771837	-	intron-Distal	4.29354	4.12078	HepG2	FUS
chr6	128472915	128472947	-	intron-Distal	3.05886	4.88763	HepG2	SUGP2
chr6	128689284	128689412	-	intron-Distal	3.59607	3.59803	HepG2	PTBP1
chr6	128361723	128361839	-	intron-Distal	4.24396	6.08171	HepG2	QKI
chr6	128806657	128806722	-	intron-Distal	3.72765	4.95619	HepG2	SFPQ
chr6	128840167	128840254	-	intron-Distal	3.06229	4.27513	HepG2	CSTF2
chr6	128641880	128641947	-	intron-Distal	3.35453	6.16966	HepG2	KHSRP
chr6	128797383	128797540	-	intron-Distal	5.63007	14.97829	HepG2	QKI
chr6	128598091	128598149	-	intron-Distal	3.53508	5.00859	HepG2	RBFOX2
chr6	128565229	128565270	-	intron-Distal	3.88502	3.63454	HepG2	SUGP2
chr6	128472816	128472862	-	intron-Distal	3.84802	6.48659	HepG2	SUGP2
chr6	128832453	128832528	-	intron-Distal	3.56174	5.21690	HepG2	HNRNPM
chr6	128615046	128615107	-	intron-Distal	3.40120	3.56114	HepG2	KHSRP
chr6	128716968	128717064	-	intron-Distal	3.14658	5.14345	HepG2	KHSRP
chr6	128820561	128820638	-	intron-Distal	3.28075	4.50064	HepG2	SFPQ
chr6	128503928	128503983	-	intron-Distal	3.40120	3.53952	HepG2	KHSRP
chr6	128782318	128782359	-	intron-Distal	4.07544	3.98095	HepG2	HNRNPL
chr6	128503808	128503877	-	intron-Distal	3.47462	3.53952	HepG2	KHSRP
chr6	128725777	128725920	-	intron-Distal	3.46374	3.06005	HepG2	QKI
chr6	128491794	128491853	-	intron-Distal	3.50267	5.97243	HepG2	U2AF2
chr6	128513926	128513988	-	intron-Distal	4.64922	10.39610	HepG2	PCBP2
chr6	128787606	128787649	-	intron-Distal	3.62746	5.34065	HepG2	KHSRP
chr6	128551990	128552037	-	intron-Distal,intron-Proximal	3.24342	4.18806	HepG2	U2AF2
chr6	128839886	128839953	-	intron-Distal	4.04608	8.04909	HepG2	CSTF2
chr6	128594610	128594790	-	intron-Distal	3.45519	6.01218	HepG2	HNRNPM
chr6	128838342	128838432	-	intron-Distal	3.85066	6.36119	HepG2	KHSRP
chr6	128744168	128744237	-	intron-Distal	5.37976	17.90841	HepG2	QKI
chr6	128806355	128806410	-	intron-Distal	4.16088	3.83958	HepG2	QKI
chr6	128569543	128569587	-	intron-Distal	3.23932	3.46325	HepG2	SUGP2
chr6	128537015	128537153	-	intron-Distal	4.36628	14.77936	HepG2	QKI
chr6	128573833	128573926	-	intron-Distal	4.44909	9.06892	HepG2	HNRNPM
chr6	128513909	128514048	-	intron-Distal	5.28309	5.92007	HepG2	DDX59
chr6	128751976	128752037	-	intron-Distal	5.49128	12.79807	HepG2	CSTF2
chr6	128570232	128570310	-	intron-Distal	3.00663	3.27745	HepG2	SUGP2
chr6	128840714	128840811	-	intron-Distal	3.07267	4.23490	HepG2	NKRF
chr6	128521920	128522040	-	intron-Distal	3.58603	5.50031	HepG2	DDX59
chr6	128810306	128810353	-	intron-Distal	4.75513	6.83266	HepG2	CSTF2
chr6	128491789	128491844	-	intron-Distal	4.33597	4.00239	HepG2	KHSRP
chr6	128355813	128355850	-	intron-Distal	5.13571	6.58335	HepG2	QKI
chr6	128505492	128505554	-	intron-Distal,intron-Proximal	5.16428	9.23463	HepG2	TIAL1
chr6	128513994	128514099	-	intron-Distal	6.18732	33.52505	HepG2	PCBP2
chr6	128670022	128670103	-	intron-Distal	4.79480	4.51735	HepG2	QKI
chr6	128473817	128473879	-	intron-Distal	3.15205	3.30286	HepG2	PTBP1
chr6	128764425	128764489	-	intron-Distal	3.34073	4.26182	HepG2	MATR3
chr6	128617429	128617511	-	intron-Distal	5.43667	5.90029	HepG2	EXOSC5
chr6	128390037	128390126	-	intron-Distal	4.73141	7.70131	HepG2	PCBP2
chr6	128812786	128812838	-	intron-Distal,intron-Proximal	3.39165	4.06432	HepG2	KHSRP
chr6	128614145	128614355	-	intron-Distal	5.52247	11.77081	HepG2	CSTF2
chr6	128642128	128642157	-	intron-Distal,intron-Proximal	4.25931	4.29306	HepG2	KHSRP
chr6	128789537	128789630	-	intron-Distal	4.54349	5.60990	HepG2	KHSRP
chr6	128322110	128322208	-	intron-Distal	4.12099	7.97263	HepG2	KHSRP
chr6	128362808	128362879	-	intron-Distal	3.99878	3.04956	HepG2	HNRNPL
chr6	128565090	128565125	-	intron-Distal	3.86896	3.24322	HepG2	MATR3
chr6	128812487	128812531	-	intron-Distal	4.17126	9.60589	HepG2	QKI
chr6	128841078	128841165	-	intron-Distal	3.05524	6.82163	HepG2	CSTF2
chr6	128508299	128508379	-	intron-Distal	5.16434	7.71913	HepG2	U2AF2
chr6	128793067	128793138	-	intron-Distal	4.91509	21.87186	HepG2	PTBP1
chr6	128471966	128472056	-	intron-Distal	4.45255	4.85866	HepG2	QKI
chr6	128327342	128327414	-	intron-Distal	3.17483	3.00103	HepG2	DROSHA
chr6	128401693	128401793	-	intron-Distal	5.56911	10.00393	HepG2	HNRNPL
chr6	128753117	128753150	-	intron-Distal	5.52506	17.71142	HepG2	PTBP1
chr6	128415918	128415981	-	intron-Distal	5.04392	12.58145	HepG2	PTBP1
chr6	128793138	128793208	-	intron-Distal	3.83077	14.88562	HepG2	PTBP1
chr6	128806650	128806716	-	intron-Distal	3.20115	3.10883	HepG2	SUGP2
chr6	128740707	128740760	-	intron-Distal	3.70480	6.24326	HepG2	HNRNPC
chr6	128408663	128408774	-	intron-Distal	3.58136	3.76460	HepG2	HNRNPL
chr6	128692120	128692175	-	intron-Distal	4.04958	3.27582	HepG2	SFPQ
chr6	128322218	128322275	-	intron-Distal,intron-Proximal	3.14314	4.89628	HepG2	KHSRP
chr6	128495363	128495415	-	intron-Distal	3.79620	6.25849	HepG2	HNRNPL
chr6	128764428	128764498	-	intron-Distal	3.65660	13.96517	HepG2	PCBP2
chr6	128764484	128764595	-	intron-Distal	4.21386	31.02260	HepG2	PTBP1
chr6	128630415	128630546	-	intron-Distal	3.84959	3.06084	HepG2	HNRNPK
chr6	128841002	128841055	-	intron-Distal	3.33884	4.11679	HepG2	SFPQ
chr6	128764405	128764492	-	intron-Distal	3.17750	9.04979	HepG2	U2AF2
chr6	128840003	128840068	-	intron-Distal,intron-Proximal	3.09074	5.19703	HepG2	CSTF2T
chr6	128771619	128771708	-	intron-Distal	4.57293	5.91714	HepG2	KHSRP
chr6	128787703	128787756	-	intron-Distal	3.39576	4.64228	HepG2	KHSRP
chr6	128513957	128514074	-	intron-Distal	3.82880	6.29348	HepG2	HNRNPK
chr6	128520676	128520764	-	intron-Distal	5.37786	7.79030	HepG2	PCBP2
chr6	128360619	128360708	-	intron-Distal	4.35623	4.17759	HepG2	QKI
chr6	128617407	128617500	-	intron-Distal	3.37022	6.82194	HepG2	HNRNPM
chr6	128840817	128840907	-	intron-Distal	3.92319	14.07239	HepG2	HNRNPK
chr6	128570250	128570322	-	intron-Distal	3.14262	4.30137	HepG2	PTBP1
chr6	128780074	128780119	-	intron-Distal	4.05672	3.20552	HepG2	KHSRP
chr6	128472894	128472990	-	intron-Distal	3.55485	6.81529	HepG2	MATR3
chr6	128777675	128777773	-	intron-Distal	3.73911	3.39362	HepG2	CSTF2
chr6	128837300	128837367	-	intron-Distal	5.26947	7.72290	HepG2	HNRNPK
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for PTPRK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTPRK is not available on ENCORE database.
100 RBPs can affect the levels of PTPRK.

The Knockdown/knockout RNA-Seq assay for PTPRK is not available on ENCORE database.

100 RBPs can affect the gene expression of PTPRK :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTPRK	ENSG00000152894.10	3429.69960	4229.72630	-0.30250	6.09340	5.26200	HepG2	ACO1
PTPRK	ENSG00000152894.10	4567.74270	6621.58250	-0.53570	5.15780	4.46000	HepG2	AKAP1
PTPRK	ENSG00000152894.10	4939.00190	6514.52480	-0.39940	3.24490	2.12230	HepG2	AKAP8
PTPRK	ENSG00000152894.10	3660.43650	4249.54530	-0.21530	2.89420	2.11060	HepG2	AKAP8L
PTPRK	ENSG00000152894.10	4138.62110	5478.76560	-0.40470	3.74560	2.83610	HepG2	ASCC1
PTPRK	ENSG00000152894.10	5064.92190	5696.02460	-0.16940	2.08180	1.47060	HepG2	AUH
PTPRK	ENSG00000152894.10	2032.51690	3353.00090	-0.72220	8.34040	6.66910	HepG2	BCCIP
PTPRK	ENSG00000152894.10	3599.00170	4631.61080	-0.36390	3.78970	3.10100	HepG2	BOP1
PTPRK	ENSG00000152894.10	4157.37440	6689.77450	-0.68630	6.99250	5.43330	HepG2	CCAR1
PTPRK	ENSG00000152894.10	2924.59260	5366.38200	-0.87570	7.88440	6.60330	HepG2	CNOT7
PTPRK	ENSG00000152894.10	4156.07230	4732.04200	-0.18720	1.94300	1.38580	HepG2	CELF1
PTPRK	ENSG00000152894.10	2363.42330	4048.31410	-0.77640	12.84190	11.51210	HepG2	DDX21
PTPRK	ENSG00000152894.10	4770.32020	3960.09380	0.26850	2.67880	1.78140	HepG2	DDX24
PTPRK	ENSG00000152894.10	4359.51550	6342.89350	-0.54100	6.08540	5.19260	HepG2	DDX3X
PTPRK	ENSG00000152894.10	1872.66550	3296.71290	-0.81590	10.58510	9.18920	HepG2	DDX55
PTPRK	ENSG00000152894.10	2654.89930	3687.34470	-0.47390	14.87970	13.48830	HepG2	DNAJC2
PTPRK	ENSG00000152894.10	2596.60460	3448.44300	-0.40930	3.87250	2.55480	HepG2	EFTUD2
PTPRK	ENSG00000152894.10	3295.07830	4283.50390	-0.37850	4.83890	3.31690	HepG2	EIF2S2
PTPRK	ENSG00000152894.10	3920.25300	5788.44620	-0.56220	5.57810	4.67130	HepG2	EIF4A3
PTPRK	ENSG00000152894.10	7092.62440	5636.04090	0.33150	1.88570	1.31030	HepG2	EIF4B
PTPRK	ENSG00000152894.10	6073.14160	5019.67170	0.27470	5.10700	4.02640	HepG2	EIF4G1
PTPRK	ENSG00000152894.10	5451.38360	6539.77480	-0.26260	4.64720	3.90500	HepG2	ETF1
PTPRK	ENSG00000152894.10	3036.05630	4133.14130	-0.44500	6.11260	4.86890	HepG2	EWSR1
PTPRK	ENSG00000152894.10	4287.15840	5701.65600	-0.41140	3.54950	2.68460	HepG2	FIP1L1
PTPRK	ENSG00000152894.10	4497.12560	3727.16140	0.27080	2.49700	1.74910	HepG2	FUBP3
PTPRK	ENSG00000152894.10	3756.50270	5028.30500	-0.42070	2.61420	1.52890	HepG2	FUS
PTPRK	ENSG00000152894.10	4450.42990	5840.57890	-0.39220	3.61470	2.83080	HepG2	FXR1
PTPRK	ENSG00000152894.10	3766.82900	5417.84640	-0.52440	5.30650	4.39740	HepG2	G3BP1
PTPRK	ENSG00000152894.10	2330.79760	2989.82530	-0.35920	3.32820	2.33570	HepG2	GEMIN5
PTPRK	ENSG00000152894.10	2865.84550	3868.59020	-0.43280	3.87320	2.66520	HepG2	GNB2L1
PTPRK	ENSG00000152894.10	2122.28450	3755.72340	-0.82350	17.40240	16.00940	HepG2	HNRNPA1
PTPRK	ENSG00000152894.10	3712.50490	4675.91320	-0.33290	5.77480	4.50490	HepG2	HNRNPA2B1
PTPRK	ENSG00000152894.10	3908.76850	4634.31180	-0.24560	3.33480	2.60040	HepG2	HNRNPL
PTPRK	ENSG00000152894.10	3229.31390	3934.00570	-0.28480	2.83100	1.86960	HepG2	HNRNPM
PTPRK	ENSG00000152894.10	2231.49810	4149.96260	-0.89510	39.80690	37.73460	HepG2	HNRNPU
PTPRK	ENSG00000152894.10	1988.31840	4239.04300	-1.09220	76.47160	73.65140	HepG2	ILF2
PTPRK	ENSG00000152894.10	3874.16540	5231.52870	-0.43330	2.64260	1.36090	HepG2	ILF3
PTPRK	ENSG00000152894.10	3801.74230	5112.85070	-0.42750	3.13610	1.84920	HepG2	KHDRBS1
PTPRK	ENSG00000152894.10	4240.06160	5539.26930	-0.38560	2.51570	1.56980	HepG2	KHSRP
PTPRK	ENSG00000152894.10	3712.61760	7064.40430	-0.92810	12.48260	10.73280	HepG2	LARP4
PTPRK	ENSG00000152894.10	2928.07730	3789.77320	-0.37220	3.78290	2.45550	HepG2	LARP7
PTPRK	ENSG00000152894.10	4222.71330	5842.61920	-0.46840	4.66140	3.81610	HepG2	MAGOH
PTPRK	ENSG00000152894.10	4345.52820	5875.27420	-0.43510	3.74750	3.02290	HepG2	MATR3
PTPRK	ENSG00000152894.10	2729.41190	4614.71870	-0.75770	16.35940	14.58180	HepG2	MSI2
PTPRK	ENSG00000152894.10	2944.92930	6013.63290	-1.03000	18.77660	17.21960	HepG2	NCBP2
PTPRK	ENSG00000152894.10	4192.10870	6722.44990	-0.68130	6.15670	4.02870	HepG2	NKRF
PTPRK	ENSG00000152894.10	3102.50490	5044.92050	-0.70140	17.83180	16.00640	HepG2	NOL12
PTPRK	ENSG00000152894.10	5487.50660	4078.69380	0.42790	4.85350	3.87370	HepG2	NSUN2
PTPRK	ENSG00000152894.10	2883.90530	3850.43380	-0.41700	3.58530	1.30950	HepG2	NUSAP1
PTPRK	ENSG00000152894.10	3617.67250	4904.70030	-0.43910	2.14460	1.37930	HepG2	PABPC1
PTPRK	ENSG00000152894.10	3550.31210	4107.70610	-0.21040	2.74080	1.89670	HepG2	PARN
PTPRK	ENSG00000152894.10	3125.00680	4760.17120	-0.60720	4.55610	3.24800	HepG2	PCBP2
PTPRK	ENSG00000152894.10	2124.18350	2776.92660	-0.38660	5.14100	3.48420	HepG2	PKM
PTPRK	ENSG00000152894.10	4774.63130	4188.44440	0.18890	2.24660	1.54260	HepG2	PRPF4
PTPRK	ENSG00000152894.10	3588.42130	5004.25640	-0.47980	2.97370	1.71530	HepG2	PRPF6
PTPRK	ENSG00000152894.10	2706.71940	4325.15550	-0.67620	3.74720	1.68200	HepG2	PSIP1
PTPRK	ENSG00000152894.10	4360.33310	5464.07590	-0.32550	6.70340	5.92550	HepG2	PTBP1
PTPRK	ENSG00000152894.10	5956.22990	5112.49080	0.22030	5.06550	4.31210	HepG2	PUM1
PTPRK	ENSG00000152894.10	5350.91330	4308.24120	0.31260	6.84230	5.94840	HepG2	PUS1
PTPRK	ENSG00000152894.10	4045.69060	5466.04650	-0.43410	8.76790	7.96570	HepG2	RBM22
PTPRK	ENSG00000152894.10	3654.28890	4569.79830	-0.32250	2.51610	1.57420	HepG2	RBM27
PTPRK	ENSG00000152894.10	5002.88770	6080.93560	-0.28150	5.08140	4.38490	HepG2	NELFE
PTPRK	ENSG00000152894.10	4708.84450	5663.66720	-0.26640	4.65990	3.88920	HepG2	RECQL
PTPRK	ENSG00000152894.10	1921.49630	3267.39770	-0.76590	15.62970	14.33370	HepG2	RPS19
PTPRK	ENSG00000152894.10	2431.40450	4214.65850	-0.79360	13.37360	11.71110	HepG2	RPS2
PTPRK	ENSG00000152894.10	3848.00380	5388.12840	-0.48570	3.54960	2.64230	HepG2	RPS3A
PTPRK	ENSG00000152894.10	3230.35040	4302.15100	-0.41340	3.96190	2.66000	HepG2	RPS5
PTPRK	ENSG00000152894.10	3422.65400	2515.60880	0.44410	3.73380	2.83830	HepG2	RRP9
PTPRK	ENSG00000152894.10	2513.24520	3279.38560	-0.38390	3.38440	2.34160	HepG2	SERBP1
PTPRK	ENSG00000152894.10	5897.72590	4553.11200	0.37320	3.98550	3.15260	HepG2	SF3B1
PTPRK	ENSG00000152894.10	5043.18770	5688.68670	-0.17380	2.27180	1.72920	HepG2	SF3B4
PTPRK	ENSG00000152894.10	5513.18420	4618.05150	0.25550	5.98340	5.01390	HepG2	SLBP
PTPRK	ENSG00000152894.10	3026.24090	4309.77790	-0.51010	19.60190	18.12890	HepG2	SMN1
PTPRK	ENSG00000152894.10	3623.65720	4681.95040	-0.36970	2.21200	1.36530	HepG2	SMNDC1
PTPRK	ENSG00000152894.10	5481.52680	6173.70710	-0.17160	2.52060	2.03480	HepG2	SRFBP1
PTPRK	ENSG00000152894.10	3468.48260	5937.80700	-0.77560	36.51790	35.23030	HepG2	SRSF1
PTPRK	ENSG00000152894.10	3836.68410	4899.02640	-0.35260	2.32140	1.41470	HepG2	SRSF3
PTPRK	ENSG00000152894.10	3736.60440	4830.76500	-0.37050	8.64550	7.76560	HepG2	SRSF9
PTPRK	ENSG00000152894.10	4163.02850	5360.25460	-0.36470	8.47000	7.66860	HepG2	SSB
PTPRK	ENSG00000152894.10	5225.72940	7067.15640	-0.43550	3.56980	2.12760	HepG2	SSRP1
PTPRK	ENSG00000152894.10	2721.62700	3808.48440	-0.48470	3.34030	1.98870	HepG2	STAU1
PTPRK	ENSG00000152894.10	2649.78730	4686.89700	-0.82280	9.32930	7.21380	HepG2	STIP1
PTPRK	ENSG00000152894.10	4871.42340	7155.97040	-0.55480	4.67010	2.93530	HepG2	SUGP2
PTPRK	ENSG00000152894.10	2538.98170	3281.80270	-0.37020	2.83830	2.15410	HepG2	SUPV3L1
PTPRK	ENSG00000152894.10	4732.21690	5337.27010	-0.17360	1.86320	1.38630	HepG2	TAF15
PTPRK	ENSG00000152894.10	2181.10110	4032.32520	-0.88660	25.39620	24.16820	HepG2	TIAL1
PTPRK	ENSG00000152894.10	1898.87540	2668.30330	-0.49080	3.84100	2.00480	HepG2	TROVE2
PTPRK	ENSG00000152894.10	3742.85560	4877.49360	-0.38200	3.83170	3.09740	HepG2	U2AF1
PTPRK	ENSG00000152894.10	1327.21580	1938.64540	-0.54660	5.54050	4.45880	HepG2	UCHL5
PTPRK	ENSG00000152894.10	4374.76020	5381.71860	-0.29890	6.12670	5.15460	HepG2	UPF1
PTPRK	ENSG00000152894.10	1728.91460	3005.06270	-0.79750	7.43040	5.72520	HepG2	UPF2
PTPRK	ENSG00000152894.10	3467.48320	5195.82760	-0.58350	19.80030	18.41480	HepG2	UTP3
PTPRK	ENSG00000152894.10	3684.89840	5051.88310	-0.45520	2.98080	1.87780	HepG2	XRCC6
PTPRK	ENSG00000152894.10	1919.73140	3230.57560	-0.75090	10.83690	9.41560	HepG2	XRN2
PTPRK	ENSG00000152894.10	5370.48350	5918.85080	-0.14030	2.18580	1.68300	HepG2	ZNF622
PTPRK	ENSG00000152894.10	0.00000	13.58200	-99999.99999	3.94730	2.99550	K562	MTPAP
PTPRK	ENSG00000152894.10	1.78170	15.08410	-3.08170	2.54520	1.82590	K562	NSUN2
PTPRK	ENSG00000152894.10	0.54170	14.89420	-4.78120	3.86750	2.91240	K562	SF3A3
PTPRK	ENSG00000152894.10	0.44570	15.26030	-5.09760	3.89960	2.80680	K562	SRPK2
PTPRK	ENSG00000152894.10	1.17090	15.99450	-3.77180	3.25410	2.47840	K562	UPF1
PTPRK	ENSG00000152894.10	0.00000	13.68510	-99999.99999	4.17960	3.09620	K562	WDR3
PTPRK	ENSG00000152894.10	0.51560	14.23690	-4.78720	3.75440	2.77850	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTPRK is not available on ENCORE database.

3 RBPs can affect the splicing of PTPRK :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTPRK	ENSG00000152894.10	chr6	-	128812876	128812994	128718710	128718833	128841403	128841710	-0.05100	0.00023	0.00599	excluded	HepG2	U2AF1
SE	PTPRK	ENSG00000152894.10	chr6	-	128730438	128730477	128718710	128718833	128841403	128841744	0.09900	0.00044	0.03098	included	HepG2	NCBP2
SE	PTPRK	ENSG00000152894.10	chr6	-	128730438	128730477	128718710	128718833	128841403	128841744	0.21300	0.00033	0.01969	included	HepG2	SFPQ

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTPRK

General Information

Functions

Localization

Domains (AlphaFold: PTPRK)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTPRK is not avaliable on ENCORE database.

40 proteins are bound to PTPRK RNA:

eCLIP assay for PTPRK is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTPRK is not available on ENCORE database.

100 RBPs can affect the gene expression of PTPRK :

The Knockdown/knockout RNA-Seq assay for PTPRK is not available on ENCORE database.

3 RBPs can affect the splicing of PTPRK :

The Knockdown/knockout RNA-Seq assay for PTPRK is not avaliable on ENCORE database.