SCYL3

General Information

Gene Name       : SCYL3
Gene ID             : ENSG00000000457.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SCYL3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SCYL3ENSG00000000457.138.697.187.93ENCSR000AEF
HepG2SCYL3ENSG00000000457.131.853.212.53ENCSR985KAT
K562SCYL3ENSG00000000457.134.884.294.58ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SCYL3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SCYL3 RNA is bound by 1 proteins.  







eCLIP assay for SCYL3 is not avaliable on ENCORE database.





1 proteins are bound to SCYL3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1169862935169863061-5'-UTR,intron-Distal4.337364.78731HepG2NCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SCYL3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SCYL3 is not available on ENCORE database.

  • 73 RBPs can affect the levels of SCYL3.  








The Knockdown/knockout RNA-Seq assay for SCYL3 is not available on ENCORE database.





73 RBPs can affect the gene expression of SCYL3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SCYL3ENSG00000000457.9183.68160119.806100.616402.938802.31470HepG2ACO1
SCYL3ENSG00000000457.9361.52930128.299001.4945011.8888010.86150HepG2AKAP1
SCYL3ENSG00000000457.9208.94410120.324900.796104.710503.73110HepG2AKAP8L
SCYL3ENSG00000000457.9185.85160106.151000.807903.422402.55060HepG2ASCC1
SCYL3ENSG00000000457.9259.81820180.315800.526902.839402.14550HepG2AUH
SCYL3ENSG00000000457.9149.4166090.651300.720802.236901.42840HepG2BCLAF1
SCYL3ENSG00000000457.9217.51920100.852601.108806.282905.14690HepG2CIRBP
SCYL3ENSG00000000457.9184.64320119.727100.624903.026802.33830HepG2CKAP4
SCYL3ENSG00000000457.9223.60590126.193800.825203.223102.39250HepG2CNOT7
SCYL3ENSG00000000457.9189.28040120.735200.648602.552801.88800HepG2CPSF6
SCYL3ENSG00000000457.9182.41950110.779100.719504.082503.09190HepG2DDX19B
SCYL3ENSG00000000457.9198.02930117.108700.757803.437402.68790HepG2DDX21
SCYL3ENSG00000000457.9188.16390114.531700.716103.082002.11680HepG2DDX24
SCYL3ENSG00000000457.9345.67040122.888701.4919013.0772011.81110HepG2DDX3X
SCYL3ENSG00000000457.9204.03320114.608300.832004.553903.72230HepG2DKC1
SCYL3ENSG00000000457.9209.39770101.480301.044905.395404.58470HepG2EIF2S1
SCYL3ENSG00000000457.9172.1518098.086800.811503.244602.27190HepG2EIF3D
SCYL3ENSG00000000457.9172.50990110.544700.641902.572001.53130HepG2EIF3G
SCYL3ENSG00000000457.9304.01370112.134101.4388011.4366010.16390HepG2EIF4A3
SCYL3ENSG00000000457.9223.07600109.204201.030404.605503.73080HepG2EIF4B
SCYL3ENSG00000000457.9215.24100123.544800.800803.999502.70480HepG2ESF1
SCYL3ENSG00000000457.9297.72740207.016800.524103.020302.39640HepG2ETF1
SCYL3ENSG00000000457.9188.79280117.024900.689903.137902.25130HepG2EWSR1
SCYL3ENSG00000000457.9227.59790143.980800.660502.493701.75890HepG2FIP1L1
SCYL3ENSG00000000457.9245.56060120.935201.021703.283802.17480HepG2FTO
SCYL3ENSG00000000457.9135.1253077.265600.806302.888702.08610HepG2FUBP3
SCYL3ENSG00000000457.9211.06340113.179600.899004.262503.41750HepG2FXR1
SCYL3ENSG00000000457.9183.00820104.969100.801803.398802.66480HepG2G3BP1
SCYL3ENSG00000000457.9245.69550111.466401.140206.175004.83590HepG2G3BP2
SCYL3ENSG00000000457.9146.0800087.326900.742202.648801.77300HepG2GEMIN5
SCYL3ENSG00000000457.9231.21140136.872000.756303.414702.70950HepG2GPKOW
SCYL3ENSG00000000457.9170.59980114.348400.577102.579001.63040HepG2HDGF
SCYL3ENSG00000000457.9211.35230122.213100.790203.513302.79630HepG2HNRNPA1
SCYL3ENSG00000000457.9264.23100181.791200.539403.003002.03460HepG2HNRNPA2B1
SCYL3ENSG00000000457.9168.00110106.341200.659702.282601.64470HepG2HNRNPK
SCYL3ENSG00000000457.9259.17470180.189800.524302.880802.19540HepG2HNRNPL
SCYL3ENSG00000000457.9309.79560130.618601.245909.666808.57040HepG2HNRNPLL
SCYL3ENSG00000000457.9160.7246099.373300.693602.938801.95800HepG2HNRNPM
SCYL3ENSG00000000457.9201.30650106.691100.915902.186501.57810HepG2IGF2BP2
SCYL3ENSG00000000457.9260.09940100.156001.376705.125603.80400HepG2IGF2BP3
SCYL3ENSG00000000457.9205.29510107.327400.935603.989202.76380HepG2KHSRP
SCYL3ENSG00000000457.9222.93610133.795000.736503.630902.23700HepG2LIN28B
SCYL3ENSG00000000457.9224.74660113.219300.989105.261504.36310HepG2MAGOH
SCYL3ENSG00000000457.9203.18260113.846300.835603.451102.75330HepG2MATR3
SCYL3ENSG00000000457.9215.01070116.580600.883004.864403.81240HepG2MSI2
SCYL3ENSG00000000457.9196.43500116.522600.753303.097202.42970HepG2NCBP2
SCYL3ENSG00000000457.9177.25370119.480800.568902.569401.82160HepG2PRPF4
SCYL3ENSG00000000457.9135.2366079.122800.773202.353701.60530HepG2PRPF8
SCYL3ENSG00000000457.9293.51720198.616800.563403.083902.37490HepG2PUM2
SCYL3ENSG00000000457.9194.52750122.022600.672703.519202.84290HepG2PUS1
SCYL3ENSG00000000457.9245.84140142.166500.790002.877802.16070HepG2RAVER1
SCYL3ENSG00000000457.9305.92470173.029800.822106.011605.32100HepG2RBM22
SCYL3ENSG00000000457.9289.62700161.142900.845804.668903.77900HepG2SF3A3
SCYL3ENSG00000000457.9211.93000129.291900.712903.135802.38610HepG2SF3B1
SCYL3ENSG00000000457.9223.32240150.639000.567902.488901.92370HepG2SF3B4
SCYL3ENSG00000000457.9305.22690143.858101.085105.823304.68210HepG2SNRNP70
SCYL3ENSG00000000457.9358.05960195.434400.873408.172107.43700HepG2SRFBP1
SCYL3ENSG00000000457.9322.30470157.227501.035508.717007.98390HepG2SRSF1
SCYL3ENSG00000000457.9315.70880169.689700.895608.098307.30880HepG2SSB
SCYL3ENSG00000000457.9154.1201097.267300.663902.874101.91530HepG2SUPT6H
SCYL3ENSG00000000457.9192.00320102.114000.910803.435502.69140HepG2SUPV3L1
SCYL3ENSG00000000457.9188.25370127.288400.564502.104301.46010HepG2TARDBP
SCYL3ENSG00000000457.9205.31190129.858600.660803.232202.33300HepG2TIA1
SCYL3ENSG00000000457.9203.44520131.184500.632902.962402.44730HepG2TIAL1
SCYL3ENSG00000000457.9253.87780182.923100.472802.056101.31410HepG2TUFM
SCYL3ENSG00000000457.9255.17410123.195801.050406.421505.48200HepG2U2AF1
SCYL3ENSG00000000457.9218.82770142.909400.614603.304502.55240HepG2UPF1
SCYL3ENSG00000000457.9177.49650100.520100.820202.945502.19740HepG2XRN2
SCYL3ENSG00000000457.9248.69920157.172600.662004.312603.66960HepG2ZNF622
SCYL3ENSG00000000457.9455.82730314.128500.537004.455103.65480K562DDX47
SCYL3ENSG00000000457.9335.98480168.887900.992208.288806.86920K562EIF4A3
SCYL3ENSG00000000457.9315.76650213.496100.564502.834301.96870K562FMR1
SCYL3ENSG00000000457.9338.41110173.279200.965606.216705.06220K562G3BP2
SCYL3ENSG00000000457.9467.41070346.318000.432502.440001.68910K562HSPD1
SCYL3ENSG00000000457.9249.21260168.644200.563302.782301.55010K562NCBP2
SCYL3ENSG00000000457.9266.88350173.436800.621703.602902.68430K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SCYL3 is not available on ENCORE database.





2 RBPs can affect the splicing of SCYL3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESCYL3ENSG00000000457.9chr1-169833509169833649169831753169831938169836036169836114-0.456000.002870.02950excludedK562AQR
A3SSSCYL3ENSG00000000457.9chr1-169838068169838269169838068169838180169839395169839498-0.275000.000220.01570shorterK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SCYL3 is not avaliable on ENCORE database.