TRAPPC6A

General Information

Gene Name       : TRAPPC6A
Gene ID             : ENSG00000007255.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRAPPC6A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRAPPC6AENSG00000007255.100.9111.456.18ENCSR000AEF
HepG2TRAPPC6AENSG00000007255.107.831.464.64ENCSR985KAT
K562TRAPPC6AENSG00000007255.1010.303.356.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRAPPC6A is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRAPPC6A RNA is bound by 11 proteins.  







eCLIP assay for TRAPPC6A is not avaliable on ENCORE database.





11 proteins are bound to TRAPPC6A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr194566642345666476-3'-UTR,CDS,intron-Distal4.115516.99054K562DDX55
chr194566625545666297-3'-UTR,intron-Distal4.806464.51142K562DDX6
chr194566643145666478-3'-UTR,CDS,intron-Distal4.057474.43788HepG2SUB1
chr194566622945666342-3'-UTR,intron-Distal,intron-Proximal3.5981010.49826K562UPF1
chr194568138845681456-CDS,intron-Distal5.5311215.15896HepG2SUB1
chr194566803345668112-CDS,intron-Distal,intron-Proximal4.574993.59236HepG2AQR
chr194566747845667524-CDS,intron-Distal,intron-Proximal4.210815.47926K562AQR
chr194567736245677441-intron-Distal5.252745.28062HepG2XPO5
chr194566802645668110-intron-Distal,intron-Proximal6.7481219.16919K562AQR
chr194567175345671837-intron-Distal3.764933.07008K562NONO
chr194567879745678897-intron-Distal3.881903.34627K562HNRNPK
chr194567877445678898-intron-Distal4.257803.80778HepG2QKI
chr194566862345668765-intron-Distal3.989833.80314K562CSTF2T
chr194568104445681214-intron-Distal4.507195.19780K562NONO
chr194566805845668109-intron-Distal,intron-Proximal3.706363.47285K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRAPPC6A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRAPPC6A is not available on ENCORE database.

  • 89 RBPs can affect the levels of TRAPPC6A.  








The Knockdown/knockout RNA-Seq assay for TRAPPC6A is not available on ENCORE database.





89 RBPs can affect the gene expression of TRAPPC6A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRAPPC6AENSG00000007255.653.44530119.24330-1.157805.417104.62210HepG2ACO1
TRAPPC6AENSG00000007255.6169.64420297.89960-0.812302.872302.08480HepG2CIRBP
TRAPPC6AENSG00000007255.6279.13570153.621400.861502.808702.03780HepG2CNOT7
TRAPPC6AENSG00000007255.658.9546023.259201.341702.954602.24730HepG2CPSF6
TRAPPC6AENSG00000007255.6152.8196074.819901.030203.532302.71210HepG2DAZAP1
TRAPPC6AENSG00000007255.6195.51370114.075200.777203.987103.20350HepG2DKC1
TRAPPC6AENSG00000007255.690.4510040.291501.166604.133503.28840HepG2DNAJC21
TRAPPC6AENSG00000007255.6118.0030039.939401.562808.760407.67780HepG2DNAJC2
TRAPPC6AENSG00000007255.6171.4827070.726401.277605.055903.97370HepG2EIF4G2
TRAPPC6AENSG00000007255.665.20870234.36310-1.8456017.0578015.77180HepG2ETF1
TRAPPC6AENSG00000007255.6116.3155059.155700.975403.675502.30730HepG2FAM120A
TRAPPC6AENSG00000007255.6124.40450257.88910-1.051707.229305.99740HepG2FUBP3
TRAPPC6AENSG00000007255.6189.25620334.37390-0.821102.876902.17080HepG2FXR1
TRAPPC6AENSG00000007255.6216.40780133.077900.701403.020501.43930HepG2HNRNPD
TRAPPC6AENSG00000007255.698.5561060.426500.705702.240001.59010HepG2HNRNPF
TRAPPC6AENSG00000007255.6189.32660314.26310-0.731102.404501.75100HepG2HNRNPK
TRAPPC6AENSG00000007255.6174.4318068.147601.355809.814308.62080HepG2HNRNPL
TRAPPC6AENSG00000007255.677.9600025.154801.631803.238802.56430HepG2HNRNPLL
TRAPPC6AENSG00000007255.631.6553080.25190-1.342102.292401.42830HepG2HNRNPM
TRAPPC6AENSG00000007255.6101.8496044.948201.180004.796104.01580HepG2HNRNPU
TRAPPC6AENSG00000007255.694.2295059.503600.663101.976401.35660HepG2IGF2BP1
TRAPPC6AENSG00000007255.684.6097045.912900.881802.682601.96080HepG2ILF2
TRAPPC6AENSG00000007255.6253.55900146.547600.790904.006302.52050HepG2KHDRBS1
TRAPPC6AENSG00000007255.6121.48530317.03420-1.383905.604104.12460HepG2KHSRP
TRAPPC6AENSG00000007255.6187.72020334.49170-0.833402.366301.75860HepG2MAGOH
TRAPPC6AENSG00000007255.6195.35790344.21110-0.817202.945102.29310HepG2NCBP2
TRAPPC6AENSG00000007255.6256.2895074.192601.788309.725208.32310HepG2NOL12
TRAPPC6AENSG00000007255.677.8092044.489500.806402.096901.35210HepG2PARN
TRAPPC6AENSG00000007255.6146.92790282.52390-0.943307.732506.79910HepG2PCBP1
TRAPPC6AENSG00000007255.691.1734040.090001.185304.378203.47170HepG2PPIL4
TRAPPC6AENSG00000007255.6217.0127070.830301.615204.980204.20880HepG2PUF60
TRAPPC6AENSG00000007255.6147.9675075.197700.976405.458404.68350HepG2PUM1
TRAPPC6AENSG00000007255.6147.6192075.137700.974204.619603.76370HepG2PUM2
TRAPPC6AENSG00000007255.6268.55130121.452301.1447010.517309.44870HepG2PUS1
TRAPPC6AENSG00000007255.614.9022051.00380-1.775103.255702.49310HepG2RAVER1
TRAPPC6AENSG00000007255.6157.38270282.56650-0.844305.548604.62420HepG2RBM25
TRAPPC6AENSG00000007255.6287.39600148.426600.953204.175102.30970HepG2RBM47
TRAPPC6AENSG00000007255.6204.71070319.93690-0.644204.182803.54240HepG2NELFE
TRAPPC6AENSG00000007255.6195.04690297.98180-0.611403.745203.04280HepG2RECQL
TRAPPC6AENSG00000007255.623.4550051.98970-1.148302.295801.57280HepG2RRP9
TRAPPC6AENSG00000007255.6122.2755040.027701.611008.723007.67470HepG2SAFB2
TRAPPC6AENSG00000007255.642.5805082.91610-0.961502.438201.80690HepG2SF3A3
TRAPPC6AENSG00000007255.6156.81330299.30030-0.932507.279906.39310HepG2SF3B4
TRAPPC6AENSG00000007255.6157.7694067.932001.215607.638106.56130HepG2SLBP
TRAPPC6AENSG00000007255.681.8555046.677800.810202.233901.64620HepG2SMN1
TRAPPC6AENSG00000007255.6131.5567052.178101.334106.176604.70320HepG2SMNDC1
TRAPPC6AENSG00000007255.6116.1681049.796701.222004.111002.14020HepG2SND1
TRAPPC6AENSG00000007255.667.4418027.700201.283602.579901.82610HepG2SNRNP70
TRAPPC6AENSG00000007255.6156.83030221.24550-0.496402.308601.83750HepG2SRFBP1
TRAPPC6AENSG00000007255.651.24720312.40670-2.6079034.6131033.35260HepG2SRSF1
TRAPPC6AENSG00000007255.6128.0107069.944400.871903.856203.13890HepG2SRSF5
TRAPPC6AENSG00000007255.685.06420254.16120-1.5791016.1214014.98700HepG2SRSF9
TRAPPC6AENSG00000007255.6285.08670192.095200.569503.557702.99260HepG2SSB
TRAPPC6AENSG00000007255.6163.5004079.537701.039506.107005.24900HepG2SUCLG1
TRAPPC6AENSG00000007255.6125.4783067.896300.885901.921701.34350HepG2SUPV3L1
TRAPPC6AENSG00000007255.6101.04690280.80880-1.4746014.3789013.24680HepG2TAF15
TRAPPC6AENSG00000007255.6187.1167043.671002.099105.848505.17270HepG2TIAL1
TRAPPC6AENSG00000007255.6129.0724044.066301.550308.764907.84920HepG2TRIM56
TRAPPC6AENSG00000007255.6110.8523069.211500.679502.116901.36060HepG2TUFM
TRAPPC6AENSG00000007255.628.3734099.52210-1.810503.467702.76940HepG2U2AF1
TRAPPC6AENSG00000007255.6174.9109073.268101.255305.428504.23520HepG2UBE2L3
TRAPPC6AENSG00000007255.6114.3010073.533900.636302.068101.44920HepG2UPF1
TRAPPC6AENSG00000007255.6355.41390138.323901.361306.426104.75730HepG2XPO5
TRAPPC6AENSG00000007255.6136.3074069.185800.978203.751202.30210K562ABCF1
TRAPPC6AENSG00000007255.6128.0320079.239800.692102.287501.34450K562CSTF2
TRAPPC6AENSG00000007255.6266.87700189.971400.490302.653401.38510K562DDX6
TRAPPC6AENSG00000007255.6265.71090353.13010-0.410302.121101.36550K562DKC1
TRAPPC6AENSG00000007255.6297.56570205.815000.531803.356702.01260K562EIF2S1
TRAPPC6AENSG00000007255.6242.63560117.590801.044903.111602.35620K562EIF2S2
TRAPPC6AENSG00000007255.6147.0727049.738901.564002.263801.49660K562FIP1L1
TRAPPC6AENSG00000007255.665.35320203.58110-1.6393013.0013011.78820K562FXR1
TRAPPC6AENSG00000007255.61.1048038.57690-5.125909.371907.91580K562G3BP2
TRAPPC6AENSG00000007255.6146.9920067.430901.124204.886603.83740K562HSPD1
TRAPPC6AENSG00000007255.6196.49890122.456800.682103.386702.35160K562MATR3
TRAPPC6AENSG00000007255.6141.0832078.115400.852802.669901.40830K562NONO
TRAPPC6AENSG00000007255.660.76920120.73300-0.990403.176201.84100K562PABPC1
TRAPPC6AENSG00000007255.6277.27650161.271200.781702.771801.77990K562PABPN1
TRAPPC6AENSG00000007255.660.87760109.17290-0.842602.556401.61720K562PCBP2
TRAPPC6AENSG00000007255.6192.34370101.308000.924803.402602.47900K562PCBP3
TRAPPC6AENSG00000007255.6131.5692077.700800.759702.687301.89920K562POLR2G
TRAPPC6AENSG00000007255.6146.5033056.468001.375306.188704.88010K562PPIG
TRAPPC6AENSG00000007255.6339.17850191.821000.822203.157201.55950K562PPP1R8
TRAPPC6AENSG00000007255.663.23130114.28020-0.853903.097802.20330K562RBM22
TRAPPC6AENSG00000007255.6193.10240120.274700.682903.131201.96100K562NELFE
TRAPPC6AENSG00000007255.6101.57510154.76680-0.607502.385301.50730K562SRPK2
TRAPPC6AENSG00000007255.664.20250116.90540-0.864602.918402.19540K562SRSF1
TRAPPC6AENSG00000007255.6208.26650110.436800.915105.229303.70110K562SRSF5
TRAPPC6AENSG00000007255.626.7681077.94410-1.541905.196904.06370K562SYNCRIP
TRAPPC6AENSG00000007255.6272.84710118.291201.205602.031501.41910K562TARDBP
TRAPPC6AENSG00000007255.6274.28950114.111701.265205.903804.63970K562TIA1
TRAPPC6AENSG00000007255.6196.31040112.036000.809103.910002.57910K562TRA2A
TRAPPC6AENSG00000007255.611.3425037.32710-1.718502.997001.85120K562U2AF1
TRAPPC6AENSG00000007255.64.9681038.57250-2.956806.347605.13870K562U2AF2
TRAPPC6AENSG00000007255.668.61700160.16050-1.222904.929802.66190K562XRCC6
TRAPPC6AENSG00000007255.6142.4403080.371200.825502.827001.60450K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRAPPC6A is not available on ENCORE database.





9 RBPs can affect the splicing of TRAPPC6A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRAPPC6AENSG00000007255.6chr19-4566838445668452456681104566822845681392456814950.196000.000180.02237includedHepG2G3BP1
SETRAPPC6AENSG00000007255.6chr19-4566838445668452456681104566822845681392456814950.204000.000340.01105includedHepG2HNRNPK
SETRAPPC6AENSG00000007255.6chr19-456683844566845245668110456682284568135045681495-0.170000.000200.02199excludedHepG2DDX3X
SETRAPPC6AENSG00000007255.6chr19-4566838445668452456681104566822845681392456814950.173000.001850.08820includedHepG2NCBP2
SETRAPPC6AENSG00000007255.6chr19-456683844566845245668110456682284568135045681495-0.169000.000330.02562excludedHepG2NCBP2
SETRAPPC6AENSG00000007255.6chr19-456683844566845245668110456682284568135045681495-0.172000.000040.00340excludedHepG2MATR3
SETRAPPC6AENSG00000007255.6chr19-4566838445668452456681104566822845681392456814950.248000.000010.00889includedHepG2XPO5
SETRAPPC6AENSG00000007255.6chr19-4566838445668452456681104566822845681350456814950.221000.000140.02300includedHepG2SSB
SETRAPPC6AENSG00000007255.6chr19-456683844566845245668110456682284568139245681495-0.316000.000160.01105excludedHepG2PCBP1
A3SSTRAPPC6AENSG00000007255.6chr19-4566742145667542456674214566750545668110456682280.080000.001290.09629longerHepG2RBM22
A5SSTRAPPC6AENSG00000007255.6chr19-4568135045681495456813924568149545668384456684520.284000.000150.01985longerHepG2RBM22
A5SSTRAPPC6AENSG00000007255.6chr19-4568135045681495456813924568149545668384456684520.242000.000130.05891longerHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRAPPC6A is not avaliable on ENCORE database.