RAB12

General Information

Gene Name       : RAB12
Gene ID             : ENSG00000206418.4
Essential Gene : No

Functions

Localization

Domains (AlphaFold: RAB12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RAB12ENSG00000206418.415.0611.7213.39ENCSR000AEF
HepG2RAB12ENSG00000206418.412.9624.3518.66ENCSR985KAT
K562RAB12ENSG00000206418.414.9814.4814.73ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RAB12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • RAB12 RNA is bound by 27 proteins.  







eCLIP assay for RAB12 is not avaliable on ENCORE database.





27 proteins are bound to RAB12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1886392798639346+3'-UTR3.057527.22523K562KHSRP
chr1886392768639331+3'-UTR4.8935311.79290HepG2FUBP3
chr1886384268638510+3'-UTR3.241525.39484K562FAM120A
chr1886391848639274+3'-UTR4.206193.46058HepG2PABPN1
chr1886391858639234+3'-UTR4.062353.71057HepG2LSM11
chr1886391848639300+3'-UTR6.3862431.51690K562ZC3H11A
chr1886383268638460+3'-UTR3.8839018.85164K562PUM2
chr1886391848639257+3'-UTR3.709486.22546K562LSM11
chr1886392848639367+3'-UTR3.064263.79688HepG2ZC3H11A
chr1886096778609860+5'-UTR,CDS3.317408.64478K562RBFOX2
chr1886096638609742+5'-UTR,CDS4.307165.35385HepG2PRPF4
chr1886096388609734+5'-UTR,CDS3.3390211.13092HepG2DDX3X
chr1886096778609790+5'-UTR,CDS4.037123.29554HepG2GTF2F1
chr1886094618609563+5'-UTR3.458886.88189HepG2DDX3X
chr1886096568609722+5'-UTR3.975235.55608HepG2XRN2
chr1886097238609795+5'-UTR,CDS3.626836.39716K562GEMIN5
chr1886095478609603+5'-UTR3.969385.39661K562GEMIN5
chr1886097078609829+5'-UTR,CDS4.889146.88558K562HNRNPM
chr1886331618633231+CDS,intron-Proximal3.606764.13733K562SMNDC1
chr1886333028633324+CDS4.450304.78571K562UCHL5
chr1886363108636338+CDS3.207746.01266K562LIN28B
chr1886331328633237+CDS,intron-Proximal4.050939.95582K562SF3B4
chr1886363388636356+CDS,intron-Proximal3.341996.01266K562LIN28B
chr1886355698635619+CDS3.367074.74886HepG2BCLAF1
chr1886243978624456+intron-Distal3.731485.14864K562KHSRP
chr1886246568624712+intron-Distal4.7376220.10144K562KHSRP
chr1886250048625116+intron-Distal,intron-Proximal4.872747.04874K562EFTUD2
chr1886272418627299+intron-Distal3.228963.10810K562HNRNPM
chr1886246398624656+intron-Distal4.5083819.02467K562KHSRP
chr1886256148625684+intron-Distal3.606047.41217HepG2QKI
chr1886275118627620+intron-Distal3.008634.14287K562KHSRP
chr1886219098622030+intron-Distal4.447164.83283HepG2KHSRP
chr1886271448627197+intron-Distal5.225359.48713K562HNRNPM
chr1886172508617317+intron-Distal4.008893.14791K562HNRNPL
chr1886218928622102+intron-Distal3.584774.16303HepG2SFPQ
chr1886246238624711+intron-Distal3.901205.85689HepG2KHSRP
chr1886289428628997+intron-Distal3.855033.42844K562KHSRP
chr1886250098625142+intron-Distal,intron-Proximal4.878395.70555K562PRPF8
chr1886271428627236+intron-Distal3.219765.83174HepG2HNRNPM
chr1886246218624639+intron-Distal4.1976612.68355K562KHSRP
chr1886326758632785+intron-Distal3.780867.86956K562EXOSC5
chr1886351868635278+intron-Distal4.182843.89294K562KHSRP
chr1886204498620533+intron-Distal4.487836.48336HepG2XPO5
chr1886323418632446+intron-Distal3.429904.57394K562HNRNPM
chr1886244958624564+intron-Distal3.896355.98773K562KHSRP
chr1886326748632790+intron-Distal5.6795114.82580K562TARDBP
chr1886245868624621+intron-Distal3.473247.25305K562KHSRP
chr1886271978627241+intron-Distal3.508685.05066K562HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RAB12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RAB12 is not available on ENCORE database.

  • 93 RBPs can affect the levels of RAB12.  








The Knockdown/knockout RNA-Seq assay for RAB12 is not available on ENCORE database.





93 RBPs can affect the gene expression of RAB12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RAB12ENSG00000206418.3412.60610522.85010-0.341602.404601.68360HepG2AKAP8L
RAB12ENSG00000206418.3536.15610706.26750-0.397602.349901.62300HepG2ASCC1
RAB12ENSG00000206418.3977.76220782.448900.321403.216902.48600HepG2AUH
RAB12ENSG00000206418.3511.57550390.840300.388302.145401.35030HepG2BCLAF1
RAB12ENSG00000206418.3700.16690531.468400.397603.023301.73580HepG2BUD13
RAB12ENSG00000206418.31039.57710642.425500.694309.329708.03760HepG2CALR
RAB12ENSG00000206418.3516.99640720.13470-0.478102.153901.48510HepG2CNOT7
RAB12ENSG00000206418.3643.68590481.289800.419404.391703.37160HepG2DDX19B
RAB12ENSG00000206418.3732.93370482.331900.603606.786105.07110HepG2DDX1
RAB12ENSG00000206418.3351.67340491.78050-0.483803.161002.43950HepG2DDX21
RAB12ENSG00000206418.3587.73920442.187900.410402.221701.52230HepG2DDX55
RAB12ENSG00000206418.31039.91570720.975700.528302.349401.44920HepG2DDX59
RAB12ENSG00000206418.31106.28710702.500800.655105.405004.56760HepG2DDX6
RAB12ENSG00000206418.3261.28710472.95150-0.856109.526908.28540HepG2DNAJC21
RAB12ENSG00000206418.3320.10920538.10550-0.749307.030405.26520HepG2EIF2S2
RAB12ENSG00000206418.31142.90450898.299300.347304.132003.42260HepG2ETF1
RAB12ENSG00000206418.3766.97070508.531400.592705.493304.31520HepG2EWSR1
RAB12ENSG00000206418.3522.58710716.21470-0.454702.429401.70460HepG2FIP1L1
RAB12ENSG00000206418.3546.90780368.077700.571203.693002.23380HepG2FKBP4
RAB12ENSG00000206418.3511.51360752.98790-0.557904.193703.35480HepG2FXR1
RAB12ENSG00000206418.3453.74360719.71980-0.665605.044004.19600HepG2GPKOW
RAB12ENSG00000206418.31054.99080706.291800.578807.133405.75170HepG2HNRNPA2B1
RAB12ENSG00000206418.31061.55610707.432200.585405.545904.58350HepG2HNRNPK
RAB12ENSG00000206418.3159.73940494.20210-1.6294023.4884021.25670HepG2HNRNPM
RAB12ENSG00000206418.3901.57520709.880800.344802.054501.46360HepG2IGF2BP2
RAB12ENSG00000206418.3584.98040757.43680-0.372701.954401.41960HepG2MATR3
RAB12ENSG00000206418.3811.13840579.728400.484504.163103.18090HepG2MSI2
RAB12ENSG00000206418.3631.56020486.783100.375502.511701.35650HepG2NAA15
RAB12ENSG00000206418.3360.58610775.25380-1.1043012.6375011.33890HepG2NCBP2
RAB12ENSG00000206418.3643.77160482.037300.417303.641802.76480HepG2PRPF4
RAB12ENSG00000206418.3410.99520727.48380-0.8238010.054809.01600HepG2PUF60
RAB12ENSG00000206418.3963.13710772.201700.318702.020101.49720HepG2PUM1
RAB12ENSG00000206418.3379.52470769.22180-1.0192015.9014014.58100HepG2QKI
RAB12ENSG00000206418.31080.70040585.292300.884605.867904.86790HepG2RAVER1
RAB12ENSG00000206418.31181.48840779.753600.599408.264306.88730HepG2RBM15
RAB12ENSG00000206418.3920.20560698.128800.398403.291702.56220HepG2RBM25
RAB12ENSG00000206418.3632.48230790.46150-0.321702.582902.05710HepG2NELFE
RAB12ENSG00000206418.3393.40440736.22730-0.9041014.2785013.04750HepG2RECQL
RAB12ENSG00000206418.3512.71950723.31630-0.496502.725101.93200HepG2RPS3A
RAB12ENSG00000206418.3643.00660497.457100.370202.280101.30990HepG2RPS5
RAB12ENSG00000206418.31266.19350717.622000.819107.557206.40800HepG2SF3A3
RAB12ENSG00000206418.31146.29730679.842600.753608.304507.14390HepG2SF3B1
RAB12ENSG00000206418.3903.21910739.468700.288502.440801.88080HepG2SF3B4
RAB12ENSG00000206418.3394.01670547.92270-0.475704.633503.83670HepG2SMN1
RAB12ENSG00000206418.3800.83900596.320800.425302.179001.34010HepG2SMNDC1
RAB12ENSG00000206418.31166.79050848.048800.460207.070606.37120HepG2SRFBP1
RAB12ENSG00000206418.3573.98320771.85480-0.427304.184303.63220HepG2SRSF1
RAB12ENSG00000206418.3986.03400731.496800.430702.370701.45310HepG2SRSF3
RAB12ENSG00000206418.3468.97410596.75220-0.347602.637001.95690HepG2SRSF7
RAB12ENSG00000206418.3950.32170627.953300.597707.312806.49210HepG2SRSF9
RAB12ENSG00000206418.3866.42770546.946600.663604.075902.60180HepG2SUB1
RAB12ENSG00000206418.3696.38680816.86870-0.230201.991401.44730HepG2SUCLG1
RAB12ENSG00000206418.31186.12230789.046400.588004.306002.63650HepG2SUGP2
RAB12ENSG00000206418.3645.58660483.683400.416402.924501.95890HepG2SUPT6H
RAB12ENSG00000206418.3926.11150693.799800.416604.215903.54560HepG2TAF15
RAB12ENSG00000206418.3308.19990765.24000-1.312008.390806.64290HepG2TBRG4
RAB12ENSG00000206418.3408.31370295.081700.468502.749801.75720HepG2TFIP11
RAB12ENSG00000206418.3898.20490637.479300.494605.106503.98320HepG2TIA1
RAB12ENSG00000206418.3384.91930612.71560-0.670705.398904.53730HepG2U2AF1
RAB12ENSG00000206418.3382.32450260.071300.555803.457502.61300HepG2UCHL5
RAB12ENSG00000206418.3777.82610636.419700.289402.425001.76430HepG2UPF1
RAB12ENSG00000206418.3844.63860654.159800.368603.503402.33950HepG2UTP18
RAB12ENSG00000206418.3473.38500614.44010-0.376303.055102.43120HepG2UTP3
RAB12ENSG00000206418.31466.76710866.967600.7585017.6568016.34560K562AGGF1
RAB12ENSG00000206418.32009.44610834.310301.2680027.9519026.28940K562AQR
RAB12ENSG00000206418.3863.22720618.750300.480303.539602.55310K562BOP1
RAB12ENSG00000206418.3870.75870657.934700.404203.361402.49460K562CPSF6
RAB12ENSG00000206418.31770.061201409.993500.328003.423702.33680K562CELF1
RAB12ENSG00000206418.31355.94670981.359700.466306.996506.02620K562DDX47
RAB12ENSG00000206418.31262.16440970.684800.378704.610203.43670K562DKC1
RAB12ENSG00000206418.3408.92990576.83000-0.496304.473803.58640K562EIF2S2
RAB12ENSG00000206418.31078.22900669.383400.687707.533306.08430K562FMR1
RAB12ENSG00000206418.3745.72190567.341300.394302.381301.53820K562FTO
RAB12ENSG00000206418.3605.50230419.698900.528704.766502.96200K562FUS
RAB12ENSG00000206418.3970.53740600.593800.692305.371504.31210K562G3BP2
RAB12ENSG00000206418.31094.79560768.669300.510104.914303.90850K562GRSF1
RAB12ENSG00000206418.3348.87220495.98950-0.507603.422602.14400K562HNRNPF
RAB12ENSG00000206418.31289.53520926.144300.477403.355702.48180K562HSPD1
RAB12ENSG00000206418.3884.88840642.050800.462702.872601.82270K562IGF2BP2
RAB12ENSG00000206418.31216.80670957.345700.345903.138902.25700K562KIF1C
RAB12ENSG00000206418.31031.02370536.339000.942809.091407.29210K562KRR1
RAB12ENSG00000206418.31156.50600916.448200.335502.637201.59570K562MAK16
RAB12ENSG00000206418.31560.999001072.474600.541407.109505.52580K562MBNL1
RAB12ENSG00000206418.31104.56650751.730600.555103.847602.76100K562NAA15
RAB12ENSG00000206418.31587.427201254.387600.339602.813701.31450K562NOL12
RAB12ENSG00000206418.31453.46490993.803300.548403.455401.42670K562PPIL4
RAB12ENSG00000206418.3667.61180390.562600.773407.058005.86130K562PRPF8
RAB12ENSG00000206418.31905.350401330.834300.517607.465605.64280K562PUM1
RAB12ENSG00000206418.31174.00900894.583600.392102.799702.25420K562PUS1
RAB12ENSG00000206418.3846.03370573.074500.561902.799401.37260K562RAVER1
RAB12ENSG00000206418.31179.51510871.705300.436205.194004.40450K562RBM15
RAB12ENSG00000206418.3404.21170610.03630-0.593804.862002.48510K562RECQL
RAB12ENSG00000206418.3795.88770397.845101.000306.196604.96740K562RPS19
RAB12ENSG00000206418.3616.55800399.348300.626503.745302.17800K562RRP9
RAB12ENSG00000206418.3947.02910740.178900.355403.379702.48280K562SF3A3
RAB12ENSG00000206418.31007.70700597.352800.754307.114105.50730K562SF3B1
RAB12ENSG00000206418.3840.72670624.673100.428404.021802.98250K562SF3B4
RAB12ENSG00000206418.31223.14660819.774200.577204.752503.04050K562STAU1
RAB12ENSG00000206418.3633.49110378.172500.744206.074204.52450K562SUPV3L1
RAB12ENSG00000206418.3808.67720582.351800.473603.120401.94830K562U2AF1
RAB12ENSG00000206418.3852.87490601.383400.503905.209504.11300K562U2AF2
RAB12ENSG00000206418.3545.74920400.237300.447302.683501.68280K562UCHL5
RAB12ENSG00000206418.3465.31870795.42290-0.7735012.4195011.03470K562UPF1
RAB12ENSG00000206418.3937.68730656.614800.514003.970602.52260K562UTP3
RAB12ENSG00000206418.3861.32610707.737900.283202.605401.78200K562WDR43
RAB12ENSG00000206418.31432.58830988.766000.534806.527704.54420K562WRN
RAB12ENSG00000206418.31314.60960939.749300.484205.061603.83850K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RAB12 is not available on ENCORE database.





7 RBPs can affect the splicing of RAB12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERAB12ENSG00000206418.3chr18+8625798862599286249358624996863318686333250.177000.000020.00541includedHepG2HNRNPM
SERAB12ENSG00000206418.3chr18+862579886259928624935862499686331868633325-0.083000.000000.00010excludedHepG2HNRNPK
SERAB12ENSG00000206418.3chr18+8625798862599286249358624996863318686333250.097000.000100.01274includedHepG2TBRG4
SERAB12ENSG00000206418.3chr18+8625798862599286249358624996863318686333250.276000.000000.00005includedHepG2QKI
SERAB12ENSG00000206418.3chr18+862579886259928624935862499686331868633325-0.076000.000060.00657excludedHepG2AKAP1
SERAB12ENSG00000206418.3chr18+862579886259928624935862499686331868633325-0.081000.000270.02566excludedHepG2IGF2BP3
A5SSRAB12ENSG00000206418.3chr18+8635530863567186355308635620863625086363550.051000.000080.00214longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RAB12 is not avaliable on ENCORE database.