GGCT

General Information

Gene Name       : GGCT
Gene ID             : ENSG00000006625.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GGCT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GGCTENSG00000006625.1772.3259.6565.98ENCSR000AEF
HepG2GGCTENSG00000006625.1737.0478.6557.84ENCSR985KAT
K562GGCTENSG00000006625.1792.0789.2190.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GGCT is not avaliable on ENCORE database.



Proteins bound to RNA
  • GGCT RNA is bound by 7 proteins.  







eCLIP assay for GGCT is not avaliable on ENCORE database.





7 proteins are bound to GGCT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr73053634030536417-3'-UTR,intron-Distal,intron-Proximal4.7644314.70289HepG2SUB1
chr73053633330536392-3'-UTR,intron-Distal,intron-Proximal4.786375.21253K562LIN28B
chr73053681230536850-3'-UTR,CDS,intron-Distal4.542324.55369K562LIN28B
chr73053633530536424-3'-UTR,intron-Distal,intron-Proximal4.246104.51210K562NOLC1
chr73053853230538554-3'-UTR,CDS,intron-Distal3.765723.06853K562LIN28B
chr73053842030538460-3'-UTR,CDS,intron-Distal3.3372610.36268K562YBX3
chr73054437930544442-5'-UTR,intron-Distal,intron-Proximal3.193933.59198K562DDX3X
chr73054425230544379-5'-UTR,CDS,intron-Distal3.7951917.03995K562DDX3X
chr73059024630590327-5'-UTR,intron-Distal,intron-Proximal4.450114.34038HepG2BCLAF1
chr73054418330544204-CDS,intron-Distal4.516435.41983K562LIN28B
chr73058407930584152-intron-Distal5.7567811.94006HepG2PTBP1
chr73058409530584150-intron-Distal4.535785.16181K562PTBP1
chr73056041730560482-intron-Distal5.653825.89856K562PTBP1
chr73058415230584203-intron-Distal3.219103.00914HepG2PTBP1
chr73058402230584095-intron-Distal5.796769.44534K562PTBP1
chr73058402830584079-intron-Distal5.025676.76922HepG2PTBP1
chr73056041630560485-intron-Distal5.7570312.28789HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GGCT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GGCT is not available on ENCORE database.

  • 108 RBPs can affect the levels of GGCT.  








The Knockdown/knockout RNA-Seq assay for GGCT is not available on ENCORE database.





108 RBPs can affect the gene expression of GGCT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GGCTENSG00000006625.13372.96300485.03750-0.379102.833302.21920HepG2ACO1
GGCTENSG00000006625.13479.16460651.67620-0.443602.263601.77730HepG2AKAP1
GGCTENSG00000006625.13365.75220487.30360-0.414003.123102.31430HepG2AKAP8L
GGCTENSG00000006625.13339.63790539.22800-0.666904.751403.73460HepG2ASCC1
GGCTENSG00000006625.13620.54170862.07280-0.474305.766704.83730HepG2AUH
GGCTENSG00000006625.13309.51610574.17430-0.891507.483106.08980HepG2BCLAF1
GGCTENSG00000006625.13329.37380773.93230-1.2325018.3195016.98060HepG2BOP1
GGCTENSG00000006625.13312.57940484.91670-0.633506.779605.82240HepG2CKAP4
GGCTENSG00000006625.13367.50400710.50620-0.9511010.578109.32040HepG2CPSF6
GGCTENSG00000006625.13705.35750892.24810-0.339102.999002.33470HepG2CELF1
GGCTENSG00000006625.13591.79880959.34410-0.6969013.0661011.65650HepG2DAZAP1
GGCTENSG00000006625.13361.06840448.58310-0.313102.187901.43970HepG2DDX19B
GGCTENSG00000006625.13362.31410607.89780-0.746604.675203.05810HepG2DDX27
GGCTENSG00000006625.13279.51280624.30080-1.1593012.5353011.29310HepG2DDX3X
GGCTENSG00000006625.13431.10230649.69950-0.591703.734002.85100HepG2DDX55
GGCTENSG00000006625.13312.80770536.18300-0.777405.580104.72970HepG2DDX6
GGCTENSG00000006625.13261.71650378.23000-0.531303.223802.16880HepG2DHX30
GGCTENSG00000006625.13226.79970392.15740-0.790007.351706.24880HepG2DNAJC21
GGCTENSG00000006625.13271.12840388.67090-0.519604.322203.53990HepG2DNAJC2
GGCTENSG00000006625.13271.23490515.54920-0.926607.786706.82770HepG2EIF2S1
GGCTENSG00000006625.13436.57250569.79260-0.384201.882601.35120HepG2EIF4A3
GGCTENSG00000006625.13710.83920946.48770-0.413104.419903.40380HepG2EIF4G1
GGCTENSG00000006625.13647.68470906.66820-0.485303.903702.94590HepG2EIF4G2
GGCTENSG00000006625.13675.19680989.80780-0.551807.748906.82890HepG2ETF1
GGCTENSG00000006625.13348.65590711.73610-1.029504.786703.45820HepG2FTO
GGCTENSG00000006625.13317.80740533.24020-0.746604.177303.36890HepG2G3BP1
GGCTENSG00000006625.13163.93170352.36510-1.104009.548607.93930HepG2GEMIN5
GGCTENSG00000006625.13564.47620805.39810-0.512803.458902.74910HepG2GPKOW
GGCTENSG00000006625.13171.24670395.91420-1.2091011.3746010.20470HepG2HNRNPA1
GGCTENSG00000006625.13662.28540881.68480-0.412804.139203.03250HepG2HNRNPA2B1
GGCTENSG00000006625.13316.07030440.37340-0.478502.696602.01140HepG2HNRNPC
GGCTENSG00000006625.13305.98700566.70770-0.8891010.987309.68420HepG2HNRNPF
GGCTENSG00000006625.13710.07810873.87640-0.299502.924802.23340HepG2HNRNPL
GGCTENSG00000006625.13318.34730768.60770-1.2716017.1251015.74880HepG2HNRNPLL
GGCTENSG00000006625.13302.58050558.04960-0.883109.705108.42660HepG2IGF2BP1
GGCTENSG00000006625.13371.06230542.05540-0.546803.455702.70960HepG2IGF2BP2
GGCTENSG00000006625.13263.16570545.16210-1.050704.652103.32040HepG2KHSRP
GGCTENSG00000006625.13315.77050443.37550-0.489704.237602.98850HepG2KIF1C
GGCTENSG00000006625.13742.18760578.187800.360101.836301.31690HepG2MATR3
GGCTENSG00000006625.13345.92420591.82740-0.774706.092405.16870HepG2NCBP2
GGCTENSG00000006625.13320.99310596.60310-0.894204.803703.33910HepG2NONO
GGCTENSG00000006625.13366.93500527.15300-0.522703.148002.37990HepG2PABPC4
GGCTENSG00000006625.13287.46610483.65130-0.750604.462303.16200HepG2PCBP2
GGCTENSG00000006625.13210.67190399.17130-0.9220010.072808.73110HepG2PRPF4
GGCTENSG00000006625.13301.61050501.18120-0.732605.212004.13840HepG2PRPF8
GGCTENSG00000006625.13398.90340516.99280-0.374102.676702.13720HepG2PTBP1
GGCTENSG00000006625.13486.46330908.09710-0.9005011.0971010.01190HepG2PUF60
GGCTENSG00000006625.13787.87570963.99870-0.291103.022402.40850HepG2PUM1
GGCTENSG00000006625.13605.70470963.28610-0.669308.559807.40920HepG2PUM2
GGCTENSG00000006625.13332.88340494.03990-0.569605.641304.81770HepG2PUS1
GGCTENSG00000006625.13382.36630559.96580-0.550404.752003.96640HepG2QKI
GGCTENSG00000006625.13450.75110615.84040-0.450203.523702.56600HepG2RBM15
GGCTENSG00000006625.13425.32720827.28930-0.9598016.0797015.04110HepG2RBM22
GGCTENSG00000006625.13245.47250610.41800-1.3142017.7130016.27660HepG2RPLP0
GGCTENSG00000006625.13231.92070458.48780-0.983306.567405.15960HepG2RPS10
GGCTENSG00000006625.13222.05080385.10960-0.794406.260305.37670HepG2RPS19
GGCTENSG00000006625.13238.53450351.48110-0.559202.551001.78220HepG2RPS3A
GGCTENSG00000006625.13194.05680495.77100-1.3532013.4360011.92540HepG2RRP9
GGCTENSG00000006625.13284.96140386.48530-0.439602.374701.50060HepG2SERBP1
GGCTENSG00000006625.13393.12250760.76060-0.9525011.5013010.15530HepG2SF3B1
GGCTENSG00000006625.13623.21080870.75120-0.482506.264205.27640HepG2SLBP
GGCTENSG00000006625.13199.44940475.95460-1.2548011.399509.39550HepG2SMNDC1
GGCTENSG00000006625.13521.71110846.48280-0.698203.659402.75700HepG2SNRNP70
GGCTENSG00000006625.13424.35240934.38080-1.1387027.3734026.22020HepG2SRFBP1
GGCTENSG00000006625.13840.58930561.849600.581107.138906.46260HepG2SRSF1
GGCTENSG00000006625.13608.83280818.60720-0.427102.209501.32670HepG2SRSF3
GGCTENSG00000006625.13594.37470896.62980-0.593108.293107.28540HepG2SRSF5
GGCTENSG00000006625.13280.28530556.75660-0.9902013.9460012.59250HepG2SRSF7
GGCTENSG00000006625.13209.31720457.07980-1.1268016.0273014.89560HepG2SRSF9
GGCTENSG00000006625.13566.34900811.24260-0.518406.652005.92120HepG2SSB
GGCTENSG00000006625.13645.516401019.70130-0.6596011.8647010.72980HepG2SUCLG1
GGCTENSG00000006625.13279.48100646.76310-1.2105012.7655011.49090HepG2SUPV3L1
GGCTENSG00000006625.13718.37710504.964900.508505.052604.33230HepG2TAF15
GGCTENSG00000006625.13414.23960749.19690-0.854909.332108.11500HepG2TARDBP
GGCTENSG00000006625.13272.26310433.50090-0.671004.100102.91670HepG2TFIP11
GGCTENSG00000006625.13238.49480425.10610-0.833907.930307.16330HepG2TIAL1
GGCTENSG00000006625.13604.38620887.19440-0.553805.436704.16240HepG2TUFM
GGCTENSG00000006625.13568.47550939.09580-0.724206.030004.76470HepG2UBE2L3
GGCTENSG00000006625.13665.69040466.905200.511605.050104.28140HepG2UTP3
GGCTENSG00000006625.13197.85370314.81830-0.670103.385002.16420HepG2XPO5
GGCTENSG00000006625.13290.33830531.87720-0.8734012.7268011.77090HepG2ZNF622
GGCTENSG00000006625.132395.286202013.519100.250403.206002.60300K562AGGF1
GGCTENSG00000006625.131503.570002531.76520-0.7518011.4708010.39530K562AQR
GGCTENSG00000006625.132571.562002198.310900.226102.334901.50270K562ATP5C1
GGCTENSG00000006625.13449.81330652.33140-0.536304.178902.82510K562CCAR1
GGCTENSG00000006625.131707.104203696.57990-1.114604.017802.69620K562CNOT7
GGCTENSG00000006625.131856.847202383.81320-0.360402.695501.60380K562CPEB4
GGCTENSG00000006625.13918.332701134.41580-0.304902.760201.70590K562CSTF2
GGCTENSG00000006625.131042.008501311.06770-0.331403.923202.31490K562DDX27
GGCTENSG00000006625.132824.643302254.564700.325104.591303.42110K562DKC1
GGCTENSG00000006625.13800.720301133.95300-0.502004.106302.97740K562EFTUD2
GGCTENSG00000006625.131135.608001367.59760-0.268202.596901.82410K562EIF3G
GGCTENSG00000006625.13963.639601429.06680-0.568506.049104.84480K562EIF4A3
GGCTENSG00000006625.13978.221301247.45810-0.350803.314701.87290K562EWSR1
GGCTENSG00000006625.13831.866101136.85110-0.450603.272601.70390K562GEMIN5
GGCTENSG00000006625.131258.315601540.15160-0.291602.929501.75580K562GLRX3
GGCTENSG00000006625.131338.193801640.94810-0.294202.481701.46440K562HNRNPA1
GGCTENSG00000006625.13676.520501292.09800-0.9335015.8858014.53770K562HNRNPC
GGCTENSG00000006625.13917.675901153.75600-0.330302.471901.40380K562HNRNPF
GGCTENSG00000006625.131492.380001906.58120-0.353402.662301.45650K562HNRNPK
GGCTENSG00000006625.131771.926802229.05230-0.331103.206302.05910K562HNRNPL
GGCTENSG00000006625.13983.237001250.96500-0.347402.804601.40490K562LARP7
GGCTENSG00000006625.131340.464901799.16600-0.424609.193207.94180K562NSUN2
GGCTENSG00000006625.131441.017703551.30920-1.301304.670503.03420K562PABPC1
GGCTENSG00000006625.131427.996301785.04690-0.322002.717401.74660K562PCBP2
GGCTENSG00000006625.13896.287401158.47640-0.370202.314601.49350K562PSIP1
GGCTENSG00000006625.131633.736501949.16110-0.254702.143801.54710K562PTBP1
GGCTENSG00000006625.132755.310602077.851300.407003.563002.95840K562PUS1
GGCTENSG00000006625.131237.895301869.04450-0.594407.532206.05810K562RBM22
GGCTENSG00000006625.13785.200101056.84010-0.428603.907002.72750K562RCC2
GGCTENSG00000006625.131457.858301966.86290-0.432003.959902.62290K562NELFE
GGCTENSG00000006625.131522.411301775.29320-0.221702.096301.37990K562SF3A3
GGCTENSG00000006625.13678.629501001.86850-0.562003.392302.22810K562SRFBP1
GGCTENSG00000006625.131178.196401818.82400-0.6264011.649909.88980K562SRPK2
GGCTENSG00000006625.131334.284101910.82120-0.518106.960005.84820K562SRSF1
GGCTENSG00000006625.13673.381401068.55020-0.666205.933204.40320K562SUPV3L1
GGCTENSG00000006625.131147.010201933.88980-0.7536010.667809.12580K562TARDBP
GGCTENSG00000006625.131547.490701865.45140-0.269602.339701.59480K562TIA1
GGCTENSG00000006625.13622.406501114.27500-0.840209.703507.85700K562TIAL1
GGCTENSG00000006625.13774.691601183.63970-0.611506.904805.25180K562TRIM56
GGCTENSG00000006625.13826.488001130.84930-0.452303.437802.29550K562UCHL5
GGCTENSG00000006625.131374.008801907.69260-0.473408.854207.65820K562UPF1
GGCTENSG00000006625.131244.905801632.35440-0.390904.075003.00480K562WDR3
GGCTENSG00000006625.132140.244902852.10610-0.414304.584703.43190K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GGCT is not available on ENCORE database.





17 RBPs can affect the splicing of GGCT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGGCTENSG00000006625.13chr7-305401513054029730538418305385543054418430544460-0.267000.000000.00000excludedK562SRSF1
SEGGCTENSG00000006625.13chr7-3054015130540297305384183053855430544184305444600.155000.000030.00108includedK562SF3B4
SEGGCTENSG00000006625.13chr7-3054015130540297305362383053685130544184305444600.090000.004030.08920includedK562AKAP8L
SEGGCTENSG00000006625.13chr7-305401513054029730536238305368513054418430544460-0.149000.001130.08416excludedK562XRCC6
SEGGCTENSG00000006625.13chr7-3053735630537512305363993053685130538418305385540.087000.000000.00000includedHepG2HNRNPK
SEGGCTENSG00000006625.13chr7-305401513054029730538418305385543054418430544460-0.174000.002590.05735excludedHepG2HNRNPK
SEGGCTENSG00000006625.13chr7-305384183053855430536236305368513054015130540296-0.177000.000000.00003excludedHepG2U2AF2
SEGGCTENSG00000006625.13chr7-3054015130540297305384183053855430544184305444600.173000.000000.00008includedK562U2AF1
SEGGCTENSG00000006625.13chr7-305401513054029730538418305385543054418430544460-0.166000.000060.01391excludedK562HNRNPM
SEGGCTENSG00000006625.13chr7-305401513054029730538418305385543054418430544460-0.185000.000380.01150excludedHepG2SRSF1
SEGGCTENSG00000006625.13chr7-3054015130540297305384183053855430544184305444600.157000.001700.09393includedHepG2IGF2BP3
SEGGCTENSG00000006625.13chr7-3053735630537512305363993053685130538418305385540.075000.000260.02436includedHepG2TIAL1
SEGGCTENSG00000006625.13chr7-3054015130540297305384183053855430544184305444600.137000.000580.08402includedK562SRSF7
SEGGCTENSG00000006625.13chr7-305401513054029730538418305385543054418430544460-0.150000.000930.08320excludedHepG2TAF15
SEGGCTENSG00000006625.13chr7-3054015130540297305384183053855430544184305444600.159000.000010.00050includedK562U2AF2
SEGGCTENSG00000006625.13chr7-3054015130540297305384183053855430544184305444600.102000.002480.07483includedK562TARDBP
SEGGCTENSG00000006625.13chr7-3053735630537512305363993053685130538418305385540.070000.000000.00000includedK562HNRNPK
SEGGCTENSG00000006625.13chr7-305401513054029730538418305385543054418430544460-0.116000.001480.06009excludedK562HNRNPK
SEGGCTENSG00000006625.13chr7-305401513054029730538418305385543054418430544460-0.196000.000360.07287excludedHepG2FUS
SEGGCTENSG00000006625.13chr7-305384183053855430536236305368513054418430544417-0.075000.004670.06583excludedK562HNRNPC
A3SSGGCTENSG00000006625.13chr7-3053841830538619305384183053855430544184305444170.062000.001050.00724longerK562AQR
MXEGGCTENSG00000006625.13chr7-30540151305402973056392730564102305384183053855430590251305903970.256000.000000.000001includedHepG2SSB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GGCT is not avaliable on ENCORE database.