Experiment Information (Status: Released)

RBP	KHSRP
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	34

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
KHSRP-1300	RBNS	20-20	1300	KHSRP_1300.fastq.gz
KHSRP-20	RBNS	20-20	20	KHSRP_20.fastq.gz
KHSRP-320	RBNS	20-20	320	KHSRP_320.fastq.gz
KHSRP-5	RBNS	20-20	5	KHSRP_5.fastq.gz
KHSRP-80	RBNS	20-20	80	KHSRP_80.fastq.gz
KHSRP-input	CN	20-20	0	KHSRP_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:KHSRP	ENCSR915BDY	experiment	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-12	ENCODE3			8051
chris-burge:KHSRP_PABPN1L-input-cntl	ENCSR978BSJ	experiment	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-12	ENCODE3			8052
chris-burge:lib-KHSRP-1	ENCLB712RHP	library	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-12	ENCODE3			8327
chris-burge:lib-KHSRP-2	ENCLB113XJF	library	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-12	ENCODE3			8328
chris-burge:lib-KHSRP-3	ENCLB919OUI	library	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-12	ENCODE3			8329
chris-burge:lib-KHSRP-4	ENCLB872WZA	library	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-12	ENCODE3			8330
chris-burge:lib-KHSRP-5	ENCLB312WTN	library	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-12	ENCODE3			8331
chris-burge:lib-KHSRP-input-cntl	ENCLB943BOF	library	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-12	ENCODE3			8332
chris-burge:KHSRP_1300.fastq.gz	ENCFF641RTT	file_fastq	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			8757
chris-burge:KHSRP_20.fastq.gz	ENCFF778ABV	file_fastq	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			8758
chris-burge:KHSRP_320.fastq.gz	ENCFF608BCN	file_fastq	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			8759
chris-burge:KHSRP_5.fastq.gz	ENCFF385FOT	file_fastq	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			8760
chris-burge:KHSRP_80.fastq.gz	ENCFF487JGC	file_fastq	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			8761
chris-burge:KHSRP_input.fastq.gz	ENCFF670GMS	file_fastq	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			8762
chris-burge:KHSRP_enrichment_R.4mers.txt	ENCFF924TSO	file_enrichment	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9212
chris-burge:KHSRP_enrichment_R.5mers.txt	ENCFF865YVO	file_enrichment	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9213
chris-burge:KHSRP_enrichment_R.6mers.txt	ENCFF356DWW	file_enrichment	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9214
chris-burge:KHSRP_enrichment_R.7mers.txt	ENCFF757NUT	file_enrichment	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9215
chris-burge:KHSRP_est_binding_frac.4mers.ordered_by_enrichment.txt	ENCFF931GAS	file_library-fraction	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9216
chris-burge:KHSRP_est_binding_frac.5mers.ordered_by_enrichment.txt	ENCFF402TCU	file_library-fraction	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9217
chris-burge:KHSRP_est_binding_frac.6mers.ordered_by_enrichment.txt	ENCFF708KEI	file_library-fraction	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9218
chris-burge:KHSRP_est_binding_frac.7mers.ordered_by_enrichment.txt	ENCFF739ZKH	file_library-fraction	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9219
chris-burge:HepG2.with_motif.KHSRP.bed.gz	ENCFF464UVC	file_bed	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9730
chris-burge:K562.with_motif.KHSRP.bed.gz	ENCFF712ZAK	file_bed	RNA Bind-n-Seq	KHSRP		Yes	Released	2022-07-14	ENCODE3			9731

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
KHSRP.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
KHSRP_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHSRP_input.fastq.gz	ENCODE3
KHSRP_20.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHSRP_input.fastq.gz	ENCODE3
KHSRP_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHSRP_input.fastq.gz	ENCODE3
KHSRP_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHSRP_input.fastq.gz	ENCODE3
KHSRP_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHSRP_input.fastq.gz	ENCODE3
KHSRP_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
KHSRP_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHSRP_1300.fastq.gz,KHSRP_20.fastq.gz,KHSRP_320.fastq.gz,KHSRP_5.fastq.gz,KHSRP_80.fastq.gz,KHSRP_input.fastq.gz		ENCODE3
KHSRP_est_binding_frac.4mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHSRP_1300.fastq.gz,KHSRP_20.fastq.gz,KHSRP_320.fastq.gz,KHSRP_5.fastq.gz,KHSRP_80.fastq.gz,KHSRP_input.fastq.gz		ENCODE3
KHSRP_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHSRP_1300.fastq.gz,KHSRP_20.fastq.gz,KHSRP_320.fastq.gz,KHSRP_5.fastq.gz,KHSRP_80.fastq.gz,KHSRP_input.fastq.gz		ENCODE3
KHSRP_est_binding_frac.5mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHSRP_1300.fastq.gz,KHSRP_20.fastq.gz,KHSRP_320.fastq.gz,KHSRP_5.fastq.gz,KHSRP_80.fastq.gz,KHSRP_input.fastq.gz		ENCODE3
KHSRP_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHSRP_1300.fastq.gz,KHSRP_20.fastq.gz,KHSRP_320.fastq.gz,KHSRP_5.fastq.gz,KHSRP_80.fastq.gz,KHSRP_input.fastq.gz		ENCODE3
KHSRP_est_binding_frac.6mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHSRP_1300.fastq.gz,KHSRP_20.fastq.gz,KHSRP_320.fastq.gz,KHSRP_5.fastq.gz,KHSRP_80.fastq.gz,KHSRP_input.fastq.gz		ENCODE3
KHSRP_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHSRP_1300.fastq.gz,KHSRP_20.fastq.gz,KHSRP_320.fastq.gz,KHSRP_5.fastq.gz,KHSRP_80.fastq.gz,KHSRP_input.fastq.gz		ENCODE3
KHSRP_est_binding_frac.7mers.ordered_by_enrichment.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHSRP_1300.fastq.gz,KHSRP_20.fastq.gz,KHSRP_320.fastq.gz,KHSRP_5.fastq.gz,KHSRP_80.fastq.gz,KHSRP_input.fastq.gz		ENCODE3
HepG2.with_motif.KHSRP.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	KHSRP_enrichment_R.5mers.txt,755.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3
K562.with_motif.KHSRP.bed.gz	bed_RBNS	peaks	RNA Bind-n-Seq	Burge Lab	KHSRP_enrichment_R.5mers.txt,439.01v02.IDR.out.0102merged.bed.blacklist_removed.bed.narrowPeak.encode.bed.gz		ENCODE3