SNX2

General Information

Gene Name       : SNX2
Gene ID             : ENSG00000205302.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SNX2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SNX2ENSG00000205302.652.9346.7149.82ENCSR000AEF
HepG2SNX2ENSG00000205302.627.9142.9335.42ENCSR985KAT
K562SNX2ENSG00000205302.636.3139.1037.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SNX2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SNX2 RNA is bound by 14 proteins.  







eCLIP assay for SNX2 is not avaliable on ENCORE database.





14 proteins are bound to SNX2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr5122165345122165422+3'-UTR5.9534810.21115HepG2SUB1
chr5122165505122165600+3'-UTR4.812417.41855HepG2HNRNPL
chr5122165512122165589+3'-UTR7.0876836.76087K562HNRNPL
chr5122165446122165512+3'-UTR5.5887425.20658K562HNRNPL
chr5122165351122165400+3'-UTR3.799287.22820K562YBX3
chr5122165444122165505+3'-UTR5.510259.00031HepG2HNRNPL
chr5122152543122152615+3'-UTR,CDS,intron-Proximal4.4766810.20178K562SF3B4
chr5122165292122165358+3'-UTR,CDS,intron-Proximal4.367438.15024HepG2BCLAF1
chr5122165358122165422+3'-UTR3.241306.19339HepG2BCLAF1
chr5122165509122165605+3'-UTR4.4662936.65851K562AGGF1
chr5122165735122165789+3'-UTR4.459017.87748K562PUM2
chr5122144042122144100+3'-UTR,CDS,intron-Proximal3.631914.93120K562KHSRP
chr5122110963122111056+5'-UTR,intron-Distal,intron-Proximal4.642105.89791K562RBM15
chr5122111284122111333+5'-UTR,intron-Distal,intron-Proximal3.401373.54074K562RBM15
chr5122130964122131051+5'-UTR,CDS4.303565.13243HepG2GRWD1
chr5122110829122110924+5'-UTR,CDS,intron-Proximal3.482214.08845K562SRSF1
chr5122131004122131079+5'-UTR,CDS,intron-Proximal3.133944.74766HepG2BCLAF1
chr5122110855122110937+5'-UTR,CDS,intron-Proximal3.532893.54074K562RBM15
chr5122154676122154715+CDS3.665304.46864HepG2BCLAF1
chr5122154466122154543+CDS,intron-Proximal3.867006.39986K562SF3B4
chr5122152976122153076+CDS,intron-Proximal3.141605.04030K562GRWD1
chr5122161795122161847+CDS3.241304.74886HepG2BCLAF1
chr5122154512122154550+CDS,intron-Proximal3.752114.79276K562ZNF622
chr5122154512122154532+CDS,intron-Proximal4.665304.78529HepG2BCLAF1
chr5122163283122163336+CDS4.461597.53358HepG2BCLAF1
chr5122131462122131608+intron-Distal3.023203.96958K562KHSRP
chr5122125192122125284+intron-Distal4.157224.50052K562HNRNPL
chr5122148529122148628+intron-Distal3.009273.55116K562KHSRP
chr5122134907122135014+intron-Distal5.822338.73280K562QKI
chr5122134899122135011+intron-Distal4.893004.51735HepG2QKI
chr5122125331122125387+intron-Distal4.067543.80954K562HNRNPL
chr5122125198122125241+intron-Distal4.199666.49116K562AGGF1
chr5122148784122148893+intron-Distal3.245814.82148HepG2PTBP1
chr5122125241122125305+intron-Distal4.930846.53047K562AGGF1
chr5122148102122148175+intron-Distal3.638835.32632HepG2QKI
chr5122124938122125037+intron-Distal4.218834.89313K562HNRNPL
chr5122139400122139553+intron-Distal,intron-Proximal3.781255.56048K562KHSRP
chr5122148795122148898+intron-Distal4.054056.11515K562PTBP1
chr5122125089122125173+intron-Distal3.478703.02891HepG2HNRNPL
chr5122148032122148086+intron-Distal3.370803.94088HepG2QKI
chr5122144100122144192+intron-Distal,intron-Proximal5.315688.94695K562KHSRP
chr5122117035122117165+intron-Distal4.562554.96658K562KHSRP
chr5122148175122148255+intron-Distal4.318463.50357HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SNX2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SNX2 is not available on ENCORE database.

  • 74 RBPs can affect the levels of SNX2.  








The Knockdown/knockout RNA-Seq assay for SNX2 is not available on ENCORE database.





74 RBPs can affect the gene expression of SNX2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SNX2ENSG00000205302.2573.02630947.98690-0.726305.738704.36810HepG2BCCIP
SNX2ENSG00000205302.2608.31400823.77070-0.437402.335901.51210HepG2BCLAF1
SNX2ENSG00000205302.21054.863101241.94580-0.235501.872101.32450HepG2CELF1
SNX2ENSG00000205302.21150.661101335.28730-0.214702.059601.40660HepG2DAZAP1
SNX2ENSG00000205302.21003.34980836.259000.262702.675401.85400HepG2DDX19B
SNX2ENSG00000205302.21004.99710787.207900.352302.699001.79880HepG2DDX24
SNX2ENSG00000205302.2657.10680932.04500-0.504303.043302.23820HepG2DDX55
SNX2ENSG00000205302.21094.944701413.34130-0.368302.259501.69580HepG2DDX6
SNX2ENSG00000205302.21017.18700865.091100.233601.891801.31490HepG2DKC1
SNX2ENSG00000205302.2560.54980781.91010-0.480205.456104.58590HepG2DNAJC2
SNX2ENSG00000205302.2999.588201358.94660-0.443103.344602.69700HepG2EIF2S1
SNX2ENSG00000205302.2507.75760899.77360-0.8254010.644308.55550HepG2EIF2S2
SNX2ENSG00000205302.21170.434101501.92500-0.359802.172601.60320HepG2EIF4A3
SNX2ENSG00000205302.21013.771801462.08800-0.528303.363302.60840HepG2EIF4B
SNX2ENSG00000205302.21427.636401869.34590-0.388905.899705.07680HepG2ETF1
SNX2ENSG00000205302.21155.317401514.98810-0.391002.875502.16970HepG2FXR1
SNX2ENSG00000205302.21099.760001405.57950-0.354002.214801.61650HepG2G3BP1
SNX2ENSG00000205302.2455.32570796.54500-0.806909.271808.19000HepG2HNRNPA1
SNX2ENSG00000205302.21087.883701422.79600-0.387203.048202.31630HepG2HNRNPK
SNX2ENSG00000205302.2858.635201437.00580-0.742906.424504.82960HepG2KHSRP
SNX2ENSG00000205302.2696.95160907.42750-0.380702.617101.44170HepG2LIN28B
SNX2ENSG00000205302.21115.637201515.51530-0.441903.390802.66400HepG2MAGOH
SNX2ENSG00000205302.21953.908901524.061100.358302.364601.77800HepG2MATR3
SNX2ENSG00000205302.21063.563001560.01300-0.552704.331003.54550HepG2NCBP2
SNX2ENSG00000205302.2981.413301324.07400-0.432104.887503.87870HepG2NOL12
SNX2ENSG00000205302.21583.588801235.232000.358302.093101.43840HepG2NSUN2
SNX2ENSG00000205302.21253.306401474.87710-0.234902.333601.76640HepG2PCBP1
SNX2ENSG00000205302.21207.119601025.006300.235802.040601.36870HepG2PRPF4
SNX2ENSG00000205302.21569.93230996.906000.655104.490202.96230HepG2PRPF6
SNX2ENSG00000205302.21078.509801500.75500-0.476607.323106.51640HepG2PTBP1
SNX2ENSG00000205302.2978.517101263.97480-0.369303.026702.40830HepG2PUF60
SNX2ENSG00000205302.21303.535601670.18590-0.357604.739104.06550HepG2NELFE
SNX2ENSG00000205302.21240.089801555.56990-0.327004.061003.33330HepG2RECQL
SNX2ENSG00000205302.21488.325401095.039900.442604.224803.40840HepG2RPLP0
SNX2ENSG00000205302.2871.38550639.818700.445503.734403.03130HepG2RPS19
SNX2ENSG00000205302.2653.44410783.80520-0.262402.188501.60400HepG2SAFB2
SNX2ENSG00000205302.21308.445401562.45740-0.256002.713702.12730HepG2SF3B4
SNX2ENSG00000205302.2703.62670914.08580-0.377503.823803.08760HepG2SMN1
SNX2ENSG00000205302.22158.827001534.391500.492502.882202.08410HepG2SNRNP70
SNX2ENSG00000205302.22242.062201630.876300.459109.178508.42920HepG2SRSF1
SNX2ENSG00000205302.21989.310901532.206100.376606.311005.59390HepG2SSB
SNX2ENSG00000205302.21217.598401465.92050-0.267802.541902.00190HepG2TAF15
SNX2ENSG00000205302.21091.66970855.336200.351903.116102.59070HepG2TIAL1
SNX2ENSG00000205302.2628.78160862.83470-0.456504.941304.23170HepG2TRIM56
SNX2ENSG00000205302.21337.754801011.555700.403105.836004.91580HepG2ZC3H8
SNX2ENSG00000205302.22692.588002025.111700.410908.080607.18150K562AGGF1
SNX2ENSG00000205302.22756.335602225.323800.308602.821001.82680K562AKAP8
SNX2ENSG00000205302.22011.391102421.12030-0.267501.990601.47780K562AQR
SNX2ENSG00000205302.22792.020802211.004800.336504.690203.46530K562ATP5C1
SNX2ENSG00000205302.21000.276501370.37200-0.454205.929703.88880K562BCCIP
SNX2ENSG00000205302.21742.414902120.26320-0.283203.299102.08420K562CPEB4
SNX2ENSG00000205302.24038.808603449.499800.227402.251801.37170K562CELF1
SNX2ENSG00000205302.23234.158202376.011000.444704.902102.92080K562DDX19B
SNX2ENSG00000205302.22704.326202267.479200.254103.103402.16810K562DKC1
SNX2ENSG00000205302.2892.629301544.96450-0.7914017.6088016.02200K562EIF2S2
SNX2ENSG00000205302.2760.065501159.40980-0.609204.989103.54980K562EIF3D
SNX2ENSG00000205302.21163.889001457.80430-0.324802.060701.34900K562EIF4A3
SNX2ENSG00000205302.21414.523602012.55000-0.508702.969102.08190K562FMR1
SNX2ENSG00000205302.21236.284501516.05930-0.294303.021802.39300K562FXR1
SNX2ENSG00000205302.22324.338401650.163900.494103.530902.71080K562G3BP2
SNX2ENSG00000205302.21679.194602058.87320-0.294102.545901.81830K562GRSF1
SNX2ENSG00000205302.21328.826201638.46240-0.302202.712201.65030K562HNRNPA1
SNX2ENSG00000205302.2585.34760902.10090-0.624006.610004.75920K562HNRNPF
SNX2ENSG00000205302.23246.141002236.268400.537506.014404.69310K562KIF1C
SNX2ENSG00000205302.21530.261001981.45280-0.372803.712102.72880K562MAGOH
SNX2ENSG00000205302.21623.443701977.53530-0.284602.517701.64090K562MATR3
SNX2ENSG00000205302.21282.951201478.09490-0.204302.043901.34380K562MTPAP
SNX2ENSG00000205302.22698.905201755.958700.620003.113302.16940K562NAA15
SNX2ENSG00000205302.21330.517601763.12510-0.406102.928501.92310K562PCBP2
SNX2ENSG00000205302.22055.778101624.312700.339802.441801.66230K562PCBP3
SNX2ENSG00000205302.21484.623101245.916600.252802.100101.40260K562POLR2G
SNX2ENSG00000205302.21491.503901925.05530-0.368103.867503.09440K562PTBP1
SNX2ENSG00000205302.22754.131803190.01560-0.212002.223901.36060K562PUM2
SNX2ENSG00000205302.23540.088702089.736100.7604012.5940011.48120K562PUS1
SNX2ENSG00000205302.22786.137602036.179700.452307.581706.63010K562RBM15
SNX2ENSG00000205302.21265.297301846.26550-0.545106.435605.08290K562RBM22
SNX2ENSG00000205302.21374.250201799.47540-0.388903.172301.65120K562RBM34
SNX2ENSG00000205302.21355.366901073.349300.336502.078101.37460K562RPS19
SNX2ENSG00000205302.21361.760101770.95080-0.379102.945001.90960K562RPS3
SNX2ENSG00000205302.21607.685501077.403500.577304.304602.64260K562RRP9
SNX2ENSG00000205302.21258.955101660.20160-0.399106.534605.16680K562SRPK2
SNX2ENSG00000205302.21761.296001418.170000.312503.208201.57110K562SRSF9
SNX2ENSG00000205302.21665.834001326.352700.328703.658002.15830K562SSB
SNX2ENSG00000205302.21302.253401910.05170-0.552606.097905.01680K562TARDBP
SNX2ENSG00000205302.21547.025001842.41780-0.252102.108201.40090K562TIA1
SNX2ENSG00000205302.21512.080202205.22710-0.544404.933403.33030K562UTP3
SNX2ENSG00000205302.21991.972101549.468000.362306.238605.02140K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SNX2 is not available on ENCORE database.





12 RBPs can affect the splicing of SNX2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESNX2ENSG00000205302.2chr5+122163073122163154122161744122161888122163269122163341-0.102000.000000.00000excludedK562AQR
SESNX2ENSG00000205302.2chr5+122151566122151666122143839122144050122152609122152723-0.069000.000050.00095excludedK562AQR
A3SSSNX2ENSG00000205302.2chr5+1221529501221530681221529741221530681221526091221527230.069000.000000.00000longerK562AQR
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.115000.000000.000521includedK562LIN28B
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.114000.000000.000271includedK562LARP7
MXESNX2ENSG00000205302.2chr5+122130960122131078122135386122135550122110690122110906122137563122137630-0.096000.000100.027262includedK562SMNDC1
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.169000.000000.000161includedHepG2XRN2
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.191000.000000.000001includedHepG2DDX55
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.109000.000000.001031includedK562PHF6
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.101000.000050.001941includedK562HNRNPC
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.118000.000880.033181includedHepG2SUPV3L1
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.089000.000570.075221includedK562LSM11
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.117000.000350.043531includedK562EWSR1
MXESNX2ENSG00000205302.2chr5+1221309601221310781221353861221355501221106901221109061221375631221376300.089000.001560.027551includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SNX2 is not avaliable on ENCORE database.