RBM4

General Information

Gene Name       : RBM4
Gene ID             : ENSG00000173933.20
Essential Gene : No

Functions

Localization(RBPImage: RBM4)

Domains (AlphaFold: RBM4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RBM4ENSG00000173933.2072.4082.4077.40ENCSR000AEF
HepG2RBM4ENSG00000173933.20155.56107.90131.73ENCSR985KAT
K562RBM4ENSG00000173933.2083.1082.1682.63ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: RBM4ENCSR331BKRRBM4cell-free sampleReleasedENCSR990LWK  






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RBM4K562shRNABGKLV13-29,BGKLV13-30BGKLV13-1,BGKLV13-2NotSatisfiedENCODE3
RBM4K562shRNABGKLV34-29,BGKLV34-30BGKLV34-1,BGKLV34-2NotSatisfiedENCODE3
RBM4HepG2shRNABGHLV26-41,BGHLV26-42BGHLV26-1,BGHLV26-2redo transfection,redo transfectionNotSatisfiedENCODE3
RBM4HepG2shRNABGHLV33-25,BGHLV33-26BGHLV33-1,BGHLV33-2NotSatisfiedENCODE3
RBM4Ribo-STAMP-293TshRNABGRSLV01-13,BGRSLV01-14BGRSLV01-1,BGRSLV01-2NotSatisfiedENCORE2
RBM4Ribo-STAMP-293TshRNABGRSLV02-15,BGRSLV02-16BGRSLV02-1,BGRSLV02-2NotSatisfiedENCORE2
RBM4293TshRNABG293LV01-53,BG293LV01-54BG293LV01-1,BG293LV01-2NotSatisfiedENCORE2
RBM4293TshRNABG293LV01-55,BG293LV01-56BG293LV01-1,BG293LV01-2NotSatisfiedENCORE2
RBM4293TshRNABG293LV01-57,BG293LV01-58BG293LV01-1,BG293LV01-2NotSatisfiedENCORE2
RBM4293TshRNARBM4-BG293LV04-55,RBM4-BG293LV04-56NT-BG293LV04-1,NT-BG293LV04-2,SubmittingENCORE2
RBM4293TshRNABG293LV04-57,BG293LV04-58BG293LV04-1,BG293LV04-2NotSatisfiedENCORE2
RBM4293TshRNABG293LV04-59,BG293LV04-60BG293LV04-1,BG293LV04-2NotSatisfiedENCORE2
RBM4293TshRNARBM4-BG293LV06-47,RBM4-BG293LV06-48NT-BG293LV06-1,NT-BG293LV06-2,SequencedENCORE2


  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
RBM4RBM4ReleasedENCODE3


  Localization Image in HepG2  
    RBM4: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Cytoplasm
  • Compartment/Organelle
  • P bodies
  • Unknown Cyto Foci
  • Cytosolic
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








    RNA Targets

    • eCLIP assay for RBM4 is not avaliable on ENCORE database.


    • The binding motifs of RBM4

      • Trulli

    Proteins bound to RNA
    • RBM4 RNA is bound by 74 proteins.  







    eCLIP assay for RBM4 is not avaliable on ENCORE database.





    74 proteins are bound to RBM4 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr116641364266413769+3'-UTR,intron-Distal3.341077.65467K562MATR3
    chr116640718066407232+3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.760349.63482HepG2GRWD1
    chr116641366866413759+3'-UTR,intron-Distal4.066969.82135K562TIA1
    chr116640830066408353+3'-UTR,intron-Distal4.6757717.06621K562HNRNPM
    chr116641386166413922+3'-UTR,intron-Distal,polyA_signal5.2450717.53659K562PABPC4
    chr116641362866413728+3'-UTR,intron-Distal3.3123117.04603K562PCBP1
    chr116641202666412102+3'-UTR,intron-Distal,intron-Proximal3.882714.90204K562TARDBP
    chr116641163766411680+3'-UTR,intron-Distal,intron-Proximal3.334663.76553K562PRPF8
    chr116641364466413756+3'-UTR,intron-Distal4.79014400.00000K562PTBP1
    chr116640830066408365+3'-UTR,intron-Distal4.249409.52427HepG2HNRNPM
    chr116641363566413755+3'-UTR,intron-Distal4.2260161.29734HepG2PTBP1
    chr116641160966411683+3'-UTR,intron-Distal,intron-Proximal4.514316.48405K562AQR
    chr116640709366407153+5'-UTR,intron-Distal,intron-Proximal3.233064.35650K562KHSRP
    chr116638419466384296+5'-UTR,CDS3.824667.91271HepG2UCHL5
    chr116638425066384276+5'-UTR,CDS4.9783316.21562HepG2GRWD1
    chr116638410266384134+5'-UTR4.423239.87361K562RBM15
    chr116640641566406478+5'-UTR,intron-Distal,intron-Proximal4.1901812.51026K562NONO
    chr116638431966384350+5'-UTR,CDS3.8684512.74560K562RBM15
    chr116638430366384353+5'-UTR,CDS3.606228.81638K562GEMIN5
    chr116638414666384186+5'-UTR5.5083238.09908K562RBM15
    chr116638410066384190+5'-UTR4.231848.87597HepG2SRSF9
    chr116638412566384190+5'-UTR3.015597.10182HepG2GRWD1
    chr116638451766384566+5'-UTR,CDS,intron-Proximal3.116984.18590HepG2RBM15
    chr116640643166406470+5'-UTR,intron-Distal,intron-Proximal4.466149.39636K562TIA1
    chr116638425966384283+5'-UTR,CDS6.4132658.56692K562RBM15
    chr116638423266384276+5'-UTR,CDS3.3640111.91719K562GEMIN5
    chr116638430366384319+5'-UTR,CDS3.502289.36564K562RBM15
    chr116638410266384202+5'-UTR,CDS3.4126719.83935K562DDX3X
    chr116638413466384138+5'-UTR5.3711831.11224K562RBM15
    chr116638442966384520+5'-UTR,CDS5.4640236.41653K562RBM15
    chr116640612166406141+5'-UTR,intron-Distal3.586303.31456K562TIA1
    chr116640657866406629+5'-UTR,intron-Distal5.239168.33684K562NONO
    chr116640627966406350+5'-UTR,intron-Distal,intron-Proximal3.5332211.80888K562NONO
    chr116638442466384529+5'-UTR,CDS,intron-Proximal3.503275.19933HepG2ZNF800
    chr116638427666384299+5'-UTR,CDS3.792659.25963HepG2GRWD1
    chr116638414866384195+5'-UTR,CDS3.5668720.50902HepG2NCBP2
    chr116640704466407093+5'-UTR,intron-Distal,intron-Proximal4.038093.90026K562KHSRP
    chr116640630966406346+5'-UTR,intron-Distal,intron-Proximal3.292293.10946HepG2SFPQ
    chr116638452666384544+5'-UTR,CDS,intron-Proximal4.371756.78984HepG2AQR
    chr116638419066384250+5'-UTR,CDS4.6255617.13166HepG2GRWD1
    chr116638429266384298+5'-UTR,CDS4.3900118.72287K562RBM15
    chr116640651066406542+5'-UTR,intron-Distal3.970866.84078K562NONO
    chr116638445166384527+5'-UTR,CDS3.652674.96115HepG2SRSF1
    chr116638450366384571+5'-UTR,CDS,intron-Proximal3.886687.32634HepG2PRPF4
    chr116638410166384191+5'-UTR3.199946.91457HepG2SRSF1
    chr116638435066384397+5'-UTR,CDS3.790563.41051HepG2SRSF1
    chr116640627366406357+5'-UTR,intron-Distal,intron-Proximal3.197354.38238K562CSTF2T
    chr116640628066406333+5'-UTR,intron-Distal,intron-Proximal3.959253.27829HepG2MATR3
    chr116640666266406698+5'-UTR,intron-Distal4.467645.23751K562TIA1
    chr116638425566384259+5'-UTR,CDS6.2427450.00583K562RBM15
    chr116638410066384148+5'-UTR3.4237727.35254HepG2NCBP2
    chr116638451766384581+5'-UTR,CDS,intron-Proximal3.8982120.55727HepG2PRPF8
    chr116638435066384412+5'-UTR,CDS4.9440427.64154K562RBM15
    chr116638428366384292+5'-UTR,CDS6.1687049.29371K562RBM15
    chr116640652966406549+5'-UTR,intron-Distal3.064343.54602K562TIA1
    chr116640616766406211+5'-UTR,intron-Distal3.185964.75208K562DDX3X
    chr116640636366406381+5'-UTR,intron-Distal,intron-Proximal4.110263.98553K562NONO
    chr116640666166406690+5'-UTR,intron-Distal3.556004.94042K562NONO
    chr116638442766384506+5'-UTR,CDS4.0692714.19821HepG2RBM15
    chr116640622066406321+5'-UTR,intron-Distal,intron-Proximal3.255156.65588K562AQR
    chr116640626566406317+5'-UTR,intron-Distal,intron-Proximal3.997563.33944K562MATR3
    chr116638452666384540+5'-UTR,CDS,intron-Proximal3.257377.13900K562AQR
    chr116638430266384351+5'-UTR,CDS3.138484.69671HepG2PPIG
    chr116641133766411388+3'-UTR,CDS,intron-Distal4.420536.70275K562RBM15
    chr116640758966407634+3'-UTR,CDS,intron-Distal,intron-Proximal3.282514.50819HepG2AQR
    chr116640749766407619+3'-UTR,CDS,intron-Distal,intron-Proximal3.6287210.12719K562GRWD1
    chr116641094766410986+3'-UTR,CDS,intron-Distal3.679844.22460K562RBM15
    chr116640750166407632+3'-UTR,CDS,intron-Distal,intron-Proximal3.0221210.68933HepG2GRWD1
    chr116640751766407599+3'-UTR,CDS,intron-Distal,intron-Proximal3.9175016.00088K562UCHL5
    chr116640735466407427+3'-UTR,CDS,intron-Distal3.410259.66045K562GRWD1
    chr116640761466407633+CDS,intron-Distal,intron-Proximal3.712116.19583K562RBM15
    chr116640745366407476+3'-UTR,CDS,intron-Distal3.950083.12746HepG2GRWD1
    chr116640752566407584+3'-UTR,CDS,intron-Distal3.022747.32857HepG2PRPF8
    chr116640734166407437+3'-UTR,CDS,intron-Distal4.2910711.11870HepG2BCLAF1
    chr116640718866407238+CDS,intron-Distal,intron-Proximal3.950307.45042K562UCHL5
    chr116640758466407649+3'-UTR,CDS,intron-Distal,intron-Proximal4.8405420.65070HepG2PRPF8
    chr116640754766407633+3'-UTR,CDS,intron-Distal,intron-Proximal3.556037.99874HepG2BUD13
    chr116640735466407470+3'-UTR,CDS,intron-Distal4.4481124.78805K562UCHL5
    chr116640735366407431+3'-UTR,CDS,intron-Distal4.9335013.54849HepG2GRWD1
    chr116640749366407625+3'-UTR,CDS,intron-Distal,intron-Proximal3.2154023.26336K562ZNF622
    chr116640738966407397+3'-UTR,CDS,intron-Distal3.310845.89284K562RBM15
    chr116640735066407475+3'-UTR,CDS,intron-Distal3.2988423.31932K562ZNF622
    chr116640753466407564+3'-UTR,CDS,intron-Distal3.475154.51666K562RBM15
    chr116640086866400974+intron-Distal3.9220517.13151HepG2ILF3
    chr116638461866384710+intron-Distal,intron-Proximal3.611645.17868HepG2FKBP4
    chr116639378966393798+intron-Distal3.353616.11092K562TIA1
    chr116640388166403913+intron-Distal4.204593.31709K562ILF3
    chr116639038966390466+intron-Distal3.230607.79220K562HNRNPM
    chr116638605066386120+intron-Distal,intron-Proximal3.4160210.20023K562EXOSC5
    chr116639152966391618+intron-Distal,intron-Proximal3.749059.98687K562FUS
    chr116639202266392144+3'-UTR,CDS,intron-Distal3.8654723.67809K562NONO
    chr116639451266394608+3'-UTR,intron-Distal3.6853110.75028HepG2PABPN1
    chr116638473366384812+intron-Distal3.437204.39228K562EFTUD2
    chr116639420766394222+3'-UTR,intron-Distal3.430568.88089K562YBX3
    chr116639420266394244+3'-UTR,intron-Distal3.955394.37227K562FUS
    chr116638466066384703+intron-Distal,intron-Proximal3.605204.69648HepG2PCBP2
    chr116639279066392831+CDS,intron-Distal3.422284.32871K562AKAP8L
    chr116638621966386320+intron-Distal3.3362712.44755K562HNRNPM
    chr116639308566393138+CDS,intron-Distal3.4437410.23102K562GEMIN5
    chr116640569366405760+intron-Distal4.5875517.47912K562NONO
    chr116638465166384711+intron-Distal,intron-Proximal4.3101220.57187HepG2PRPF4
    chr116639455966394602+3'-UTR,intron-Distal4.3656517.59912K562NONO
    chr116641444666414476+intron-Distal3.685053.04224HepG2SUGP2
    chr116640539366405454+intron-Distal3.507135.94173HepG2CSTF2
    chr116638471766384803+intron-Distal6.1053517.10795K562NONO
    chr116638460066384700+intron-Distal,intron-Proximal5.3169935.29801K562RBM15
    chr116638479466384848+intron-Distal3.668145.82826HepG2PRPF4
    chr116641842566418491+intron-Distal3.641543.24593HepG2XPO5
    chr116639161666391661+intron-Distal,intron-Proximal4.161585.22351HepG2RBM5
    chr116639456466394596+3'-UTR,intron-Distal3.528677.20321K562LSM11
    chr116639423566394288+3'-UTR,intron-Distal3.6447018.96345K562NONO
    chr116638658466386637+intron-Distal3.010455.68288K562HNRNPM
    chr116638463666384701+intron-Distal,intron-Proximal4.8168022.66674K562NONO
    chr116641394466414037+intron-Distal4.383955.66445K562FMR1
    chr116641394466414039+intron-Distal3.426739.43761K562CSTF2T
    chr116640070666400759+intron-Distal3.877547.93349HepG2ILF3
    chr116639154466391628+intron-Distal,intron-Proximal4.0708018.34422K562HNRNPM
    chr116639331466393380+intron-Distal4.1702310.05499K562DDX52
    chr116639197366391989+3'-UTR,CDS,intron-Distal4.3374015.01754K562RBM15
    chr116639384366393938+CDS,intron-Distal,intron-Proximal3.563666.90277K562HNRNPK
    chr116640565966405739+intron-Distal4.468999.15743K562EWSR1
    chr116639289166392975+CDS,intron-Distal4.3901610.12963K562HNRNPK
    chr116638489866384939+intron-Distal3.237715.17701K562NONO
    chr116639585166395899+intron-Distal4.116853.46884K562DGCR8
    chr116638971566389781+intron-Distal4.138015.16744K562HNRNPC
    chr116639370566393813+intron-Distal3.531769.60736K562EWSR1
    chr116640599866406050+intron-Distal,intron-Proximal4.199578.40406K562NONO
    chr116640568966405754+intron-Distal3.133776.38416HepG2FAM120A
    chr116640962766409665+intron-Distal3.224213.34056HepG2MATR3
    chr116638473166384794+intron-Distal3.295404.32871K562AKAP8L
    chr116639416166394303+3'-UTR,intron-Distal3.6980411.97646K562EWSR1
    chr116639523966395325+intron-Distal3.420139.02184K562CSTF2T
    chr116639330266393371+intron-Distal3.768163.26022HepG2PRPF4
    chr116639376566393784+intron-Distal5.1368817.47156K562NONO
    chr116638605566386146+intron-Distal,intron-Proximal3.788538.54522K562RBFOX2
    chr116639367866393746+intron-Distal4.9685128.93448K562NONO
    chr116638474766384791+intron-Distal3.346288.71990K562DROSHA
    chr116638471766384794+intron-Distal3.345457.69553HepG2PRPF4
    chr116639407766394132+3'-UTR,CDS,intron-Distal4.3700220.17393K562NONO
    chr116638607766386095+intron-Distal,intron-Proximal3.921663.31905K562NONO
    chr116639027766390366+intron-Distal3.362825.58948HepG2HNRNPM
    chr116639422166394279+3'-UTR,intron-Distal4.707826.85102HepG2FUS
    chr116639326866393316+intron-Distal3.531767.55112K562EWSR1
    chr116639613666396183+intron-Distal3.508644.49282HepG2HNRNPM
    chr116638651166386520+intron-Distal3.861523.31905K562NONO
    chr116639144766391505+intron-Distal,intron-Proximal3.603974.71116K562CPSF6
    chr116640562566405779+intron-Distal3.698777.95694HepG2NKRF
    chr116639418266394303+3'-UTR,intron-Distal3.073237.95558HepG2SFPQ
    chr116638493666384959+intron-Distal3.159043.41462K562EWSR1
    chr116639386366393894+intron-Distal,intron-Proximal3.548137.84057K562NONO
    chr116639347866393523+intron-Distal4.8264312.48282K562NONO
    chr116639179566391878+3'-UTR,CDS,intron-Distal,intron-Proximal3.902298.88468K562RBM15
    chr116639401866394043+3'-UTR,CDS,intron-Distal3.271865.25167K562TIA1
    chr116638457666384713+intron-Distal,intron-Proximal3.8509432.89606HepG2EFTUD2
    chr116639585366395902+intron-Distal3.496366.07399HepG2SFPQ
    chr116639431066394363+3'-UTR,intron-Distal3.8971511.83186K562NONO
    chr116642860866428692+intron-Distal3.037334.67779HepG2SUGP2
    chr116638473366384795+intron-Distal3.510486.55355HepG2RBFOX2
    chr116640563366405772+intron-Distal4.759208.34312K562FUS
    chr116639155166391629+intron-Distal,intron-Proximal3.794137.43415K562DROSHA
    chr116639349766393580+intron-Distal4.2326410.59817HepG2SFPQ
    chr116639357566393619+intron-Distal5.2560421.13315K562NONO
    chr116639442966394510+3'-UTR,intron-Distal3.2832615.14307HepG2DDX55
    chr116638669066386743+intron-Distal3.358866.81718HepG2HNRNPM
    chr116639278666392833+CDS,intron-Distal3.752905.34973K562GEMIN5
    chr116639368766393760+intron-Distal3.260697.44204HepG2SFPQ
    chr116638462866384700+intron-Distal,intron-Proximal3.734979.71532HepG2FASTKD2
    chr116639331966393417+intron-Distal3.5303511.11302K562EWSR1
    chr116638535666385428+intron-Distal3.016347.48668HepG2RBFOX2
    chr116639326866393326+intron-Distal3.8589013.05640K562CSTF2T
    chr116639167266391761+3'-UTR,CDS,intron-Distal,intron-Proximal3.3651911.83307HepG2BUD13
    chr116638636166386413+intron-Distal4.384188.71921HepG2HNRNPM
    chr116639307166393124+CDS,intron-Distal4.555546.47740K562FUS
    chr116639316566393190+intron-Distal,intron-Proximal3.942344.15711K562AQR
    chr116638480566384847+intron-Distal4.1823114.46591K562RBM15
    chr116638471966384855+intron-Distal3.5275510.99901K562FUS
    chr116638480366384898+intron-Distal4.4361019.00990K562NONO
    chr116638478466384853+intron-Distal3.001094.73159HepG2SFPQ
    chr116639143866391504+CDS,intron-Distal,intron-Proximal3.802215.51706K562TAF15
    chr116640540266405447+intron-Distal3.453215.20317K562NONO
    chr116639202866392128+3'-UTR,CDS,intron-Distal3.2018411.06491K562TIA1
    chr116641394366414047+intron-Distal3.407977.84972HepG2CSTF2
    chr116639162866391656+intron-Distal,intron-Proximal3.351845.82802K562HNRNPM
    chr116641063466410675+intron-Distal3.692434.61500HepG2HNRNPM
    chr116638461166384706+intron-Distal,intron-Proximal3.632499.64528HepG2GTF2F1
    chr116639392866393986+3'-UTR,CDS,intron-Distal,intron-Proximal4.1976314.37174K562TIA1
    chr116639175366391896+3'-UTR,CDS,intron-Distal,intron-Proximal3.448005.11480HepG2UCHL5
    chr116639347666393558+intron-Distal3.468844.33160K562FUS
    chr116638471766384781+intron-Distal3.6083713.18621HepG2EFTUD2
    chr116639154566391606+intron-Distal,intron-Proximal3.227314.49508K562EWSR1
    chr116639326466393307+intron-Distal4.7617021.84993K562NONO
    chr116639268466392736+CDS,intron-Distal3.025643.06971K562YBX3
    chr116639340466393452+intron-Distal6.2139320.82903K562NONO
    chr116639039866390449+intron-Distal3.089484.23155HepG2MATR3
    chr116639330766393355+intron-Distal5.0144023.53630K562NONO
    chr116638479766384858+intron-Distal3.6309610.46768K562CSTF2T
    chr116639369066393759+intron-Distal3.205416.56774K562FUS
    chr116639163666391662+intron-Distal,intron-Proximal3.349898.12193K562NONO
    chr116639529066395333+intron-Distal3.296985.17833HepG2HNRNPUL1
    chr116640533466405390+intron-Distal5.1378912.10714K562FMR1
    chr116638479966384853+intron-Distal3.339437.20533HepG2EFTUD2
    chr116639451366394600+3'-UTR,intron-Distal3.2692711.52721K562ZC3H11A
    chr116638462766384703+intron-Distal,intron-Proximal3.082049.01876K562XRCC6
    chr116638471466384776+intron-Distal3.619985.78686K562SLTM
    chr116639392166393978+3'-UTR,CDS,intron-Distal,intron-Proximal3.5118216.72290K562NONO
    chr116639218966392264+CDS,intron-Distal4.329284.18579K562MATR3
    chr116639341766393453+intron-Distal4.574745.55667K562EWSR1
    chr116639362666393705+intron-Distal3.391977.89808K562EWSR1
    chr116638462366384701+intron-Distal,intron-Proximal3.725327.06202K562AATF
    chr116640539866405453+intron-Distal4.4118413.86322HepG2CSTF2T
    chr116638485966384980+intron-Distal3.047147.31089K562FUS
    chr116638460966384725+intron-Distal,intron-Proximal3.7442912.97249K562EWSR1
    chr116639126866391334+intron-Distal,intron-Proximal3.345934.18053K562HNRNPM
    chr116639585066395895+intron-Distal5.1276919.58113K562NONO
    chr116639279766392833+CDS,intron-Distal3.723707.90586K562NONO
    chr116639192966391973+3'-UTR,CDS,intron-Distal3.6903715.28685K562RBM15
    chr116639170466391736+3'-UTR,CDS,intron-Distal3.598177.39702K562RBM15
    chr116639155166391609+intron-Distal,intron-Proximal4.1980517.83733K562NONO
    chr116639137166391445+CDS,intron-Distal,intron-Proximal3.919087.94253K562FUS
    chr116639496166395037+intron-Distal3.601576.33414K562FUS
    chr116639451566394560+3'-UTR,intron-Distal3.7046927.52853K562PABPC4
    chr116638473166384784+intron-Distal4.0804014.36250K562GEMIN5
    chr116640534066405397+intron-Distal3.826216.45701K562CSTF2T
    chr116639178366391821+3'-UTR,CDS,intron-Distal,intron-Proximal3.562303.76985K562MTPAP
    chr116638462766384711+intron-Distal,intron-Proximal3.557727.87525HepG2DGCR8
    chr116638510966385129+intron-Distal,intron-Proximal3.067193.38183K562NONO
    chr116639420666394233+3'-UTR,intron-Distal4.145548.82082K562NONO
    chr116638475166384790+intron-Distal3.958843.12328HepG2DDX52
    chr116639442666394510+3'-UTR,intron-Distal3.034226.45493HepG2LARP4
    chr116638462166384709+intron-Distal,intron-Proximal3.5990714.40125K562ZRANB2
    chr116639429466394310+3'-UTR,intron-Distal4.170418.40323K562NONO
    chr116639144566391500+intron-Distal,intron-Proximal3.349055.07243K562FUS
    chr116639255166392622+CDS,intron-Distal3.588195.09665HepG2HNRNPK
    chr116640533066405393+intron-Distal4.8483617.60836HepG2CSTF2
    chr116638461666384754+intron-Distal,intron-Proximal3.5732813.99866K562GTF2F1
    chr116639339466393451+intron-Distal3.641546.85446HepG2XPO5
    chr116638455566384691+intron-Distal,intron-Proximal3.651558.08209K562XRN2
    chr116639359066393690+intron-Distal3.7057410.54080K562FUS
    chr116639431566394369+3'-UTR,intron-Distal3.270157.04357K562LSM11
    chr116639125166391283+intron-Distal,intron-Proximal3.902223.00997K562TAF15
    chr116639154066391602+intron-Distal,intron-Proximal3.385425.64470K562AATF
    chr116643165966431715+intron-Distal3.236473.63132HepG2HNRNPC
    chr116639365066393685+intron-Distal3.445257.14178K562DROSHA
    chr116640569066405766+intron-Distal4.452096.65741HepG2CSTF2
    chr116639161866391665+intron-Distal,intron-Proximal3.148683.74203K562FUS
    chr116639424166394289+3'-UTR,intron-Distal3.520035.12113HepG2LSM11
    chr116638460666384684+intron-Distal,intron-Proximal3.061655.88442K562DDX42
    chr116639341566393464+intron-Distal3.457365.67571HepG2SFPQ
    chr116638466066384716+intron-Distal,intron-Proximal3.184623.72597HepG2RBM5
    chr116639450666394598+3'-UTR,intron-Distal3.106028.82769K562FUS
    chr116639266966392698+CDS,intron-Distal3.493153.75624K562AKAP8L
    chr116639582466395874+intron-Distal4.4690518.89928HepG2XPO5
    chr116639146266391501+intron-Distal,intron-Proximal4.019035.59743K562DROSHA
    chr116639177266391861+3'-UTR,CDS,intron-Distal,intron-Proximal3.2888210.85799K562UCHL5
    chr116638463566384716+intron-Distal,intron-Proximal3.2794614.44217K562FASTKD2
    chr116639306066393130+CDS,intron-Distal3.273807.19121K562IGF2BP2
    chr116639299866393075+CDS,intron-Distal3.956086.58297HepG2HNRNPK
    chr116639154466391615+intron-Distal,intron-Proximal4.505435.12726HepG2FUS
    chr116638463066384694+intron-Distal,intron-Proximal3.561803.07278HepG2UCHL5
    chr116639210466392159+CDS,intron-Distal3.973896.37184K562RBM15
    chr116639316466393225+intron-Distal,intron-Proximal4.115114.93080K562AKAP8L
    chr116639197866392015+3'-UTR,CDS,intron-Distal3.953218.35508K562NONO
    chr116639442966394461+3'-UTR,intron-Distal4.9467215.62507K562TIA1
    chr116639131766391359+intron-Distal,intron-Proximal4.076123.53067K562SRSF1
    chr116639418666394230+3'-UTR,intron-Distal3.537753.38341HepG2RBM5
    chr116640568766405799+intron-Distal3.798864.29577K562FTO
    chr116639376066393809+intron-Distal4.292297.18614HepG2SFPQ
    chr116639425466394292+3'-UTR,intron-Distal3.635935.60676K562DDX52
    chr116639376666393823+intron-Distal3.521268.91914K562CSTF2T
    chr116639354166393571+intron-Distal3.776573.13741HepG2FUS
    chr116639135166391393+CDS,intron-Distal,intron-Proximal4.085676.32636HepG2U2AF2
    chr116639330666393393+intron-Distal3.458367.88033HepG2NKRF
    chr116639326266393308+intron-Distal4.697147.13350K562FUS
    chr116640564066405679+intron-Distal5.5668412.49946K562NONO
    chr116638463566384714+intron-Distal,intron-Proximal3.873267.34123K562DDX24
    chr116638853766388593+intron-Distal3.097395.75205K562LIN28B
    chr116639332666393391+intron-Distal3.6985311.50274K562CSTF2T
    chr116639154466391621+intron-Distal,intron-Proximal4.1924315.79697HepG2HNRNPM
    chr116639204866392071+3'-UTR,CDS,intron-Distal3.562494.29728K562GEMIN5
    chr116639456066394609+3'-UTR,intron-Distal4.1685841.25830K562PABPC4
    chr116639584366395888+intron-Distal4.614143.41592K562XRCC6
    chr116639451766394559+3'-UTR,intron-Distal3.1506713.94719K562NONO
    chr116638616666386223+intron-Distal3.271408.57165HepG2HNRNPM
    chr116639137766391438+CDS,intron-Distal3.804064.71062K562TAF15
    chr116638614666386230+intron-Distal3.575407.14548K562RBFOX2
    chr116639587466395899+intron-Distal4.9174417.87323HepG2XPO5
    chr116639139166391439+CDS,intron-Distal3.366753.53873HepG2HNRNPM
    chr116638482166384874+intron-Distal3.011616.29446K562RBFOX2
    chr116638940866389446+intron-Distal3.916464.01529K562HNRNPC
    chr116639191366391973+3'-UTR,CDS,intron-Distal3.5253710.17992HepG2RBM15
    chr116639399766394039+3'-UTR,CDS,intron-Distal4.312617.11621HepG2SFPQ
    chr116638478766384833+intron-Distal3.123275.45497K562XRCC6
    chr116639014266390181+intron-Distal4.133213.78432HepG2MATR3
    chr116638460066384730+intron-Distal,intron-Proximal3.380078.28988HepG2FUS
    chr116639477666394827+3'-UTR,intron-Distal,polyA_site5.062728.18518K562EWSR1
    chr116639179166391887+3'-UTR,CDS,intron-Distal,intron-Proximal3.245556.01220K562SRSF1
    chr116640576066405802+intron-Distal5.6793714.06815K562NONO
    chr116640567866405752+intron-Distal3.8112714.25101HepG2CSTF2T
    chr116639318666393245+intron-Distal,intron-Proximal3.621896.25023HepG2EFTUD2
    chr116642712366427189+intron-Distal4.232123.42734K562PTBP1
    chr116640534266405390+intron-Distal4.4053510.21237HepG2CSTF2T
    chr116639409966394190+3'-UTR,CDS,intron-Distal3.281605.33443K562IGF2BP2
    chr116638472866384792+intron-Distal3.574894.88781HepG2XRN2
    chr116639422266394259+3'-UTR,intron-Distal3.518155.05294K562UPF1
    chr116642278566422825+intron-Distal4.012953.80060HepG2HNRNPC
    chr116639378466393829+intron-Distal4.0811414.48980K562NONO
    chr116639451666394576+3'-UTR,intron-Distal3.3662515.44154K562DDX6
    chr116638461566384721+intron-Distal,intron-Proximal3.8345621.85075K562CSTF2T
    chr116639156166391616+intron-Distal,intron-Proximal3.406245.42622HepG2RBM5
    chr116638465366384712+intron-Distal,intron-Proximal3.6512610.77856HepG2FAM120A
    chr116639400066394049+3'-UTR,CDS,intron-Distal3.5813812.56215K562NONO
    chr116639145466391510+intron-Distal,intron-Proximal3.238196.83682K562EXOSC5
    chr116640564166405683+intron-Distal3.969095.57638K562CSTF2T
    chr116640569566405751+intron-Distal4.037123.30705HepG2GTF2F1
    chr116641060266410634+intron-Distal4.455193.97018HepG2HNRNPM
    chr116639335566393404+intron-Distal4.5779923.50820K562NONO
    chr116639198966392020+3'-UTR,CDS,intron-Distal3.9599613.02217K562RBM15
    chr116640535366405447+intron-Distal3.122245.60791K562FUS
    chr116639392366393993+3'-UTR,CDS,intron-Distal,intron-Proximal3.4639914.39823HepG2SFPQ
    chr116640576866405796+intron-Distal4.611924.23889K562TIA1
    chr116638473366384770+intron-Distal3.059624.30396K562UCHL5
    chr116638460866384650+intron-Distal,intron-Proximal4.132424.35255HepG2PCBP2
    chr116639269866392753+CDS,intron-Distal5.450807.80606K562AKAP8L
    chr116639360966393745+intron-Distal3.198775.84854HepG2NKRF
    chr116639359366393687+intron-Distal3.0319110.47415HepG2SFPQ
    chr116638461966384718+intron-Distal,intron-Proximal3.6977712.29282K562FUS
    chr116639197366392021+3'-UTR,CDS,intron-Distal3.130745.60131HepG2RBM15
    chr116642864366428694+intron-Distal3.959253.27829HepG2MATR3
    chr116639614266396189+intron-Distal4.2635212.85879K562NONO
    chr116638474566384779+intron-Distal4.8908915.04626K562RBM15
    chr116639153266391604+intron-Distal,intron-Proximal3.077235.64380K562EXOSC5
    chr116639333966393415+intron-Distal3.088884.52410HepG2SFPQ
    chr116639442566394506+3'-UTR,intron-Distal3.0684512.58694K562DDX6
    chr116639451566394605+3'-UTR,intron-Distal4.1701218.91919HepG2DDX55
    chr116639443766394512+3'-UTR,intron-Distal3.4109620.81110K562PABPC4
    chr116641761266417688+intron-Distal3.609625.34807K562ILF3
    chr116639305066393114+CDS,intron-Distal3.692383.66583K562AKAP1
    chr116638462366384719+intron-Distal,intron-Proximal3.6504828.33739K562GEMIN5
    chr116639320866393247+intron-Distal,intron-Proximal4.2086513.26094K562NONO
    chr116639330866393425+intron-Distal4.1623214.89732K562FUS
    chr116640573366405792+intron-Distal3.001094.73159HepG2SFPQ
    chr116640385866403925+intron-Distal3.088184.37069HepG2ILF3
    chr116638536666385405+intron-Distal4.871424.15474K562XRCC6
    chr116639382966393893+intron-Distal,intron-Proximal3.727034.84707HepG2HNRNPK
    chr116638461666384732+intron-Distal,intron-Proximal3.7957432.33919K562DROSHA
    chr116639307966393126+CDS,intron-Distal4.0930716.42543K562NONO
    chr116638467766384724+intron-Distal,intron-Proximal3.956933.43895HepG2LARP4
    chr116639404966394077+3'-UTR,CDS,intron-Distal3.634209.81526K562NONO
    chr116639664866396706+intron-Distal3.230984.11679HepG2SFPQ
    chr116638454066384574+intron-Proximal3.396558.17562K562AQR
    chr116638454466384566+intron-Proximal4.406477.37756HepG2AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for RBM4 is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for RBM4 is not available on ENCORE database.

    • 65 RBPs can affect the levels of RBM4.  








    The Knockdown/knockout RNA-Seq assay for RBM4 is not available on ENCORE database.





    65 RBPs can affect the gene expression of RBM4 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    RBM4ENSG00000173933.151696.412901302.644400.380906.245405.40690HepG2ACO1
    RBM4ENSG00000173933.151665.215701319.916900.335202.509301.55820HepG2ADAR
    RBM4ENSG00000173933.152357.969301913.710300.301101.747401.31420HepG2AKAP1
    RBM4ENSG00000173933.151650.763401308.770800.334804.391903.44060HepG2AKAP8L
    RBM4ENSG00000173933.152045.111401583.402400.369102.806002.01720HepG2ASCC1
    RBM4ENSG00000173933.152896.226401758.831400.7195011.9102010.78460HepG2BOP1
    RBM4ENSG00000173933.152016.711301504.351700.422803.640802.76280HepG2CIRBP
    RBM4ENSG00000173933.151494.591501302.368700.198502.109401.51670HepG2CKAP4
    RBM4ENSG00000173933.151668.676001077.309300.631204.023503.09520HepG2CNOT7
    RBM4ENSG00000173933.151187.414301614.72700-0.443503.834503.03750HepG2CPSF6
    RBM4ENSG00000173933.151434.195701204.762900.251402.833401.99000HepG2DDX19B
    RBM4ENSG00000173933.151452.543801246.279600.220902.027001.43310HepG2DKC1
    RBM4ENSG00000173933.151649.511501248.241000.402003.111202.13740HepG2EEF2
    RBM4ENSG00000173933.152211.007301628.882000.440702.692602.01300HepG2EIF4B
    RBM4ENSG00000173933.151339.946502006.49080-0.5825011.8020010.31060HepG2EIF4G1
    RBM4ENSG00000173933.151532.610201922.05650-0.326702.420001.65520HepG2EIF4G2
    RBM4ENSG00000173933.152702.705202323.383200.218102.423801.85430HepG2ETF1
    RBM4ENSG00000173933.151136.59700902.098000.333302.100901.32500HepG2GEMIN5
    RBM4ENSG00000173933.151275.159501830.48470-0.521504.466403.66560HepG2GPKOW
    RBM4ENSG00000173933.151683.634801341.779200.327302.782902.13440HepG2HNRNPA1
    RBM4ENSG00000173933.151856.018601366.621000.441504.794203.58220HepG2HNRNPM
    RBM4ENSG00000173933.151045.635101482.64670-0.503808.766707.73310HepG2HNRNPU
    RBM4ENSG00000173933.151509.174401060.342000.509102.586301.56720HepG2METAP2
    RBM4ENSG00000173933.151135.780301548.87710-0.447504.022903.12510HepG2NSUN2
    RBM4ENSG00000173933.151651.540001345.934000.295103.563602.69560HepG2PRPF4
    RBM4ENSG00000173933.151508.922801925.04210-0.351403.147502.51820HepG2PUF60
    RBM4ENSG00000173933.152357.557302043.587000.206103.257302.62470HepG2PUM1
    RBM4ENSG00000173933.152404.952002042.050900.235902.316301.70100HepG2PUM2
    RBM4ENSG00000173933.151600.419501326.828900.270403.382602.71880HepG2PUS1
    RBM4ENSG00000173933.151386.586001734.62000-0.323103.431702.74640HepG2QKI
    RBM4ENSG00000173933.152838.871401941.927400.5477011.7475010.83380HepG2RBM22
    RBM4ENSG00000173933.151226.966801574.27700-0.359603.413902.67120HepG2RBM25
    RBM4ENSG00000173933.151315.33740985.983400.415703.918103.19840HepG2RPS19
    RBM4ENSG00000173933.151067.752901320.34140-0.306303.801903.06770HepG2SAFB2
    RBM4ENSG00000173933.152656.969801842.728400.527804.032203.21140HepG2SF3A3
    RBM4ENSG00000173933.151294.963701729.08360-0.417103.740602.93190HepG2SF3B1
    RBM4ENSG00000173933.151790.661801539.705800.217702.848802.19710HepG2SMN1
    RBM4ENSG00000173933.152825.452302193.351200.365207.367006.65680HepG2SRFBP1
    RBM4ENSG00000173933.151228.296701416.00840-0.205202.004601.52020HepG2SRSF9
    RBM4ENSG00000173933.152252.805301904.375600.242303.212202.66900HepG2SSB
    RBM4ENSG00000173933.151192.123201564.44680-0.392104.901304.18860HepG2TAF15
    RBM4ENSG00000173933.151358.261301990.87060-0.551603.870902.87390HepG2UBE2L3
    RBM4ENSG00000173933.153531.209901577.777301.1622031.8026030.11740HepG2UTP3
    RBM4ENSG00000173933.151544.932401328.241900.217902.441601.80440HepG2ZC3H8
    RBM4ENSG00000173933.151962.653301468.423500.418404.314302.80260K562AARS
    RBM4ENSG00000173933.153363.962401957.497600.7811027.5872025.90360K562AGGF1
    RBM4ENSG00000173933.152816.461602150.967400.388804.058202.81780K562AKAP8
    RBM4ENSG00000173933.153454.086502036.858400.761907.599806.46920K562AKAP8L
    RBM4ENSG00000173933.154694.920002473.200700.9246019.9346018.53010K562AQR
    RBM4ENSG00000173933.152698.458002137.142500.336404.489103.29570K562ATP5C1
    RBM4ENSG00000173933.151528.921201825.02660-0.255402.050401.36650K562CPSF6
    RBM4ENSG00000173933.153091.105202464.120200.327005.430504.56210K562DDX47
    RBM4ENSG00000173933.151461.919601151.979700.343603.721902.80870K562EIF3G
    RBM4ENSG00000173933.151994.223301295.526300.6222013.2008011.97910K562FXR1
    RBM4ENSG00000173933.15773.162101036.66640-0.423102.438301.78110K562G3BP2
    RBM4ENSG00000173933.151444.717401742.40470-0.270302.058001.36930K562GPKOW
    RBM4ENSG00000173933.151258.794701606.58610-0.352003.233702.59540K562HNRNPC
    RBM4ENSG00000173933.152691.862502226.850800.273502.456801.46810K562HNRNPL
    RBM4ENSG00000173933.152156.426001566.025700.461403.329102.30040K562HNRNPM
    RBM4ENSG00000173933.151639.530102038.41780-0.314203.621802.60030K562HNRNPU
    RBM4ENSG00000173933.153030.305402161.638800.487206.604805.20370K562KIF1C
    RBM4ENSG00000173933.152977.739002421.578300.298202.664701.77650K562MBNL1
    RBM4ENSG00000173933.151676.655201931.63120-0.204202.203601.47840K562MTPAP
    RBM4ENSG00000173933.153026.229301697.349000.834109.307407.31330K562NAA15
    RBM4ENSG00000173933.152747.472901743.951900.655603.148602.07260K562PABPN1
    RBM4ENSG00000173933.151655.226001334.956000.310102.473301.55150K562PCBP2
    RBM4ENSG00000173933.151960.399701457.811200.427203.838903.06810K562PTBP1
    RBM4ENSG00000173933.154954.226402020.051601.2942024.0807022.48950K562PUS1
    RBM4ENSG00000173933.153543.023201968.197100.8480011.7647010.55150K562RBM15
    RBM4ENSG00000173933.151841.295701470.852300.324002.371701.37600K562NELFE
    RBM4ENSG00000173933.152466.126202117.711500.219602.228101.49020K562SF3A3
    RBM4ENSG00000173933.152588.783202024.902300.354306.761705.49310K562WDR43
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for RBM4 is not available on ENCORE database.





    22 RBPs can affect the splicing of RBM4 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SERBM4ENSG00000173933.15chr11+6641210466412214664112206641161166413497664139390.060000.000490.01167includedK562SRSF1
    SERBM4ENSG00000173933.15chr11+664109206641161166407170664075946641349766413938-0.114000.005050.07634excludedK562SRSF1
    SERBM4ENSG00000173933.15chr11+664109206641161166407170664075946641349766413938-0.095000.000920.01911excludedHepG2U2AF1
    SERBM4ENSG00000173933.15chr11+6641092066411611664064056640759466413497664139400.088000.000040.00249includedK562AKAP8L
    SERBM4ENSG00000173933.15chr11+664109206641161166407170664075946641349766413938-0.186000.000000.00043excludedHepG2DKC1
    SERBM4ENSG00000173933.15chr11+664109206641161166407170664075946641349766413938-0.200000.000000.00000excludedHepG2AKAP1
    SERBM4ENSG00000173933.15chr11+6640630866406364664060876640622366407170664077600.068000.001510.01724includedK562AQR
    SERBM4ENSG00000173933.15chr11+6641092066411611664064056640759466413497664139400.115000.000010.00024includedK562AQR
    SERBM4ENSG00000173933.15chr11+6641092066411611664064056640759466413497664139380.103000.000000.00000includedK562PUS1
    SERBM4ENSG00000173933.15chr11+664109206641161166407170664075946641349766413938-0.161000.000260.08696excludedK562KHSRP
    SERBM4ENSG00000173933.15chr11+664109206641161166406405664075946641349766413938-0.112000.000650.03642excludedHepG2PTBP1
    SERBM4ENSG00000173933.15chr11+6641092066411611664071706640759466413497664139380.123000.000200.01457includedK562EFTUD2
    SERBM4ENSG00000173933.15chr11+664071706640759466384101663845286641349766413939-0.356000.001840.07940excludedK562EFTUD2
    SERBM4ENSG00000173933.15chr11+6640602966406223663840966638452866407170664086630.235000.000030.00935includedK562HNRNPM
    SERBM4ENSG00000173933.15chr11+664109206641161166406405664075946641349766413938-0.165000.000000.00000excludedHepG2SF3A3
    SERBM4ENSG00000173933.15chr11+664109206641161166406405664075946641349766413938-0.115000.000080.01508excludedHepG2SSB
    SERBM4ENSG00000173933.15chr11+6641092066411611664064056640759466413497664139400.094000.001530.08663includedK562HNRNPUL1
    SERBM4ENSG00000173933.15chr11+664109206641161166384096663845286641349766413938-0.124000.000600.03107excludedHepG2SF3B4
    SERBM4ENSG00000173933.15chr11+6641210466412214664112206641161166413497664139390.055000.000800.08868includedK562RBM22
    SERBM4ENSG00000173933.15chr11+6641092066411611664064056640759466413497664139380.071000.003410.08391includedK562UTP18
    SERBM4ENSG00000173933.15chr11+664109206641161166406405664075946641349766413940-0.111000.002960.08493excludedK562TARDBP
    SERBM4ENSG00000173933.15chr11+6641092066411611664064056640759466413497664139380.072000.001160.03064includedK562RBM15
    SERBM4ENSG00000173933.15chr11+6640630866406364664060876640622366407170664077600.071000.004760.08979includedK562AGGF1
    SERBM4ENSG00000173933.15chr11+6641092066411611664064056640759466413497664139400.093000.000040.00189includedK562AGGF1
    SERBM4ENSG00000173933.15chr11+664109206641161166406405664075946641349766413938-0.145000.000010.00102excludedHepG2HNRNPC
    SERBM4ENSG00000173933.15chr11+664109206641161166406405664075946641349766413938-0.241000.000000.00000excludedK562PTBP1
    A3SSRBM4ENSG00000173933.15chr11+664071706640759466407309664075946640602966406223-0.074000.005220.03003shorterK562AQR
    MXERBM4ENSG00000173933.15chr11+66391684663917956640602966406223663840966638452866407170664075940.135000.002220.051101includedK562PPIL4

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for RBM4 is not avaliable on ENCORE database.