RBM4      shRNA in 293T      Batch: BG293LV06

Experiment Information (Status: Sequenced)
BG293LV06-47BG293LV06-48
idx00
TRCN#_or_BGC#TRCN0000160719TRCN0000160719
shRNA_or_gRNA_sequenceCCGGCCTGTTCTTCTGTCCTTCAATCTCGAGATTGAAGGACAGAAGAACAGGTTTTTTGCCGGCCTGTTCTTCTGTCCTTCAATCTCGAGATTGAAGGACAGAAGAACAGGTTTTTTG
PAM
NameRBM4RBM4
Sample_IDBG293LV06-47BG293LV06-48
transduction_Date9/5/249/5/24
daysD4D4
RBP_nameRBM4RBM4
qPCR_result85.188.6
Ave_qPCR86.9
RT-qPCR_primer-F
RT-qPCR_primer-R
protein_conc00
WB_result
Ave_WB
WB_DONE_date
MW
IP
antibody_Cat#
Antibody DCC ID
submitted_to_DCC_date
Rep1_TPM00
Rep2_TPM00
ActionReadyReady
Library_start_date
repeat_library
Note
ID1013410135




Western Blot
Western Blot info was not avaliable




Experiment Status
BG293LV06-47BG293LV06-48
Sample_IDBG293LV06-47BG293LV06-48
Sample Name
Sample NameRBM4-BG293LV06-47RBM4-BG293LV06-48
RBPRBM4RBM4
Cell_Line293T293T
Exp UID
StatusSequencedSequenced
Status_date2024-10-162024-10-16
ProjectENCORE2ENCORE2
Note
ID1348413485




Library-Prep Information
BG293LV06-47BG293LV06-48
Sample #4950
Sample NameRBM4-BG293LV06-47RBM4-BG293LV06-48
Sample_Name_Alias
Index Well PositionA07B07
Index_tableIDT_UniqueDualIndex_96_V2IDT_UniqueDualIndex_96_V2
LibPrep_date2024-09-252024-09-25
Lib_IDLib-240925BLib-240925B
Tecan_Location
Tecan
Tecan_date
Size_bp277273
Peak_Molarity84.2089.10
libSampleQC_DNA_WellDNA_Library_set71/set1/A7.pngDNA_Library_set71/set1/B7.png
RIN9.99.9
libSample_RNA_WellRNA_Library_set71/set1/A7.pngRNA_Library_set71/set1/B7.png
SampleQC_methodTapeStation_2022TapeStation_2022
SampleQC_date2024-09-302024-09-30
Sample_IDBG293LV06-47BG293LV06-48
RBPRBM4RBM4
Batch_IDBG293LV06BG293LV06
WB_result0.0000.000
Library DescriptionTruSeq mRNATruSeq mRNA
Repeat_Library_Suffix
Lib_StatusSendToSequenceSendToSequence
ProjectENCORE2ENCORE2
ID44744475




Sequencing Information
BG293LV06-47BG293LV06-48
Sample_IDBG293LV06-47BG293LV06-48
Sample NameRBM4-BG293LV06-47RBM4-BG293LV06-48
Pool IDPool-240930Pool-240930
LocalServer_folderset71set71
total_reads46,847,36239,684,737
total_aligned_reads43,665,85736,370,630
unique_aligned_reads40,998,15934,030,574
percent_uniqueAligned0.875140.85752
correlation_replicates0.9954380.995438
spikein_reads171,628113,068
percent_spikeins0.003660.00285
original_ReadLength101101
QC_StatusReadyToSubmitReadyToSubmit
ID30433044




Data Submission Information
DCC submission information was not avaliable




File Information
Files of the experiment was not avaliable in the database