PRKCQ-AS1

General Information

Gene Name       : PRKCQ-AS1
Gene ID             : ENSG00000237943.6
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRKCQ-AS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRKCQ-AS1ENSG00000237943.60.110.460.29ENCSR000AEF
HepG2PRKCQ-AS1ENSG00000237943.63.457.955.70ENCSR985KAT
K562PRKCQ-AS1ENSG00000237943.636.0230.7833.40ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRKCQ-AS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRKCQ-AS1 RNA is bound by 1 proteins.  







eCLIP assay for PRKCQ-AS1 is not avaliable on ENCORE database.





1 proteins are bound to PRKCQ-AS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1066229926623106+intron-Distal5.138875.97591K562QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRKCQ-AS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRKCQ-AS1 is not available on ENCORE database.

  • 30 RBPs can affect the levels of PRKCQ-AS1.  








The Knockdown/knockout RNA-Seq assay for PRKCQ-AS1 is not available on ENCORE database.





30 RBPs can affect the gene expression of PRKCQ-AS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRKCQ-AS1ENSG00000237943.2118.3750036.600601.693306.346505.57770HepG2AKAP1
PRKCQ-AS1ENSG00000237943.215.7273041.78870-1.409802.334501.69540HepG2CPSF6
PRKCQ-AS1ENSG00000237943.216.2757047.45420-1.543802.846201.85500HepG2DDX59
PRKCQ-AS1ENSG00000237943.262.6688032.024000.968502.038201.48700HepG2EIF4A3
PRKCQ-AS1ENSG00000237943.239.7623083.87940-1.076902.973302.35340HepG2ETF1
PRKCQ-AS1ENSG00000237943.262.6081031.915900.972002.225601.47670HepG2EWSR1
PRKCQ-AS1ENSG00000237943.28.6661045.20680-2.383104.777003.97280HepG2HNRNPLL
PRKCQ-AS1ENSG00000237943.221.4383048.22910-1.169702.159301.51460HepG2IGF2BP1
PRKCQ-AS1ENSG00000237943.214.4202040.08450-1.475002.158701.49540HepG2NSUN2
PRKCQ-AS1ENSG00000237943.275.5085034.566401.127203.222902.57730HepG2PCBP1
PRKCQ-AS1ENSG00000237943.265.2734033.280400.971702.454501.86500HepG2PUS1
PRKCQ-AS1ENSG00000237943.223.0960052.75110-1.191602.323701.68890HepG2RPLP0
PRKCQ-AS1ENSG00000237943.218.6950049.78760-1.413102.432401.70160HepG2SNRNP70
PRKCQ-AS1ENSG00000237943.29.4492040.22620-2.089902.999302.29870HepG2SUPV3L1
PRKCQ-AS1ENSG00000237943.218.9300044.06270-1.218902.049601.41370HepG2TARDBP
PRKCQ-AS1ENSG00000237943.262.0236027.881501.153402.714902.12250HepG2UTP3
PRKCQ-AS1ENSG00000237943.2393.59680631.69500-0.682505.592904.80900K562AQR
PRKCQ-AS1ENSG00000237943.2325.42890237.056600.457002.157901.61140K562FXR1
PRKCQ-AS1ENSG00000237943.2258.74370386.06150-0.577303.709302.46360K562HNRNPA1
PRKCQ-AS1ENSG00000237943.2154.46750267.96810-0.794804.636203.88220K562HNRNPC
PRKCQ-AS1ENSG00000237943.2319.44540208.431100.615903.154302.15470K562HNRNPM
PRKCQ-AS1ENSG00000237943.2132.92040248.92550-0.905203.115402.04950K562PABPN1
PRKCQ-AS1ENSG00000237943.2404.99050287.668600.493402.892002.05130K562PPIG
PRKCQ-AS1ENSG00000237943.2165.82060240.27090-0.535002.359401.53050K562PSIP1
PRKCQ-AS1ENSG00000237943.2611.46490342.998600.8340010.106808.89280K562PTBP1
PRKCQ-AS1ENSG00000237943.2123.32700206.93410-0.746703.725502.15230K562RBM25
PRKCQ-AS1ENSG00000237943.2150.45320219.26160-0.543302.375801.46230K562RCC2
PRKCQ-AS1ENSG00000237943.2247.62150328.27420-0.406802.020401.32800K562TIA1
PRKCQ-AS1ENSG00000237943.2122.99560231.09490-0.909904.779203.52080K562TIAL1
PRKCQ-AS1ENSG00000237943.2170.22040245.55920-0.528702.359801.49760K562TRIM56
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRKCQ-AS1 is not available on ENCORE database.





8 RBPs can affect the splicing of PRKCQ-AS1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPRKCQ-AS1ENSG00000237943.2chr10+662409966242876622386662288966256376626261-0.196000.001610.05300excludedK562PRPF8
SEPRKCQ-AS1ENSG00000237943.2chr10+6624099662416366223866622889662563766259900.236000.000260.09937includedK562TIA1
SEPRKCQ-AS1ENSG00000237943.2chr10+662409966241636622386662288966256376625990-0.229000.003870.08681excludedK562AKAP8L
SEPRKCQ-AS1ENSG00000237943.2chr10+6624099662416366223866622889662563766259900.273000.000020.01497includedK562KHSRP
SEPRKCQ-AS1ENSG00000237943.2chr10+662409966241636622386662288966256376625990-0.221000.000180.03306excludedK562HNRNPM
SEPRKCQ-AS1ENSG00000237943.2chr10+662409966241636622386662288966256376625990-0.311000.000910.02548excludedK562RBM15
SEPRKCQ-AS1ENSG00000237943.2chr10+6624099662416366223866622889662563766259900.175000.000710.08916includedK562ZC3H8
SEPRKCQ-AS1ENSG00000237943.2chr10+6624099662416366223866622889662563766259900.217000.001340.05019includedK562PTBP1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PRKCQ-AS1 is not avaliable on ENCORE database.