TMEM98

General Information

Gene Name       : TMEM98
Gene ID             : ENSG00000006042.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM98)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM98ENSG00000006042.110.150.020.08ENCSR000AEF
HepG2TMEM98ENSG00000006042.11132.3890.14111.26ENCSR985KAT
K562TMEM98ENSG00000006042.1154.7358.7556.74ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM98 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM98 RNA is bound by 18 proteins.  







eCLIP assay for TMEM98 is not avaliable on ENCORE database.





18 proteins are bound to TMEM98 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr173126849931268557+3'-UTR,intron-Distal3.645233.63497HepG2TIA1
chr173126845331268464+3'-UTR,intron-Distal3.053263.02046HepG2LARP4
chr173126808031268211+3'-UTR,intron-Distal3.8779623.33027HepG2LARP4
chr173126819731268273+3'-UTR,intron-Distal6.1564033.76850K562LIN28B
chr173126849231268553+3'-UTR,intron-Distal3.8552219.54388HepG2DDX55
chr173126850531268564+3'-UTR,intron-Distal3.387005.36609K562TIA1
chr173126808831268196+3'-UTR,intron-Distal4.565004.93188HepG2UPF1
chr173127182631271935+3'-UTR,CDS,intron-Proximal3.553613.55754HepG2U2AF2
chr173126849831268554+3'-UTR,intron-Distal4.818794.74172HepG2TIAL1
chr173126849331268573+3'-UTR,intron-Distal3.7612017.68491HepG2LARP4
chr173126847331268546+3'-UTR,intron-Distal3.360463.27901HepG2UPF1
chr173126818331268207+3'-UTR,intron-Distal5.064607.56505HepG2LIN28B
chr173126820731268303+3'-UTR,intron-Distal7.4928398.43867HepG2LIN28B
chr173126801131268057+3'-UTR,intron-Distal5.096998.18732HepG2LARP4
chr173126809331268190+3'-UTR,intron-Distal3.671148.64357K562UPF1
chr173126859831268633+3'-UTR,intron-Distal3.654075.20772HepG2LARP4
chr173125522931255299+5'-UTR,intron-Proximal5.358956.35567HepG2PRPF8
chr173125837031258420+5'-UTR,intron-Distal,intron-Proximal4.482716.30673HepG2DDX3X
chr173125518131255254+5'-UTR3.570848.88978K562DDX3X
chr173125834331258370+5'-UTR,intron-Distal,intron-Proximal4.7956811.73310HepG2DDX3X
chr173125518731255256+5'-UTR,intron-Proximal3.8714420.32999HepG2DDX3X
chr173125834431258397+5'-UTR,intron-Distal,intron-Proximal3.249775.85428K562DDX3X
chr173125849131258579+5'-UTR,CDS,intron-Proximal3.363859.35807K562DDX3X
chr173125849231258575+5'-UTR,CDS,intron-Proximal3.4551616.12135HepG2DDX3X
chr173125839731258421+5'-UTR,intron-Proximal3.224363.95805K562DDX3X
chr173125834331258426+5'-UTR,intron-Distal,intron-Proximal3.111793.42388HepG2EIF3D
chr173126029631260371+CDS,intron-Proximal4.604433.95187HepG2AQR
chr173126031431260376+CDS,intron-Proximal5.344679.27403HepG2PRPF8
chr173126649331266540+CDS,intron-Distal,intron-Proximal3.279177.97014HepG2LIN28B
chr173125862031258668+CDS3.529494.08283K562DDX3X
chr173126023431260324+CDS,intron-Proximal4.717537.41523K562YBX3
chr173125861031258670+CDS5.0496812.47577HepG2DDX3X
chr173125612831256155+intron-Distal3.246436.48028HepG2HNRNPL
chr173125605631256080+intron-Distal3.942946.64740HepG2HNRNPL
chr173125608031256100+intron-Distal3.897976.90182HepG2HNRNPL
chr173125532131255429+intron-Distal,intron-Proximal4.652384.65580K562GTF2F1
chr173125639131256488+intron-Distal4.128979.89371K562HNRNPL
chr173125533731255432+intron-Distal,intron-Proximal5.6725312.58549HepG2AGGF1
chr173125557431255618+intron-Distal5.379358.64931HepG2AGGF1
chr173125592131255977+intron-Distal4.807587.68255HepG2HNRNPL
chr173125551731255574+intron-Distal5.5478510.36651HepG2AGGF1
chr173125639931256479+intron-Distal5.0844814.38142HepG2HNRNPL
chr173125529631255397+intron-Distal,intron-Proximal4.225413.25631HepG2PRPF4
chr173125610031256128+intron-Distal4.3329010.49938HepG2HNRNPL
chr173125536631255430+intron-Distal4.255414.41148HepG2GTF2F1
chr173125655331256595+intron-Distal4.3243310.08643HepG2HNRNPL
chr173125615531256241+intron-Distal3.9029113.55433HepG2HNRNPL
chr173125607131256214+intron-Distal4.663879.13598K562HNRNPL
chr173125630131256356+intron-Distal4.263114.04407K562HNRNPL
chr173125534531255426+intron-Distal,intron-Proximal5.336649.76847K562HNRNPL
chr173125545531255493+intron-Distal3.880353.82544K562HNRNPL
chr173125598331256057+intron-Distal5.6989117.30888K562AGGF1
chr173125627531256370+intron-Distal6.3261514.30686K562AGGF1
chr173125530531255361+intron-Distal,intron-Proximal3.778506.72632HepG2HNRNPL
chr173125658031256703+intron-Distal5.5241912.10389K562HNRNPL
chr173125527231255444+intron-Distal,intron-Proximal4.3828713.05648HepG2EFTUD2
chr173125600031256024+intron-Distal4.6364511.81106HepG2HNRNPL
chr173125602431256056+intron-Distal4.3399314.15195HepG2HNRNPL
chr173125660831256649+intron-Distal4.152117.64658HepG2HNRNPL
chr173125639131256498+intron-Distal4.753196.14086K562GTF2F1
chr173125552731255586+intron-Distal4.490784.94713K562HNRNPL
chr173125597731256000+intron-Distal4.698007.68255HepG2HNRNPL
chr173125640231256503+intron-Distal5.8018028.73036HepG2AGGF1
chr173125704531257109+intron-Distal4.768077.67538K562HNRNPL
chr173125596831256071+intron-Distal4.236846.89427K562HNRNPL
chr173125599331256084+intron-Distal3.294977.24225HepG2AGGF1
chr173125535031255440+intron-Distal,intron-Proximal4.478453.90539HepG2RBM22
chr173125530731255345+intron-Proximal4.648686.79556K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM98 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM98 is not available on ENCORE database.

  • 98 RBPs can affect the levels of TMEM98.  








The Knockdown/knockout RNA-Seq assay for TMEM98 is not available on ENCORE database.





98 RBPs can affect the gene expression of TMEM98 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM98ENSG00000006042.71367.521001753.74100-0.358902.264101.40700HepG2ABCF1
TMEM98ENSG00000006042.71353.887101620.54580-0.259403.193802.54750HepG2ACO1
TMEM98ENSG00000006042.71556.964101252.377100.314002.212801.32000HepG2ADAR
TMEM98ENSG00000006042.71851.769003139.84610-0.761808.857207.96530HepG2AKAP1
TMEM98ENSG00000006042.71156.124001477.19950-0.353602.323101.46660HepG2BCCIP
TMEM98ENSG00000006042.7741.597501021.27940-0.461703.945003.24290HepG2BOP1
TMEM98ENSG00000006042.71372.537002468.24650-0.8466012.7969011.26670HepG2CIRBP
TMEM98ENSG00000006042.71678.03380897.319400.903007.463706.21590HepG2CNOT7
TMEM98ENSG00000006042.71181.06220937.577600.333002.238501.61130HepG2CPSF6
TMEM98ENSG00000006042.7743.794501498.77830-1.0108034.8667032.76190HepG2DDX19B
TMEM98ENSG00000006042.7407.725201344.76480-1.7217044.7637042.52520HepG2DDX21
TMEM98ENSG00000006042.7652.249701452.43780-1.1550016.9573015.27650HepG2DDX55
TMEM98ENSG00000006042.72034.425802583.67310-0.344802.200801.64380HepG2DDX6
TMEM98ENSG00000006042.71337.990801550.42640-0.212602.022801.42960HepG2DKC1
TMEM98ENSG00000006042.71014.960201261.09400-0.313303.153402.40650HepG2DNAJC21
TMEM98ENSG00000006042.71319.676102483.80000-0.9124013.9046012.64290HepG2EIF2S1
TMEM98ENSG00000006042.7765.029701011.71840-0.403202.531401.66250HepG2EIF3D
TMEM98ENSG00000006042.71015.328301270.29690-0.323202.715901.64350HepG2EIF3G
TMEM98ENSG00000006042.72107.025502744.91630-0.381602.682602.05350HepG2EIF4A3
TMEM98ENSG00000006042.72004.240302672.51290-0.415102.495901.84100HepG2EIF4B
TMEM98ENSG00000006042.71480.737002207.84100-0.5763012.6361011.10540HepG2EIF4G1
TMEM98ENSG00000006042.71840.283602848.94080-0.6305017.3225016.02850HepG2ETF1
TMEM98ENSG00000006042.71276.707801583.57360-0.310802.692801.86820HepG2EWSR1
TMEM98ENSG00000006042.71391.542701770.85650-0.347802.017401.35430HepG2FIP1L1
TMEM98ENSG00000006042.71372.741101710.60290-0.317402.584501.82320HepG2FUBP3
TMEM98ENSG00000006042.71941.949302769.42890-0.512105.163304.23810HepG2FXR1
TMEM98ENSG00000006042.71576.845202569.09170-0.704208.185207.07270HepG2G3BP1
TMEM98ENSG00000006042.71851.965702727.36750-0.558506.205404.86160HepG2G3BP2
TMEM98ENSG00000006042.71128.442001490.77750-0.401703.294002.17710HepG2GNB2L1
TMEM98ENSG00000006042.7520.652801062.78280-1.0295012.6292011.35570HepG2GPKOW
TMEM98ENSG00000006042.7996.144501445.07740-0.536702.685401.34490HepG2HLTF
TMEM98ENSG00000006042.71472.304002056.70300-0.482308.719007.23640HepG2HNRNPA2B1
TMEM98ENSG00000006042.71578.614502601.34410-0.7206010.738509.44470HepG2HNRNPK
TMEM98ENSG00000006042.71662.632902038.55080-0.294104.690303.82910HepG2HNRNPL
TMEM98ENSG00000006042.7979.090601221.81220-0.319502.548601.63440HepG2HNRNPM
TMEM98ENSG00000006042.71899.173102611.43990-0.459504.108003.30020HepG2IGF2BP2
TMEM98ENSG00000006042.71203.363101437.00280-0.256003.557202.73580HepG2ILF2
TMEM98ENSG00000006042.71232.76820874.737000.494902.872501.52200HepG2ILF3
TMEM98ENSG00000006042.72001.691102626.63550-0.392002.391101.46970HepG2KHSRP
TMEM98ENSG00000006042.71554.879302785.91350-0.8413010.862309.67380HepG2MATR3
TMEM98ENSG00000006042.71038.164001433.21110-0.465205.039003.97220HepG2MSI2
TMEM98ENSG00000006042.71643.271202851.54750-0.7952010.557109.35950HepG2NCBP2
TMEM98ENSG00000006042.71864.687902219.09840-0.251002.445301.73130HepG2NOL12
TMEM98ENSG00000006042.7631.89980899.33950-0.509204.135503.22610HepG2NSUN2
TMEM98ENSG00000006042.7523.95100820.06180-0.646303.385202.39740HepG2PABPC1
TMEM98ENSG00000006042.71733.092002539.53550-0.551205.543004.53320HepG2PABPC4
TMEM98ENSG00000006042.72224.724102630.95450-0.242001.838101.32610HepG2PCBP1
TMEM98ENSG00000006042.7617.269001425.82090-1.2078013.4382011.42860HepG2PCBP2
TMEM98ENSG00000006042.7627.50070836.66670-0.415003.670502.24960HepG2PKM
TMEM98ENSG00000006042.7506.23670804.63520-0.668503.835602.04580HepG2PNPT1
TMEM98ENSG00000006042.71039.091101258.43910-0.276302.725201.95640HepG2PRPF4
TMEM98ENSG00000006042.7807.964701120.20450-0.471403.796202.86880HepG2PRPF8
TMEM98ENSG00000006042.71674.575502676.92930-0.6768010.004609.09080HepG2PTBP1
TMEM98ENSG00000006042.71707.969802248.70460-0.396808.651907.72670HepG2PUM1
TMEM98ENSG00000006042.71422.685502247.05860-0.6594012.2656010.91230HepG2PUM2
TMEM98ENSG00000006042.71953.150901650.632800.242703.081602.43910HepG2PUS1
TMEM98ENSG00000006042.72227.111502899.53270-0.380603.541702.84700HepG2QKI
TMEM98ENSG00000006042.71928.821502631.37920-0.448105.251204.34950HepG2RBM25
TMEM98ENSG00000006042.71486.102302979.30260-1.0034016.9221015.80340HepG2NELFE
TMEM98ENSG00000006042.71549.257202774.56640-0.8407014.4929013.25300HepG2RECQL
TMEM98ENSG00000006042.71219.935501635.94940-0.423304.101203.29600HepG2RPLP0
TMEM98ENSG00000006042.7721.56710984.45440-0.448204.077303.34610HepG2RPS19
TMEM98ENSG00000006042.71111.263301624.41370-0.547706.034004.87740HepG2RPS2
TMEM98ENSG00000006042.71304.857501658.22940-0.345802.837901.74810HepG2RPS5
TMEM98ENSG00000006042.7882.751201108.09110-0.328001.978901.30310HepG2RRP9
TMEM98ENSG00000006042.71494.990301252.824000.254903.006502.34140HepG2SAFB2
TMEM98ENSG00000006042.71072.851701520.02150-0.502602.977302.27680HepG2SF3A3
TMEM98ENSG00000006042.71776.701402787.32530-0.649709.058908.08280HepG2SF3B4
TMEM98ENSG00000006042.71798.348002031.15790-0.175601.939001.33320HepG2SLBP
TMEM98ENSG00000006042.71218.142501461.01280-0.262303.385202.68570HepG2SMN1
TMEM98ENSG00000006042.71255.175402689.50330-1.0995050.9283049.48580HepG2SRFBP1
TMEM98ENSG00000006042.71967.247602909.24320-0.564507.527906.83730HepG2SRSF1
TMEM98ENSG00000006042.7785.738801080.22810-0.459202.689801.70360HepG2SRSF3
TMEM98ENSG00000006042.71508.576402366.72010-0.649709.370208.45980HepG2SRSF9
TMEM98ENSG00000006042.71837.792102378.65980-0.372206.930006.02370HepG2SUCLG1
TMEM98ENSG00000006042.7880.996701341.09020-0.606204.604902.88320HepG2SUGP2
TMEM98ENSG00000006042.71013.594601445.81160-0.512404.224603.41380HepG2SUPV3L1
TMEM98ENSG00000006042.71347.646002614.60560-0.9562015.9073014.72740HepG2TAF15
TMEM98ENSG00000006042.7737.77530969.03550-0.393402.656501.67700HepG2TFIP11
TMEM98ENSG00000006042.71379.663502402.82240-0.8004011.7540010.06170HepG2TIA1
TMEM98ENSG00000006042.7735.741001367.00180-0.8937017.8446016.77830HepG2TIAL1
TMEM98ENSG00000006042.71150.074701379.18850-0.262102.835202.26600HepG2TRIM56
TMEM98ENSG00000006042.71198.889001514.85020-0.337502.467101.87150HepG2U2AF1
TMEM98ENSG00000006042.71657.416602190.56660-0.402403.036702.16190HepG2UBE2L3
TMEM98ENSG00000006042.71721.783501348.028600.353005.482804.55120HepG2UPF1
TMEM98ENSG00000006042.7923.722201353.28950-0.550903.385901.97270HepG2XRCC5
TMEM98ENSG00000006042.71133.359701513.14000-0.416902.256401.30350HepG2XRCC6
TMEM98ENSG00000006042.7880.580301826.01290-1.0522019.5373018.14710K562AQR
TMEM98ENSG00000006042.7848.638901016.90240-0.261002.205201.34640K562BCLAF1
TMEM98ENSG00000006042.7467.97940742.17510-0.665305.838104.55740K562BOP1
TMEM98ENSG00000006042.7791.259601019.31330-0.365402.707601.44410K562CIRBP
TMEM98ENSG00000006042.7958.562001278.81800-0.415903.083101.52780K562DDX19B
TMEM98ENSG00000006042.71040.162901231.53740-0.243702.167701.57940K562DDX47
TMEM98ENSG00000006042.71107.115301300.23670-0.232002.006201.37680K562EIF2S2
TMEM98ENSG00000006042.71316.27270960.952400.453804.268003.19890K562FIP1L1
TMEM98ENSG00000006042.7420.44690563.08860-0.421402.012801.42230K562G3BP2
TMEM98ENSG00000006042.7590.08080753.44600-0.352602.277601.55650K562GPKOW
TMEM98ENSG00000006042.71097.960701389.49940-0.339703.535402.52470K562HNRNPU
TMEM98ENSG00000006042.7541.58800735.44610-0.441403.272902.31900K562METAP2
TMEM98ENSG00000006042.7530.56070889.30670-0.745208.654506.89050K562PCBP2
TMEM98ENSG00000006042.71506.828501090.929600.465904.489003.40840K562PPIG
TMEM98ENSG00000006042.71869.293702206.49130-0.239302.338501.45430K562PUM2
TMEM98ENSG00000006042.7780.90410526.340300.569004.110902.86240K562RPS3
TMEM98ENSG00000006042.7841.932101052.93290-0.322603.243402.36300K562SF3A3
TMEM98ENSG00000006042.7403.66800545.73860-0.435002.337001.34350K562U2AF1
TMEM98ENSG00000006042.7444.01280563.65450-0.344202.257101.53260K562U2AF2
TMEM98ENSG00000006042.71028.969301331.82850-0.372203.481601.59890K562UPF2
TMEM98ENSG00000006042.7802.753201233.89910-0.620205.636303.93170K562UTP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM98 is not available on ENCORE database.





21 RBPs can affect the splicing of TMEM98 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM98ENSG00000006042.7chr17+312583443125867731255062312552553126019131260323-0.105000.001410.04824excludedK562PRPF8
SETMEM98ENSG00000006042.7chr17+3125834431258420312552213125525531258492312586770.086000.000050.00787includedHepG2PRPF8
SETMEM98ENSG00000006042.7chr17+312584923125867731255221312552553126019131260323-0.064000.000310.01032excludedHepG2HNRNPK
SETMEM98ENSG00000006042.7chr17+312583443125867731255062312552553126019131260323-0.058000.000640.00842excludedK562AQR
SETMEM98ENSG00000006042.7chr17+312584643125867731255221312552553126019131260323-0.052000.001400.08643excludedHepG2DDX3X
SETMEM98ENSG00000006042.7chr17+3125834431258420312552213125525531258492312586770.171000.000590.07536includedK562DROSHA
SETMEM98ENSG00000006042.7chr17+312584923125867731254927312552553126019131260323-0.157000.001410.09440excludedK562SUPV3L1
SETMEM98ENSG00000006042.7chr17+312583443125842031255221312552553125849231258677-0.105000.000940.05738excludedHepG2FTO
SETMEM98ENSG00000006042.7chr17+312583443125842031255221312552553126019131260323-0.061000.001510.05717excludedHepG2MATR3
SETMEM98ENSG00000006042.7chr17+3125834431258420312552213125525531258492312586770.158000.000020.00758includedHepG2HNRNPUL1
SETMEM98ENSG00000006042.7chr17+312601913126032331254927312552553126130831261342-0.080000.000060.00256excludedHepG2SRSF1
SETMEM98ENSG00000006042.7chr17+312583443125867731255062312552553126019131260323-0.055000.000230.00943excludedHepG2SF3A3
SETMEM98ENSG00000006042.7chr17+3125834431258420312552213125525531258492312586770.203000.000000.00081includedK562HNRNPUL1
SETMEM98ENSG00000006042.7chr17+3125849231258677312549273125525531260191312603230.074000.000390.08767includedHepG2NOL12
SETMEM98ENSG00000006042.7chr17+312613083126134231260191312603233126334931263465-0.117000.000310.00743excludedK562U2AF2
SETMEM98ENSG00000006042.7chr17+312664943126655431263349312634653126780331267996-0.083000.000000.00001excludedK562HNRNPU
SETMEM98ENSG00000006042.7chr17+3125834431258420312552213125525531258492312586770.190000.000160.03775includedK562NPM1
RITMEM98ENSG00000006042.7chr17+312583443125867731258344312584203125849231258677-0.090000.000190.03457excludedK562SRSF7
RITMEM98ENSG00000006042.7chr17+3125834431258677312583443125842031258492312586770.072000.000000.00017includedHepG2MATR3
RITMEM98ENSG00000006042.7chr17+3125834431258677312583443125842031258492312586770.157000.000170.01339includedK562BUD13
RITMEM98ENSG00000006042.7chr17+3125834431258677312583443125842031258492312586770.085000.002680.02782includedK562EFTUD2
MXETMEM98ENSG00000006042.7chr17+3125849231258677312601913126032331255221312552553126130831261381-0.087000.000170.035292includedHepG2BCLAF1
MXETMEM98ENSG00000006042.7chr17+31258344312584203125849231258677312552213125525531260191312603230.138000.007170.070451includedK562DROSHA
MXETMEM98ENSG00000006042.7chr17+31260191312603233126130831261342312549273125525531263349312634650.081000.000710.028441includedHepG2SF3A3
MXETMEM98ENSG00000006042.7chr17+3125849231258677312601913126032331255221312552553126130831261381-0.063000.003870.077572includedHepG2XRN2
MXETMEM98ENSG00000006042.7chr17+3125834431258677312601913126032331255062312552553126130831261342-0.119000.000650.058732includedHepG2SSB
MXETMEM98ENSG00000006042.7chr17+31260191312603233126130831261342312549273125525531263349312634650.112000.000220.007231includedK562PRPF8
MXETMEM98ENSG00000006042.7chr17+3125849231258677312601913126032331255221312552553126130831261381-0.116000.000020.004202includedHepG2PRPF8

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM98 is not avaliable on ENCORE database.