PNPT1

General Information

Gene Name       : PNPT1
Gene ID             : ENSG00000138035.14
Essential Gene : Yes

Functions

Localization(RBPImage: PNPT1)

Domains (AlphaFold: PNPT1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PNPT1ENSG00000138035.1438.0030.0934.05ENCSR000AEF
HepG2PNPT1ENSG00000138035.1424.8451.8038.32ENCSR985KAT
K562PNPT1ENSG00000138035.1446.1242.1744.14ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq PNPT1-BGKLV25-K562ENCSR191VWKPNPT1K562ReleasedENCSR620PUP   shRNAKD% = 88.8,82.9
knockdown followed by RNA-seq PNPT1-BGHLV22-HepG2ENCSR880DEHPNPT1HepG2ReleasedENCSR279HMU   shRNAKD% = 73.1,70.7






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
PNPT1ENCAB230SULA303-917A1Released, ENCODE3BGHLV22-37, Released, ENCODE3BGKLV25-39, Released, ENCODE3


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
PNPT1K562shRNAENCSR191VWKENCSR620PUPPNPT1-BGKLV25-39,PNPT1-BGKLV25-40NT_BGKLV25-1,NT_BGKLV25-288.8,82.9ReleasedENCODE3
PNPT1HepG2shRNAENCSR880DEHENCSR279HMUPNPT1-BGHLV22-37,PNPT1-BGHLV22-38non-target-BGHLV22-1_17746,non-target-BGHLV22-2_1774773.1,70.7ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    PNPT1: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Mitochondria












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    PNPT1Product_ID: A303-917A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: PNPT1-human    		 PNPT1_Secondary_Western.png<br>Caption: Western blot following shRNA against PNPT1 in K562 and HepG2 whole cell lysate using PNPT1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against PNPT1. Lanes 5-8 follow the same pattern, but in HepG2. PNPT1 protein appears as the green band, Tubulin serves as a control and appears in red.
    		 K562_Bethyl_A303-917A_1_PNPT1.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using PNPT1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-PNPT1 antibody (lanes under 'PNPT1').
    		 PNPT1_Secondary_Western.png<br>Caption: Western blot following shRNA against PNPT1 in K562 and HepG2 whole cell lysate using PNPT1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against PNPT1. Lanes 5-8 follow the same pattern, but in HepG2. PNPT1 protein appears as the green band, Tubulin serves as a control and appears in red.








    RNA Targets

    • eCLIP assay for PNPT1 is not avaliable on ENCORE database.



    Proteins bound to RNA
    • PNPT1 RNA is bound by 15 proteins.  







    eCLIP assay for PNPT1 is not avaliable on ENCORE database.





    15 proteins are bound to PNPT1 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr25587048855870538-3'-UTR,CDS,intron-Distal3.549087.89260HepG2BCLAF1
    chr25587029455870334-3'-UTR,CDS,intron-Distal5.8918913.02740HepG2BCLAF1
    chr25587250055872536-3'-UTR,CDS,intron-Distal4.984025.68196HepG2BCLAF1
    chr25587452655874592-3'-UTR,CDS,intron-Distal,intron-Proximal4.319933.69113K562LIN28B
    chr25587048955870555-3'-UTR,CDS,intron-Distal,intron-Proximal3.346004.41784HepG2GRWD1
    chr25587030855870348-3'-UTR,CDS,intron-Distal3.541143.07653K562ZNF622
    chr25587454155874587-3'-UTR,CDS,intron-Distal,intron-Proximal3.853485.15500HepG2BCLAF1
    chr25588343155883496-3'-UTR,CDS,intron-Distal,intron-Proximal5.100585.02942K562EFTUD2
    chr25587029555870347-3'-UTR,CDS,intron-Distal4.070738.43090K562DDX24
    chr25587247455872485-3'-UTR,CDS,intron-Distal,intron-Proximal3.592936.16312K562AQR
    chr25590785055907909-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.540377.74495HepG2U2AF2
    chr25587253655872568-3'-UTR,CDS,intron-Distal,intron-Proximal5.406389.32793HepG2BCLAF1
    chr25587339355873449-3'-UTR,CDS,intron-Distal,intron-Proximal5.8576312.09921HepG2BCLAF1
    chr25588913955889209-3'-UTR,CDS,intron-Distal,intron-Proximal4.023445.82046K562SF3B4
    chr25587045355870525-3'-UTR,CDS,intron-Distal,intron-Proximal4.361807.39346K562DDX24
    chr25587045355870475-3'-UTR,CDS,intron-Distal,intron-Proximal4.398136.23296HepG2BCLAF1
    chr25588203655882079-3'-UTR,CDS,intron-Distal5.6947511.16146HepG2BCLAF1
    chr25587248255872535-3'-UTR,CDS,intron-Distal,intron-Proximal3.867413.34184HepG2GRWD1
    chr25587045255870489-3'-UTR,CDS,intron-Distal,intron-Proximal3.443305.11891HepG2GRWD1
    chr25587045255870477-3'-UTR,CDS,intron-Distal,intron-Proximal3.715894.80912HepG2PPIG
    chr25590681455906854-3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal3.982387.65975HepG2BCLAF1
    chr25586348155863527-3'-UTR,CDS,intron-Distal,intron-Proximal4.076284.01763HepG2GRWD1
    chr25587454155874588-3'-UTR,CDS,intron-Distal,intron-Proximal3.466165.86107HepG2PPIG
    chr25588203655882089-3'-UTR,CDS,intron-Distal,intron-Proximal4.356848.38781HepG2PPIG
    chr25588326555883317-3'-UTR,CDS,intron-Distal,intron-Proximal3.477524.77136HepG2PPIG
    chr25587033455870348-3'-UTR,CDS,intron-Distal4.319366.23296HepG2BCLAF1
    chr25587029255870350-3'-UTR,CDS,intron-Distal,intron-Proximal5.6062110.41518HepG2PPIG
    chr25587354955873563-3'-UTR,CDS,intron-Distal,intron-Proximal3.567343.68471HepG2BCLAF1
    chr25589505455895089-5'-UTR,CDS,intron-Distal3.980335.36555HepG2BCLAF1
    chr25592086655920978-5'-UTR,CDS,intron-Distal,intron-Proximal3.009335.04173HepG2NCBP2
    chr25589845855898489-5'-UTR,CDS,intron-Distal3.171633.94979HepG2BCLAF1
    chr25590015655900179-5'-UTR,CDS,intron-Distal4.067345.65086HepG2BCLAF1
    chr25590018455900215-5'-UTR,CDS,intron-Distal,intron-Proximal4.415548.80935HepG2BCLAF1
    chr25589916555899231-5'-UTR,CDS,intron-Distal,intron-Proximal4.104395.63851K562SF3B4
    chr25589414655894205-5'-UTR,CDS,intron-Distal3.875688.08603HepG2BCLAF1
    chr25592090355920973-5'-UTR,CDS,intron-Distal,intron-Proximal4.437634.66602K562DDX3X
    chr25592089955920962-5'-UTR,CDS,intron-Distal,intron-Proximal3.634715.01580HepG2DDX3X
    chr25591475555914817-CDS,intron-Distal,intron-Proximal5.294904.02817HepG2PRPF8
    chr25591349755913572-CDS,intron-Distal,intron-Proximal5.434964.02817HepG2PRPF8
    chr25591468955914834-CDS,intron-Distal,intron-Proximal4.263657.35008K562PRPF8
    chr25591478055914825-CDS,intron-Distal3.223456.00907HepG2PPIG
    chr25587242255872474-intron-Distal,intron-Proximal3.9950810.32093HepG2PRPF8
    chr25590563955905703-intron-Distal5.821338.53168HepG2DKC1
    chr25589392955894005-intron-Distal3.667957.05055K562PRPF8
    chr25588353255883620-intron-Distal,intron-Proximal4.251805.25174K562KHSRP
    chr25589401055894083-intron-Distal,intron-Proximal4.270329.20471K562KHSRP
    chr25588363255883707-intron-Distal3.770073.26999K562KHSRP
    chr25590605855906169-intron-Distal4.0175916.21812K562KHSRP
    chr25588890055888971-intron-Distal3.296946.57673K562KHSRP
    chr25587205755872154-intron-Distal4.023434.37030K562KHSRP
    chr25588899455889086-intron-Distal,intron-Proximal3.670305.61949K562KHSRP
    chr25591340255913494-intron-Distal,intron-Proximal3.791884.75435K562EFTUD2
    chr25587243555872474-intron-Distal,intron-Proximal4.2636823.23805K562AQR
    chr25589251155892592-intron-Distal3.597328.77805K562KHSRP
    chr25587242255872435-intron-Distal,intron-Proximal3.281023.67691K562AQR
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for PNPT1 is not avaliable on ENCORE database.



    Diffrential Expression
    • 1,608 differentially expressed genes after Knockdown/Knockout PNPT1 protein.  





    • 112 RBPs can affect the levels of PNPT1.  







    1,608 differentially expressed genes after Knockdown/Knockout PNPT1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 1,608 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    TFPIENSG00000003436.1020920.1060013615.217400.619604.157702.29410HepG2PNPT1
    ACSM3ENSG00000005187.7601.525801090.21560-0.857906.287504.03890HepG2PNPT1
    ITGA3ENSG00000005884.135.7149034.97740-2.613605.095103.06430HepG2PNPT1
    TMEM98ENSG00000006042.7506.23670804.63520-0.668503.835602.04580HepG2PNPT1
    CX3CL1ENSG00000006210.62173.887101475.377600.559103.329401.66580HepG2PNPT1
    MAP3K9ENSG00000006432.11541.53470815.54870-0.590703.062401.46290HepG2PNPT1
    PROM1ENSG00000007062.7255.36700554.05330-1.117504.119402.25860HepG2PNPT1
    RHOBTB2ENSG00000008853.12104.97450194.46440-0.889503.693201.92960HepG2PNPT1
    MASP2ENSG00000009724.1213.7769043.31220-1.652503.405901.70850HepG2PNPT1
    MAP4K3ENSG00000011566.104750.892903257.615500.544303.225501.58300HepG2PNPT1
    CYP24A1ENSG00000019186.5976.61720442.175801.143106.098903.88900HepG2PNPT1
    PLEKHB1ENSG00000021300.9391.11830934.41500-1.2565011.665308.85020HepG2PNPT1
    CPS1ENSG00000021826.10346.19500722.09160-1.060608.316105.81300HepG2PNPT1
    SNAPC1ENSG00000023608.4393.09980192.442801.030406.385004.12970HepG2PNPT1
    BTN3A1ENSG00000026950.12252.03130412.45780-0.710603.564601.83560HepG2PNPT1
    SH3YL1ENSG00000035115.17702.007001064.66000-0.600803.391401.70020HepG2PNPT1
    MAT2BENSG00000038274.12379.15830612.24640-0.691303.870402.06880HepG2PNPT1
    VCANENSG00000038427.111376.126803055.87450-1.151006.819404.50170HepG2PNPT1
    FAM65CENSG00000042062.719.150202.616102.871703.290001.63410HepG2PNPT1
    AIFM2ENSG00000042286.101097.56580457.581001.2621012.292109.34790HepG2PNPT1
    NOP16ENSG00000048162.15453.67700263.473200.783904.307902.41710HepG2PNPT1
    FAM120AENSG00000048828.122391.847001615.676000.565903.352001.68300HepG2PNPT1
    KITLGENSG00000049130.9113.14100279.98610-1.307208.308805.81300HepG2PNPT1
    ADAMTS6ENSG00000049192.10940.10080599.901000.648003.685401.92290HepG2PNPT1
    RCN1ENSG00000049449.4585.19270981.59170-0.746203.594101.86020HepG2PNPT1
    ITIH1ENSG00000055957.6503.00140282.332200.833104.925502.93550HepG2PNPT1
    GYG2ENSG00000056998.14145.93140302.83940-1.053304.289102.40270HepG2PNPT1
    MXD1ENSG00000059728.6771.30150488.493700.658903.672701.91450HepG2PNPT1
    SLC2A3ENSG00000059804.114430.8637014067.84550-1.666706.011103.80420HepG2PNPT1
    FAM107BENSG00000065809.91257.31450835.974800.588703.357101.68700HepG2PNPT1
    PPP2R5AENSG00000066027.72186.512301402.914500.640104.058702.21000HepG2PNPT1
    TNFRSF1AENSG00000067182.31750.272301191.391700.554803.190501.55640HepG2PNPT1
    TROENSG00000067445.16410.23630780.44690-0.927806.598004.32880HepG2PNPT1
    WIPI1ENSG00000070540.81267.35390839.704500.593803.399501.70500HepG2PNPT1
    SLC12A3ENSG00000070915.553.06600187.44860-1.820603.827302.03980HepG2PNPT1
    MAP4K4ENSG00000071054.116770.903509971.68300-0.558503.504301.79050HepG2PNPT1
    GSDMBENSG00000073605.144603.863202956.961100.638604.285302.40040HepG2PNPT1
    NTN4ENSG00000074527.796.91250202.39390-1.062404.994702.98550HepG2PNPT1
    TUBE1ENSG00000074935.9517.77520310.769000.736403.972202.14340HepG2PNPT1
    FOSL2ENSG00000075426.74059.364002448.122500.729503.712901.94550HepG2PNPT1
    MOCOSENSG00000075643.5838.11640459.926600.865605.911703.72290HepG2PNPT1
    SEC31BENSG00000075826.12180.15680294.72090-0.710103.185001.55170HepG2PNPT1
    MCAMENSG00000076706.10842.114801432.84930-0.766805.325303.24040HepG2PNPT1
    MBNL3ENSG00000076770.1013566.065408843.246000.617304.103002.24620HepG2PNPT1
    NFKB2ENSG00000077150.13491.93290291.737300.753703.166001.53810HepG2PNPT1
    CPB2ENSG00000080618.9738.997601525.29440-1.045409.425206.79040HepG2PNPT1
    ARG2ENSG00000081181.32705.717501849.772500.548603.219401.58040HepG2PNPT1
    CADPS2ENSG00000081803.11285.64570516.72490-0.855205.275103.20600HepG2PNPT1
    HALENSG00000084110.6385.78940627.13220-0.701003.382501.69540HepG2PNPT1
    WNT11ENSG00000085741.84.6941025.57760-2.446003.564301.83560HepG2PNPT1
    HSD17B2ENSG00000086696.61622.74440785.603501.046509.326406.72310HepG2PNPT1
    PGS1ENSG00000087157.14856.60710559.880600.613403.357801.68700HepG2PNPT1
    MMP2ENSG00000087245.8139.09520339.02760-1.285308.793206.23340HepG2PNPT1
    SH3BP2ENSG00000087266.112122.135801257.449000.754905.494903.37380HepG2PNPT1
    COQ9ENSG00000088682.9667.74540446.954100.579102.894701.33560HepG2PNPT1
    PEBP1ENSG00000089220.49081.690205578.405400.703005.222903.16480HepG2PNPT1
    AARSENSG00000090861.119707.213405885.986500.721705.469203.35550HepG2PNPT1
    PLEKHG2ENSG00000090924.10194.70090352.57860-0.856704.399802.49550HepG2PNPT1
    SEL1L3ENSG00000091490.635.5153099.61860-1.488005.570403.43400HepG2PNPT1
    SEMA6AENSG00000092421.12387.10750631.05130-0.705003.941702.12160HepG2PNPT1
    TYRO3ENSG00000092445.7548.95370834.50460-0.604203.219601.58040HepG2PNPT1
    TBX15ENSG00000092607.9182.5919065.722401.474104.270902.38890HepG2PNPT1
    TGFB2ENSG00000092969.734.42620107.40210-1.641406.737504.43520HepG2PNPT1
    PGCENSG00000096088.121179.012902709.07070-1.2002011.772908.91890HepG2PNPT1
    PCSK5ENSG00000099139.949.76640121.52070-1.288005.031903.01320HepG2PNPT1
    TSPAN15ENSG00000099282.558.88130122.12070-1.052403.654201.90520HepG2PNPT1
    GADD45BENSG00000099860.4790.37840380.097001.056103.087601.48120HepG2PNPT1
    YPEL1ENSG00000100027.1057.01260132.07720-1.212003.289001.63400HepG2PNPT1
    POLR2FENSG00000100142.10600.45220395.555800.602103.052401.45700HepG2PNPT1
    RAB36ENSG00000100228.81.3946019.79940-3.827604.462402.54260HepG2PNPT1
    HMOX1ENSG00000100292.12196.51370389.83710-0.988205.975603.77570HepG2PNPT1
    FOXRED2ENSG00000100350.10181.91680341.15730-0.907204.868702.89150HepG2PNPT1
    UPK3AENSG00000100373.513.8773041.18250-1.569302.951801.38030HepG2PNPT1
    COCHENSG00000100473.11933.903501694.49450-0.859506.718304.42360HepG2PNPT1
    HIF1AENSG00000100644.125849.761003206.049100.867507.381904.97690HepG2PNPT1
    TUBB1ENSG00000101162.362.25330410.73340-2.7220013.0841010.04720HepG2PNPT1
    TRIB3ENSG00000101255.65286.290301800.524701.5537016.3420012.98290HepG2PNPT1
    JAG1ENSG00000101384.75285.188803128.939600.756205.788903.61150HepG2PNPT1
    ANKRD12ENSG00000101745.111963.911801257.605500.643004.038402.19550HepG2PNPT1
    KCND1ENSG00000102057.5188.8897092.970301.022603.174801.54470HepG2PNPT1
    SYTL4ENSG00000102362.1121.9755067.79800-1.625304.749102.79820HepG2PNPT1
    DGKHENSG00000102780.1212.9611045.85260-1.822803.610501.87460HepG2PNPT1
    PLLPENSG00000102934.51131.74670662.677600.772105.285103.21150HepG2PNPT1
    NDRG4ENSG00000103034.10146.16440273.35940-0.903204.373102.47180HepG2PNPT1
    COTL1ENSG00000103187.664.46370186.77820-1.534808.674306.13480HepG2PNPT1
    CORO2BENSG00000103647.822.2126060.49010-1.445303.641301.89680HepG2PNPT1
    KIAA1199ENSG00000103888.11261.10990151.357700.786603.514101.79940HepG2PNPT1
    SPAG1ENSG00000104450.8336.12350204.464100.717003.294101.63690HepG2PNPT1
    TNFRSF10AENSG00000104689.5260.80860152.281900.776103.384201.69540HepG2PNPT1
    TIMM44ENSG00000104980.3686.54160436.565300.653003.618801.88090HepG2PNPT1
    SLC1A5ENSG00000105281.85748.314903439.654100.740805.705503.53670HepG2PNPT1
    SULT2A1ENSG00000105398.31598.449802504.68070-0.648004.259102.38280HepG2PNPT1
    HAMPENSG00000105697.330.37500137.80130-2.181607.998405.53140HepG2PNPT1
    PON2ENSG00000105854.81260.433702250.52070-0.836304.781602.82040HepG2PNPT1
    METENSG00000105976.102805.456201871.359500.584003.529901.81020HepG2PNPT1
    HOXA3ENSG00000105997.1890.17680165.82200-0.878803.317701.65580HepG2PNPT1
    LFNGENSG00000106003.824.9334061.50620-1.302703.157801.53340HepG2PNPT1
    GRB10ENSG00000106070.13656.537001141.29010-0.797705.615903.46890HepG2PNPT1
    STX1AENSG00000106089.7299.92070171.740900.804203.882102.07530HepG2PNPT1
    GARSENSG00000106105.95370.907703731.427200.525303.094601.48400HepG2PNPT1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    112 RBPs can affect the gene expression of PNPT1 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    PNPT1ENSG00000138035.101278.005501074.525000.250102.664202.06590HepG2ACO1
    PNPT1ENSG00000138035.102513.606501310.242100.9398011.6422010.62390HepG2AKAP1
    PNPT1ENSG00000138035.10654.947501144.22890-0.804903.403902.41010HepG2BCLAF1
    PNPT1ENSG00000138035.102306.012001884.437600.291202.363901.80590HepG2BOP1
    PNPT1ENSG00000138035.101857.581801428.475500.378803.408402.56340HepG2CALR
    PNPT1ENSG00000138035.10685.288901730.02780-1.3360028.3280026.43600HepG2CPSF6
    PNPT1ENSG00000138035.101382.111401757.87830-0.347004.374403.47620HepG2DAZAP1
    PNPT1ENSG00000138035.101179.15230957.029500.301002.230301.42080HepG2DDX24
    PNPT1ENSG00000138035.101673.959601255.081400.415403.136202.47480HepG2DDX3X
    PNPT1ENSG00000138035.10735.170601078.21490-0.552504.131303.38820HepG2DDX6
    PNPT1ENSG00000138035.10810.245701032.98730-0.350402.574001.62760HepG2DHX30
    PNPT1ENSG00000138035.10769.465401028.04080-0.418004.858104.00720HepG2DKC1
    PNPT1ENSG00000138035.10850.473101071.00030-0.332603.245402.48820HepG2DNAJC21
    PNPT1ENSG00000138035.10745.227901061.57840-0.510508.623407.54840HepG2DNAJC2
    PNPT1ENSG00000138035.10640.862501036.44070-0.693606.726105.82820HepG2EIF2S1
    PNPT1ENSG00000138035.101027.63520796.453800.367602.644801.75900HepG2EIF3D
    PNPT1ENSG00000138035.101468.895601115.230000.397302.126001.52020HepG2EIF4B
    PNPT1ENSG00000138035.101193.747201661.08430-0.476605.016303.94010HepG2EIF4G2
    PNPT1ENSG00000138035.101165.962901961.15260-0.750208.673207.58220HepG2GPKOW
    PNPT1ENSG00000138035.10650.162901081.26120-0.733809.186308.10880HepG2HNRNPA1
    PNPT1ENSG00000138035.10914.371801202.71490-0.395403.232502.48960HepG2HNRNPC
    PNPT1ENSG00000138035.101148.235201794.40060-0.644108.040606.89640HepG2HNRNPF
    PNPT1ENSG00000138035.101458.993901085.673900.426303.653302.85940HepG2HNRNPK
    PNPT1ENSG00000138035.101064.279201601.39250-0.589509.367708.19830HepG2HNRNPL
    PNPT1ENSG00000138035.101115.511301871.56120-0.746509.725308.62490HepG2HNRNPLL
    PNPT1ENSG00000138035.101012.772801194.76240-0.238402.270501.71620HepG2HNRNPU
    PNPT1ENSG00000138035.101017.144101766.99460-0.796809.439408.17460HepG2IGF2BP1
    PNPT1ENSG00000138035.10764.14400982.27830-0.362304.536403.24220HepG2KIF1C
    PNPT1ENSG00000138035.10814.224001156.12500-0.505804.086803.29190HepG2MAGOH
    PNPT1ENSG00000138035.101846.889601162.578200.667706.605205.66270HepG2MATR3
    PNPT1ENSG00000138035.101147.71970833.597200.461202.527601.51960HepG2METAP2
    PNPT1ENSG00000138035.101209.864401908.68070-0.657704.862403.55400HepG2MTPAP
    PNPT1ENSG00000138035.101424.437701743.09090-0.291301.983701.33500HepG2NOL12
    PNPT1ENSG00000138035.10566.53720972.13720-0.779002.643201.77990HepG2PABPC1
    PNPT1ENSG00000138035.101481.69610988.150200.5843011.3133010.22020HepG2PCBP1
    PNPT1ENSG00000138035.10361.12930953.90600-1.401306.696104.40890HepG2PNPT1
    PNPT1ENSG00000138035.10853.592501065.63060-0.320103.013402.24770HepG2PPIL4
    PNPT1ENSG00000138035.101245.778901005.506600.309003.215602.63450HepG2PTBP1
    PNPT1ENSG00000138035.101108.893401663.84140-0.585405.492204.68860HepG2PUF60
    PNPT1ENSG00000138035.10754.662901094.48000-0.536308.829007.83260HepG2PUS1
    PNPT1ENSG00000138035.101289.651601088.931400.244001.942701.40450HepG2QKI
    PNPT1ENSG00000138035.101784.954701124.907100.666003.964503.12590HepG2RAVER1
    PNPT1ENSG00000138035.101400.047701932.67570-0.465104.520503.67620HepG2RPLP0
    PNPT1ENSG00000138035.10959.61790774.937400.308302.274701.71150HepG2RPS19
    PNPT1ENSG00000138035.101562.149401156.699900.433403.776802.51110HepG2RPS5
    PNPT1ENSG00000138035.101056.52920777.845100.441703.584102.51010HepG2SERBP1
    PNPT1ENSG00000138035.101308.542001046.814100.321903.630402.96620HepG2SF3B4
    PNPT1ENSG00000138035.101107.542301595.14470-0.526309.056907.90210HepG2SLBP
    PNPT1ENSG00000138035.101509.903801240.771000.283103.874603.13410HepG2SMN1
    PNPT1ENSG00000138035.102022.322001092.666900.8881027.8303026.67520HepG2SRSF1
    PNPT1ENSG00000138035.101055.330101762.86230-0.7402011.4010010.15280HepG2SRSF7
    PNPT1ENSG00000138035.101087.926001664.20000-0.6132013.3739012.41540HepG2SSB
    PNPT1ENSG00000138035.10778.695901288.71080-0.726802.771902.09440HepG2SUPV3L1
    PNPT1ENSG00000138035.101525.97390982.186000.6356011.3361010.32390HepG2TAF15
    PNPT1ENSG00000138035.101346.745101824.10970-0.437704.157003.29060HepG2TARDBP
    PNPT1ENSG00000138035.10686.816201160.89090-0.7572012.1186011.20090HepG2TIAL1
    PNPT1ENSG00000138035.10952.787801169.35060-0.295503.213102.47140HepG2UPF1
    PNPT1ENSG00000138035.101429.117301201.955500.249602.433801.44050HepG2UTP18
    PNPT1ENSG00000138035.101793.957601128.967500.668004.650103.90550HepG2UTP3
    PNPT1ENSG00000138035.101762.807201237.039100.510903.245102.09460HepG2XRCC6
    PNPT1ENSG00000138035.10846.249101268.58950-0.584101.944001.32830HepG2XRN2
    PNPT1ENSG00000138035.10818.328301063.32040-0.377804.860404.01180HepG2ZC3H8
    PNPT1ENSG00000138035.102206.641101692.921300.382202.776601.59500K562AARS
    PNPT1ENSG00000138035.101206.387703189.51620-1.4026015.8409014.59370K562AQR
    PNPT1ENSG00000138035.101511.940702029.60040-0.424803.218301.78400K562BCCIP
    PNPT1ENSG00000138035.101351.462501961.57980-0.537504.983803.68010K562BCLAF1
    PNPT1ENSG00000138035.101116.798602069.72490-0.890104.620003.48150K562BOP1
    PNPT1ENSG00000138035.101854.243402637.02570-0.508104.967702.98880K562BUD13
    PNPT1ENSG00000138035.10664.15820860.97520-0.374402.498001.50650K562CCAR1
    PNPT1ENSG00000138035.102071.539103622.43070-0.806304.963503.48780K562CNOT7
    PNPT1ENSG00000138035.102640.974003195.02330-0.274803.395102.16300K562CPEB4
    PNPT1ENSG00000138035.10874.157002200.86940-1.332107.868006.53280K562CPSF6
    PNPT1ENSG00000138035.101863.648402196.51950-0.237102.767101.55460K562DDX21
    PNPT1ENSG00000138035.10863.334601217.72860-0.496205.429703.90170K562DDX3X
    PNPT1ENSG00000138035.104154.451903306.033000.329506.060205.14810K562DDX47
    PNPT1ENSG00000138035.10936.921801234.62260-0.398104.497402.69630K562DDX6
    PNPT1ENSG00000138035.102456.085701702.032700.529009.818107.95830K562DKC1
    PNPT1ENSG00000138035.10970.488701548.49670-0.674107.719106.12480K562EFTUD2
    PNPT1ENSG00000138035.10945.944401337.59950-0.499807.890705.81790K562EIF2S1
    PNPT1ENSG00000138035.101493.388602702.74550-0.855808.992907.80850K562EIF2S2
    PNPT1ENSG00000138035.102056.525801368.992700.5870010.599009.03590K562EIF3G
    PNPT1ENSG00000138035.10856.573701272.23690-0.570706.356005.12070K562EIF4A3
    PNPT1ENSG00000138035.101641.084602721.34160-0.7297010.575708.79460K562FIP1L1
    PNPT1ENSG00000138035.101161.007102239.02640-0.947505.253604.06920K562FMR1
    PNPT1ENSG00000138035.101009.000901897.64410-0.911305.284503.97660K562FTO
    PNPT1ENSG00000138035.102227.945801323.074700.7517019.1515017.67190K562FXR1
    PNPT1ENSG00000138035.101892.175801470.103700.364002.128801.52030K562G3BP2
    PNPT1ENSG00000138035.10966.112302101.41510-1.121106.825205.57970K562GPKOW
    PNPT1ENSG00000138035.102154.764303602.09440-0.741305.997304.87990K562GRSF1
    PNPT1ENSG00000138035.101485.651302070.76720-0.479106.352004.76690K562HNRNPA1
    PNPT1ENSG00000138035.10810.283701853.47980-1.193707.880006.92160K562HNRNPC
    PNPT1ENSG00000138035.101053.679401654.68230-0.651103.582402.26940K562HNRNPF
    PNPT1ENSG00000138035.102333.616501672.114500.480804.619102.99010K562HNRNPK
    PNPT1ENSG00000138035.101632.411302293.14300-0.490308.164106.63620K562HNRNPU
    PNPT1ENSG00000138035.101257.195601673.67040-0.412802.814401.77890K562IGF2BP2
    PNPT1ENSG00000138035.101278.025301702.52180-0.413804.035702.53620K562IGF2BP3
    PNPT1ENSG00000138035.101118.826301794.01500-0.681203.415702.36510K562KRR1
    PNPT1ENSG00000138035.101160.425502051.16220-0.821804.487103.35490K562METAP2
    PNPT1ENSG00000138035.102929.976004307.19890-0.555904.248202.85110K562MSI2
    PNPT1ENSG00000138035.101518.448702348.47330-0.6291016.7659015.00490K562MTPAP
    PNPT1ENSG00000138035.101018.489901270.38980-0.318802.746501.52310K562NCBP2
    PNPT1ENSG00000138035.101685.722402609.34040-0.6303023.7209021.85950K562NSUN2
    PNPT1ENSG00000138035.10940.037802042.54960-1.119604.474403.13290K562PABPN1
    PNPT1ENSG00000138035.101413.624201852.46220-0.390002.983802.12070K562PCBP3
    PNPT1ENSG00000138035.101010.361204152.02320-2.0389099.2796095.64110K562PNPT1
    PNPT1ENSG00000138035.102338.145003089.08500-0.401803.710802.73910K562PPIG
    PNPT1ENSG00000138035.101097.872201661.70600-0.598002.459501.61270K562PSIP1
    PNPT1ENSG00000138035.102156.315401709.323900.335003.460002.72800K562PTBP1
    PNPT1ENSG00000138035.103668.737604594.86770-0.324704.617303.36730K562PUM2
    PNPT1ENSG00000138035.10990.743501395.78490-0.494502.760501.43200K562RBM25
    PNPT1ENSG00000138035.101181.187902513.04540-1.089204.446402.38310K562RBM39
    PNPT1ENSG00000138035.101577.219101266.065900.316902.630001.57740K562SAFB
    PNPT1ENSG00000138035.101040.425401868.65440-0.844802.574201.43020K562SF1
    PNPT1ENSG00000138035.101781.281502574.78930-0.5315010.860009.31880K562SF3A3
    PNPT1ENSG00000138035.101262.482301998.05990-0.662303.186002.13990K562SF3B1
    PNPT1ENSG00000138035.10912.213901436.67370-0.655302.611401.62390K562SRFBP1
    PNPT1ENSG00000138035.102234.847602637.93050-0.239203.593802.54330K562SRPK2
    PNPT1ENSG00000138035.101125.778801582.41560-0.491205.058603.55890K562SRSF5
    PNPT1ENSG00000138035.101358.827801960.33520-0.528709.259307.10670K562SRSF7
    PNPT1ENSG00000138035.101242.307402566.44480-1.046704.150102.25380K562SUPT6H
    PNPT1ENSG00000138035.10986.737501459.20150-0.564404.857403.47920K562SUPV3L1
    PNPT1ENSG00000138035.102093.511301425.202800.554708.730907.27280K562SYNCRIP
    PNPT1ENSG00000138035.10893.958901695.97980-0.9238014.7545012.86580K562TARDBP
    PNPT1ENSG00000138035.101071.579801635.93690-0.610408.889207.30560K562TIA1
    PNPT1ENSG00000138035.10813.302001598.36090-0.974705.995104.56330K562TIAL1
    PNPT1ENSG00000138035.101274.580401605.09650-0.332602.495501.47010K562TRA2A
    PNPT1ENSG00000138035.101100.732901697.33750-0.624803.193202.16060K562TRIM56
    PNPT1ENSG00000138035.102443.349403184.08580-0.382003.036701.57350K562TRIP6
    PNPT1ENSG00000138035.102364.815802883.11330-0.285903.609702.15040K562TROVE2
    PNPT1ENSG00000138035.103722.795604970.48200-0.417004.790902.95250K562UBE2L3
    PNPT1ENSG00000138035.101037.057201544.26780-0.574405.711104.19720K562UCHL5
    PNPT1ENSG00000138035.101591.013102766.74090-0.7982027.8356025.86570K562UPF1
    PNPT1ENSG00000138035.101378.274102367.40970-0.7804015.1127013.02760K562WDR3
    PNPT1ENSG00000138035.102862.525503778.06760-0.400403.157101.76590K562WRN
    PNPT1ENSG00000138035.101182.858001572.31140-0.410603.201001.86850K562XRN2
    PNPT1ENSG00000138035.102242.655703593.54920-0.680205.832604.50590K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for PNPT1 is not available on ENCORE database.





    25 RBPs can affect the splicing of PNPT1 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEPNPT1ENSG00000138035.10chr2-558702925587034855867761558678405587045355870560-0.091000.000040.00134excludedK562SF3B4
    SEPNPT1ENSG00000138035.10chr2-559135045591357955912077559121835592079755920958-0.234000.000070.04609excludedK562TIA1
    SEPNPT1ENSG00000138035.10chr2-558834395588350655883265558833555588729155887328-0.101000.002800.04773excludedHepG2U2AF1
    SEPNPT1ENSG00000138035.10chr2-559000275590021455899129558991815590681655906930-0.127000.000000.00000excludedHepG2U2AF2
    SEPNPT1ENSG00000138035.10chr2-559078465590789455906816559069305590798955908053-0.131000.000410.00655excludedHepG2U2AF2
    SEPNPT1ENSG00000138035.10chr2-558717715587190655870453558705605587248355872623-0.088000.004120.03966excludedK562AQR
    SEPNPT1ENSG00000138035.10chr2-559000275590021455899129558991815590681655906930-0.117000.000000.00009excludedK562AQR
    SEPNPT1ENSG00000138035.10chr2-559078465590789455906816559069305590798955908053-0.115000.000000.00005excludedK562AQR
    SEPNPT1ENSG00000138035.10chr2-558949965589512955894125558942285589845355898511-0.055000.002790.02882excludedK562AQR
    SEPNPT1ENSG00000138035.10chr2-558834395588350655883265558833555588729155887328-0.076000.000090.00158excludedK562AQR
    SEPNPT1ENSG00000138035.10chr2-559135045591357955912077559121835592079755920958-0.153000.001130.01352excludedK562AQR
    SEPNPT1ENSG00000138035.10chr2-558702925587034855867761558678635587045355870599-0.058000.000230.00347excludedK562AQR
    SEPNPT1ENSG00000138035.10chr2-559000275590021455899129558991815590681655906930-0.062000.009040.09745excludedK562PUS1
    SEPNPT1ENSG00000138035.10chr2-558717715587185555870453558705605587248355872567-0.058000.001310.02140excludedK562PUS1
    SEPNPT1ENSG00000138035.10chr2-559135045591357955912077559121835592079755920958-0.243000.006590.07668excludedK562PUS1
    SEPNPT1ENSG00000138035.10chr2-559078465590789455906816559069305590798955908053-0.111000.002340.04970excludedHepG2SRSF1
    SEPNPT1ENSG00000138035.10chr2-558949965589512955894125558942285589845355898511-0.069000.003770.08497excludedHepG2SF3A3
    SEPNPT1ENSG00000138035.10chr2-559000275590021455899129558991815590681655906930-0.081000.007190.09556excludedK562U2AF2
    SEPNPT1ENSG00000138035.10chr2-559078465590789455906816559069305590798955908053-0.100000.000680.01452excludedK562U2AF2
    SEPNPT1ENSG00000138035.10chr2-558949965589509355894125558942285589845355898511-0.056000.000590.01287excludedK562U2AF2
    SEPNPT1ENSG00000138035.10chr2-559135045591357955912077559121835592079755920958-0.174000.000900.03471excludedK562TARDBP
    SEPNPT1ENSG00000138035.10chr2-558717715587185555870453558705605587248355872567-0.060000.000630.01911excludedK562RBM15
    SEPNPT1ENSG00000138035.10chr2-558717715587185555870453558705605587248355872567-0.068000.000260.00954excludedK562AGGF1
    A3SSPNPT1ENSG00000138035.10chr2-5587045355870560558704535587054755871771558718550.073000.000180.05188longerK562DROSHA
    A3SSPNPT1ENSG00000138035.10chr2-5588728655887426558872865588732855889090558891610.075000.000000.00004longerK562AQR
    A3SSPNPT1ENSG00000138035.10chr2-5587177155871906558717715587185555872483558726230.059000.000020.00023longerK562AQR
    A3SSPNPT1ENSG00000138035.10chr2-5588203455882121558820345588208855883265558833550.117000.000000.00000longerK562AQR
    A3SSPNPT1ENSG00000138035.10chr2-5586776155867883558677615586784055870292558703480.132000.000000.00000longerK562AQR
    A5SSPNPT1ENSG00000138035.10chr2-558717715587256755872483558725675587045355870560-0.088000.003950.05983shorterK562AQR
    A5SSPNPT1ENSG00000138035.10chr2-559078465590805355907989559080535590681655906930-0.196000.000000.00016shorterK562AQR
    A5SSPNPT1ENSG00000138035.10chr2-558717715587256755872483558725675587045355870560-0.126000.000310.03096shorterK562AGGF1
    A5SSPNPT1ENSG00000138035.10chr2-559078465590805355907989559080535590681655906930-0.206000.000500.02287shorterHepG2U2AF2
    A5SSPNPT1ENSG00000138035.10chr2-558717715587256755872483558725675587045355870560-0.115000.000640.05576shorterK562RBM15
    A5SSPNPT1ENSG00000138035.10chr2-559078465590805355907989559080535590681655906930-0.163000.001910.09365shorterK562U2AF2
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.070000.000220.03198includedHepG2DDX59
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.113000.000010.00063includedHepG2PCBP2
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.095000.000010.00007includedK562PUS1
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.167000.000000.00005includedHepG2U2AF2
    RIPNPT1ENSG00000138035.10chr2-558717715587256755871771558718555587248355872567-0.056000.000010.00036excludedHepG2SRSF1
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.129000.000090.00176includedHepG2QKI
    RIPNPT1ENSG00000138035.10chr2-5590784655908053559078465590789455907989559080530.149000.003210.03500includedHepG2QKI
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.077000.000080.00131includedK562AKAP8L
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.109000.000440.00612includedHepG2TAF15
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.077000.002400.03965includedHepG2G3BP1
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.078000.003160.05205includedK562U2AF1
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.101000.000100.00233includedK562U2AF2
    RIPNPT1ENSG00000138035.10chr2-5590784655908053559078465590789455907989559080530.177000.001430.01910includedHepG2NCBP2
    RIPNPT1ENSG00000138035.10chr2-5590784655908053559078465590789455907989559080530.081000.010560.07955includedHepG2RBM22
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.068000.000160.06716includedHepG2IGF2BP1
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.083000.000960.01302includedHepG2HNRNPK
    RIPNPT1ENSG00000138035.10chr2-5587177155872567558717715587185555872483558725670.138000.000000.00000includedK562AQR
    RIPNPT1ENSG00000138035.10chr2-558717715587256755871771558718555587248355872567-0.063000.000050.00612excludedHepG2LARP4
    RIPNPT1ENSG00000138035.10chr2-558717715587256755871771558718555587248355872567-0.063000.000000.00017excludedK562PTBP1
    RIPNPT1ENSG00000138035.10chr2-558717715587256755871771558718555587248355872567-0.059000.000260.00632excludedK562FXR1
    MXEPNPT1ENSG00000138035.10chr2-5586776155867840558702925587034855864686558647345587045355870560-0.133000.000360.009122includedK562DROSHA
    MXEPNPT1ENSG00000138035.10chr2-55883439558835065588729155887455558832655588335555889090558891610.083000.000050.000631includedK562AQR
    MXEPNPT1ENSG00000138035.10chr2-55883439558835065588729155887426558832655588335555889090558891610.091000.000020.000321includedK562AQR
    MXEPNPT1ENSG00000138035.10chr2-55883439558835065588729155887393558832655588335555889090558891610.083000.000010.000171includedK562AQR
    MXEPNPT1ENSG00000138035.10chr2-5590798955908053559109195591096955906816559069305591207755912183-0.159000.000070.000902includedK562AQR
    MXEPNPT1ENSG00000138035.10chr2-5590681655906930559079895590805355899129558991815591091955910969-0.085000.000000.000012includedK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for PNPT1 is not avaliable on ENCORE database.