POLR2F

General Information

Gene Name       : POLR2F
Gene ID             : ENSG00000100142.14
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: POLR2F)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878POLR2FENSG00000100142.1414.6259.0836.85ENCSR000AEF
HepG2POLR2FENSG00000100142.14208.15127.33167.74ENCSR985KAT
K562POLR2FENSG00000100142.14113.00113.24113.12ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for POLR2F is not avaliable on ENCORE database.



Proteins bound to RNA
  • POLR2F RNA is bound by 16 proteins.  







eCLIP assay for POLR2F is not avaliable on ENCORE database.





16 proteins are bound to POLR2F RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr223836363038363774+3'-UTR,CDS,intron-Distal,intron-Proximal3.561728.01683HepG2LARP4
chr223836316438363212+3'-UTR,CDS,intron-Proximal3.700765.00154HepG2AQR
chr223836359438363660+3'-UTR,CDS,intron-Distal,intron-Proximal5.7348210.44569K562AQR
chr223836319238363286+3'-UTR,intron-Distal,intron-Proximal3.996516.23016HepG2PRPF8
chr223836372138363797+3'-UTR,intron-Distal3.788377.23578K562PUM2
chr223836368038363717+3'-UTR,CDS,intron-Distal4.454577.06926K562PABPC4
chr223836317538363222+3'-UTR,CDS,intron-Proximal4.945565.26064K562AQR
chr223836366938363769+3'-UTR,CDS,intron-Distal3.904745.54968K562GEMIN5
chr223834973638349808+5'-UTR,CDS,intron-Distal3.261294.25476K562APOBEC3C
chr223835535238355484+5'-UTR,CDS,intron-Distal,intron-Proximal3.399823.53688K562PUM1
chr223834971938349804+5'-UTR,CDS,intron-Distal4.7545444.46328HepG2DDX3X
chr223835277938352850+5'-UTR,CDS,intron-Proximal3.871296.32804HepG2DDX55
chr223835535238355450+5'-UTR,CDS,intron-Distal,intron-Proximal4.610168.02508K562ZNF800
chr223834972938349805+5'-UTR,CDS,intron-Distal5.710469.90767K562GEMIN5
chr223834971338349814+5'-UTR,CDS,intron-Distal5.3777577.61706K562DDX3X
chr223835277938352850+5'-UTR,CDS,intron-Proximal5.242787.33003K562UCHL5
chr223834971838349815+5'-UTR,CDS,intron-Distal,intron-Proximal3.136166.43549K562DDX55
chr223835535038355436+5'-UTR,CDS,intron-Distal,intron-Proximal3.836177.28917K562GRWD1
chr223835277938352855+5'-UTR,CDS,intron-Proximal3.369324.71815K562DDX55
chr223835542838355485+5'-UTR,CDS,intron-Distal,intron-Proximal3.890827.50845HepG2GRWD1
chr223835280238352849+5'-UTR,CDS4.083265.02854K562PABPC4
chr223835277938352856+5'-UTR,CDS,intron-Proximal3.606478.28887HepG2LARP4
chr223835277538352851+5'-UTR,CDS,intron-Proximal4.314193.64914K562APOBEC3C
chr223834974238349810+5'-UTR,CDS,intron-Distal4.082705.76765HepG2LARP4
chr223835541238355482+5'-UTR,CDS,intron-Distal4.2468110.09915K562YBX3
chr223835534938355437+5'-UTR,CDS,intron-Distal,intron-Proximal4.794784.42734K562UCHL5
chr223835278138352851+5'-UTR,CDS,intron-Proximal3.762165.36496K562ZNF800
chr223835535138355428+CDS,intron-Distal,intron-Proximal3.5045510.90420HepG2GRWD1
chr223835537338355426+CDS,intron-Distal3.849298.26434HepG2LARP4
chr223835535138355373+CDS,intron-Distal,intron-Proximal3.436025.55036HepG2LARP4
chr223842144538421519+intron-Distal,intron-Proximal3.699664.90485K562AGGF1
chr223836356738363608+intron-Distal,intron-Proximal4.028503.82050HepG2SF3B4
chr223842135638421445+intron-Distal3.396425.23756K562AGGF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for POLR2F is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for POLR2F is not available on ENCORE database.

  • 86 RBPs can affect the levels of POLR2F.  








The Knockdown/knockout RNA-Seq assay for POLR2F is not available on ENCORE database.





86 RBPs can affect the gene expression of POLR2F :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
POLR2FENSG00000100142.10305.23860512.60600-0.747902.819601.73830HepG2AATF
POLR2FENSG00000100142.10341.87830663.07800-0.9557016.8155015.58380HepG2ACO1
POLR2FENSG00000100142.101093.083201405.37310-0.362602.146101.67130HepG2AKAP1
POLR2FENSG00000100142.10753.876901162.78880-0.625205.910104.78440HepG2ASCC1
POLR2FENSG00000100142.10932.408001095.09410-0.232002.093601.48090HepG2AUH
POLR2FENSG00000100142.10364.47200512.27040-0.491103.069602.35060HepG2CPSF6
POLR2FENSG00000100142.10242.68420525.22320-1.113904.057702.30240HepG2CSTF2T
POLR2FENSG00000100142.101002.43120799.389900.326403.870703.01770HepG2DAZAP1
POLR2FENSG00000100142.10730.278801156.57560-0.663305.804604.93910HepG2DDX6
POLR2FENSG00000100142.10237.36530520.60330-1.133104.861903.39210HepG2AGO1
POLR2FENSG00000100142.10703.800101111.64630-0.659506.174705.30830HepG2EIF2S1
POLR2FENSG00000100142.10418.89730644.96890-0.622606.105104.42150HepG2EIF2S2
POLR2FENSG00000100142.10729.344301196.20660-0.713805.392304.45420HepG2EIF4B
POLR2FENSG00000100142.10796.156201257.32760-0.6592012.3646011.24170HepG2ETF1
POLR2FENSG00000100142.10564.99010907.58920-0.683807.846406.55580HepG2FUBP3
POLR2FENSG00000100142.10796.532901239.69800-0.638206.319905.30030HepG2FXR1
POLR2FENSG00000100142.10562.469901149.84930-1.0316013.4202012.01500HepG2G3BP1
POLR2FENSG00000100142.10825.921301220.91150-0.563905.200403.96770HepG2G3BP2
POLR2FENSG00000100142.10416.45450580.67690-0.479602.710102.07480HepG2GPKOW
POLR2FENSG00000100142.10859.323101164.68230-0.438703.566302.77900HepG2HNRNPK
POLR2FENSG00000100142.10874.85910728.178300.264702.509901.86490HepG2HNRNPL
POLR2FENSG00000100142.10816.221301168.74250-0.517904.221603.40360HepG2IGF2BP2
POLR2FENSG00000100142.10565.430801097.03270-0.956203.637802.50930HepG2IGF2BP3
POLR2FENSG00000100142.10293.73520429.98930-0.549802.568001.30720HepG2ILF3
POLR2FENSG00000100142.10715.017701175.65660-0.717405.840404.33500HepG2KHSRP
POLR2FENSG00000100142.10453.10880788.81490-0.799806.018304.16230HepG2KRR1
POLR2FENSG00000100142.10588.151801240.13210-1.0762015.3262013.83970HepG2MAGOH
POLR2FENSG00000100142.10886.423801247.02580-0.492403.564702.85650HepG2MATR3
POLR2FENSG00000100142.10550.96170694.77660-0.334602.340301.59290HepG2MSI2
POLR2FENSG00000100142.10800.004901276.36200-0.674006.584305.62650HepG2NCBP2
POLR2FENSG00000100142.10747.57440403.180100.890705.672104.36650HepG2PABPC1
POLR2FENSG00000100142.10650.241801136.50760-0.805608.993507.71100HepG2PABPC4
POLR2FENSG00000100142.10640.719601091.20190-0.7682015.2025013.96460HepG2PCBP1
POLR2FENSG00000100142.10600.45220395.555800.602103.052401.45700HepG2PNPT1
POLR2FENSG00000100142.10542.77210380.023400.514204.555103.63190HepG2PPIL4
POLR2FENSG00000100142.10302.87130466.84870-0.624204.384003.39130HepG2PRPF8
POLR2FENSG00000100142.10508.095001110.32090-1.1278028.0216026.63430HepG2PTBP1
POLR2FENSG00000100142.101117.04440803.255500.475707.982107.08290HepG2PUM1
POLR2FENSG00000100142.10766.691801202.54300-0.649409.655608.58810HepG2QKI
POLR2FENSG00000100142.10840.699001050.89050-0.322002.698602.18480HepG2RBM22
POLR2FENSG00000100142.10772.393701091.37070-0.498705.201304.30370HepG2RBM25
POLR2FENSG00000100142.10630.697801235.69540-0.9703022.6529021.39780HepG2NELFE
POLR2FENSG00000100142.10544.810801150.85550-1.0789026.8433025.27330HepG2RECQL
POLR2FENSG00000100142.10297.77550415.62940-0.481102.258301.69690HepG2RPS19
POLR2FENSG00000100142.10533.04690379.447100.490304.583203.78830HepG2SAFB2
POLR2FENSG00000100142.10629.098501156.01940-0.8778018.6830017.36040HepG2SF3B4
POLR2FENSG00000100142.10904.69280725.549600.318303.370202.60880HepG2SLBP
POLR2FENSG00000100142.10608.42400442.523300.459204.716103.91320HepG2SMN1
POLR2FENSG00000100142.10927.979201186.93730-0.355104.356803.76950HepG2SRFBP1
POLR2FENSG00000100142.10655.978801206.62090-0.8793019.6453018.62700HepG2SRSF1
POLR2FENSG00000100142.10584.52390981.63910-0.7479014.2384013.16320HepG2SRSF9
POLR2FENSG00000100142.10663.364301030.53420-0.6355010.778409.89490HepG2SSB
POLR2FENSG00000100142.10446.00980602.72020-0.434402.106201.50570HepG2SUPV3L1
POLR2FENSG00000100142.10446.992601084.52170-1.2787031.0221029.41280HepG2TAF15
POLR2FENSG00000100142.10411.75720540.18440-0.391702.175201.52080HepG2TARDBP
POLR2FENSG00000100142.10543.40530996.56610-0.8749014.0430012.19420HepG2TIA1
POLR2FENSG00000100142.10600.42280417.700400.523404.029003.37390HepG2TRIM56
POLR2FENSG00000100142.10535.44180355.991700.588803.630502.76320HepG2UCHL5
POLR2FENSG00000100142.10573.24070690.09220-0.267602.090301.46920HepG2UPF1
POLR2FENSG00000100142.10898.68950593.314400.598903.949803.09050HepG2XRN2
POLR2FENSG00000100142.10352.40820519.27990-0.559303.916703.14090HepG2ZC3H8
POLR2FENSG00000100142.101077.16310675.094600.674007.048306.20310K562AGGF1
POLR2FENSG00000100142.10983.86640702.457100.486004.268103.45270K562AKAP8L
POLR2FENSG00000100142.10326.13610538.03390-0.722205.708204.44280K562BOP1
POLR2FENSG00000100142.10391.62610572.09080-0.546804.424803.43430K562CPSF6
POLR2FENSG00000100142.10764.478201022.22450-0.419205.024304.18250K562DDX47
POLR2FENSG00000100142.10703.839401036.47930-0.558407.665406.55620K562EIF2S2
POLR2FENSG00000100142.10509.29070383.043700.410902.707301.43550K562EWSR1
POLR2FENSG00000100142.101044.31580703.561600.569705.854404.58930K562FIP1L1
POLR2FENSG00000100142.10382.95480582.07650-0.604004.551903.45160K562FMR1
POLR2FENSG00000100142.10319.90050493.35700-0.625004.230303.07950K562FTO
POLR2FENSG00000100142.10193.51500276.96500-0.517302.790901.44370K562FUS
POLR2FENSG00000100142.10932.95400456.366701.0315020.1795018.65900K562FXR1
POLR2FENSG00000100142.1070.44460268.62980-1.931109.124907.68950K562G3BP2
POLR2FENSG00000100142.101684.178401381.282200.285902.367701.66700K562GRSF1
POLR2FENSG00000100142.10409.50890657.78310-0.683705.691404.86580K562HNRNPC
POLR2FENSG00000100142.10905.75020578.761000.646005.593404.20750K562HNRNPM
POLR2FENSG00000100142.10600.13880916.27470-0.610503.001001.51650K562ILF2
POLR2FENSG00000100142.10213.20540453.62300-1.0892010.787108.07240K562ILF3
POLR2FENSG00000100142.10272.80720466.38280-0.773604.734903.47320K562KRR1
POLR2FENSG00000100142.10660.63380520.421700.344102.092201.35610K562MAGOH
POLR2FENSG00000100142.10684.27520519.303300.397902.624301.72710K562MATR3
POLR2FENSG00000100142.10398.38910533.16070-0.420402.666101.80980K562METAP2
POLR2FENSG00000100142.10753.89910902.96110-0.260302.513401.79810K562NSUN2
POLR2FENSG00000100142.10707.33400955.65820-0.434102.523201.72930K562PCBP3
POLR2FENSG00000100142.101129.38460798.784700.499604.699903.59000K562PPIG
POLR2FENSG00000100142.10796.65210539.203300.563004.377203.43510K562PRPF8
POLR2FENSG00000100142.10772.60340505.653100.611506.702205.70500K562PTBP1
POLR2FENSG00000100142.101133.41430696.712200.701907.967207.09290K562PUS1
POLR2FENSG00000100142.10842.09940678.785200.310901.964401.44990K562RBM15
POLR2FENSG00000100142.10544.98590895.52740-0.716504.437802.39250K562RPS3A
POLR2FENSG00000100142.10439.20260279.062700.654205.544404.30580K562SF3B4
POLR2FENSG00000100142.10793.74020495.754900.678907.572406.41090K562SRSF1
POLR2FENSG00000100142.10645.91470824.95180-0.353003.085801.84480K562SRSF7
POLR2FENSG00000100142.10100.07640263.66960-1.397605.667703.24400K562TAF15
POLR2FENSG00000100142.10156.14140279.76250-0.841305.037502.85630K562TBRG4
POLR2FENSG00000100142.10163.87000268.71540-0.713503.907002.95310K562U2AF2
POLR2FENSG00000100142.10682.87870957.42850-0.487506.447905.40450K562UPF1
POLR2FENSG00000100142.10582.36790819.24180-0.492404.545103.41020K562WDR3
POLR2FENSG00000100142.10680.55910851.91310-0.324003.262202.35050K562WDR43
POLR2FENSG00000100142.10942.817701283.74050-0.445304.363703.23940K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for POLR2F is not available on ENCORE database.





2 RBPs can affect the splicing of POLR2F :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPOLR2FENSG00000100142.10chr22+3835438038354478383527793835284938355352383554380.085000.000000.00000includedHepG2HNRNPC
SEPOLR2FENSG00000100142.10chr22+3835438038354478383527793835284938355352383554830.088000.000000.00000includedK562HNRNPC
MXEPOLR2FENSG00000100142.10chr22+38352779383528493835535238355483383497053834981438363105383631770.110000.000010.000601includedHepG2XRN2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for POLR2F is not avaliable on ENCORE database.