PROM1

General Information

Gene Name       : PROM1
Gene ID             : ENSG00000007062.11
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PROM1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PROM1ENSG00000007062.110.000.000.00ENCSR000AEF
HepG2PROM1ENSG00000007062.115.938.537.23ENCSR985KAT
K562PROM1ENSG00000007062.110.010.000.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PROM1 is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on PROM1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for PROM1 is not avaliable on ENCORE database.






NO known proteins are bound to PROM1 RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for PROM1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PROM1 is not available on ENCORE database.

  • 85 RBPs can affect the levels of PROM1.  








The Knockdown/knockout RNA-Seq assay for PROM1 is not available on ENCORE database.





85 RBPs can affect the gene expression of PROM1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PROM1ENSG00000007062.7313.18550548.89650-0.809505.175203.92780HepG2ABCF1
PROM1ENSG00000007062.7314.04610560.89670-0.836807.850406.27810HepG2ADAR
PROM1ENSG00000007062.7693.46740513.125100.434402.728901.69720HepG2AKAP8
PROM1ENSG00000007062.71039.04700859.440300.273702.544701.88180HepG2AUH
PROM1ENSG00000007062.7424.52510624.96500-0.557903.237302.22410HepG2BCCIP
PROM1ENSG00000007062.7271.88430507.05030-0.899108.394707.42150HepG2BOP1
PROM1ENSG00000007062.7759.39390558.535300.443103.543402.68690HepG2CALR
PROM1ENSG00000007062.7628.55680452.128800.475203.669702.39960HepG2CPSF7
PROM1ENSG00000007062.7230.04870386.04520-0.746805.166003.75950HepG2CSTF2
PROM1ENSG00000007062.71224.86750797.389300.6192010.561309.46340HepG2CELF1
PROM1ENSG00000007062.7231.83960495.89070-1.0969018.1615016.46120HepG2DDX19B
PROM1ENSG00000007062.7431.37340560.40070-0.377502.425401.57480HepG2DDX24
PROM1ENSG00000007062.7995.60250614.467200.696105.757804.69030HepG2DDX55
PROM1ENSG00000007062.7755.79730528.613900.515702.224001.35080HepG2DDX59
PROM1ENSG00000007062.7414.67290544.75220-0.393602.428901.50950HepG2DHX30
PROM1ENSG00000007062.7233.79780512.97310-1.1336016.1026014.76020HepG2DKC1
PROM1ENSG00000007062.7455.57870564.81220-0.310102.053601.43760HepG2DNAJC21
PROM1ENSG00000007062.7822.09310559.787200.554308.441307.37850HepG2DNAJC2
PROM1ENSG00000007062.7404.75680581.95400-0.523803.324202.32100HepG2EEF2
PROM1ENSG00000007062.7779.12600527.372500.562903.542302.27980HepG2AGO1
PROM1ENSG00000007062.7453.08070593.02240-0.388302.047001.52800HepG2EIF2S1
PROM1ENSG00000007062.7329.86060540.88010-0.713506.960005.37700HepG2EIF3G
PROM1ENSG00000007062.7372.52950655.39000-0.815006.679605.68440HepG2EIF4A3
PROM1ENSG00000007062.71241.44970638.055700.960209.113107.90420HepG2EIF4B
PROM1ENSG00000007062.7598.43210845.85890-0.499205.778904.64630HepG2EIF4G1
PROM1ENSG00000007062.7287.04190475.54730-0.728305.315803.85040HepG2ESF1
PROM1ENSG00000007062.7512.07400986.73760-0.9463019.5876018.23090HepG2ETF1
PROM1ENSG00000007062.7577.93150422.254100.452703.490602.16180HepG2FAM120A
PROM1ENSG00000007062.7813.52950554.274300.553503.820202.92810HepG2FIP1L1
PROM1ENSG00000007062.7258.11270466.29130-0.853203.101602.02370HepG2FTO
PROM1ENSG00000007062.7243.49530389.83500-0.679004.863003.83550HepG2FUBP3
PROM1ENSG00000007062.71139.79300733.357100.636104.389303.00000HepG2FUS
PROM1ENSG00000007062.7916.42670661.168400.470903.366102.60680HepG2FXR1
PROM1ENSG00000007062.7284.96890420.59270-0.561603.639002.59960HepG2GEMIN5
PROM1ENSG00000007062.7174.97810570.22280-1.7044025.5076023.89980HepG2HNRNPA1
PROM1ENSG00000007062.7377.23120634.25500-0.749606.916905.86030HepG2HNRNPC
PROM1ENSG00000007062.7412.45740659.88700-0.678008.561207.38890HepG2HNRNPF
PROM1ENSG00000007062.7469.90730620.98840-0.402202.339401.69470HepG2HNRNPK
PROM1ENSG00000007062.7327.43520503.59530-0.621104.079903.33110HepG2HNRNPLL
PROM1ENSG00000007062.7798.45400630.062700.341603.236102.58400HepG2HNRNPU
PROM1ENSG00000007062.7321.30950649.80210-1.0160014.0580012.55770HepG2IGF2BP1
PROM1ENSG00000007062.71045.36660643.590300.6997015.0867013.53340HepG2ILF2
PROM1ENSG00000007062.7321.04320490.14210-0.610406.559905.02650HepG2KIF1C
PROM1ENSG00000007062.7611.43980944.51260-0.627404.470203.40400HepG2LARP4
PROM1ENSG00000007062.7363.42670661.39880-0.863907.949406.84970HepG2MAGOH
PROM1ENSG00000007062.7500.91890665.11570-0.409002.106501.55170HepG2MATR3
PROM1ENSG00000007062.71090.52960448.683701.2812025.4414023.35950HepG2MSI2
PROM1ENSG00000007062.7560.42250376.739800.572804.903803.29700HepG2NAA15
PROM1ENSG00000007062.71074.33720850.123600.337603.204902.38680HepG2NOL12
PROM1ENSG00000007062.7291.09280446.52180-0.617303.737502.86950HepG2NSUN2
PROM1ENSG00000007062.7195.91470564.63570-1.527106.220404.85390HepG2PABPC1
PROM1ENSG00000007062.7953.04500623.669700.611709.173407.77500HepG2PARN
PROM1ENSG00000007062.71145.19050595.319100.9438022.3536020.89970HepG2PCBP1
PROM1ENSG00000007062.7496.18140694.23450-0.484602.422801.44660HepG2PCBP2
PROM1ENSG00000007062.7255.36700554.05330-1.117504.119402.25860HepG2PNPT1
PROM1ENSG00000007062.7344.21740496.70540-0.529104.660303.68400HepG2PRPF4
PROM1ENSG00000007062.71258.25940605.786401.0544027.3863026.01130HepG2PTBP1
PROM1ENSG00000007062.7547.46440811.53560-0.567905.260404.47120HepG2PUF60
PROM1ENSG00000007062.7689.81120546.123700.336902.973002.34040HepG2PUS1
PROM1ENSG00000007062.72056.81760669.966101.6182019.1201017.43180HepG2RAVER1
PROM1ENSG00000007062.71031.02620824.733200.322002.841002.31750HepG2RBM22
PROM1ENSG00000007062.7383.30100617.85550-0.688805.278903.80570HepG2RCC2
PROM1ENSG00000007062.7325.28030710.83380-1.1278015.6020014.23420HepG2RPLP0
PROM1ENSG00000007062.7884.98490468.915600.916209.193107.87870HepG2RRP9
PROM1ENSG00000007062.7441.56870561.10600-0.345602.683402.04620HepG2SAFB2
PROM1ENSG00000007062.7182.14450529.92480-1.5407015.6423013.96420HepG2SF3A3
PROM1ENSG00000007062.7380.40770498.46910-0.390002.149501.52250HepG2SF3B1
PROM1ENSG00000007062.7948.70760630.653500.589008.309707.37090HepG2SF3B4
PROM1ENSG00000007062.71176.88840931.511200.337203.974803.40620HepG2SRFBP1
PROM1ENSG00000007062.71098.01540658.285500.7380011.8122010.98080HepG2SRSF1
PROM1ENSG00000007062.7504.80880801.29880-0.666609.254608.19960HepG2SRSF5
PROM1ENSG00000007062.7423.63750648.31110-0.613907.095906.06450HepG2SRSF7
PROM1ENSG00000007062.7509.22890808.78190-0.667409.816308.96490HepG2SSB
PROM1ENSG00000007062.7199.05930370.30120-0.895505.455603.78000HepG2STAU1
PROM1ENSG00000007062.7767.94580591.747400.375903.328202.72170HepG2TAF15
PROM1ENSG00000007062.7848.25640490.806700.789205.546104.57250HepG2TARDBP
PROM1ENSG00000007062.7324.37780546.76250-0.753203.022801.90960HepG2TBRG4
PROM1ENSG00000007062.7578.36650410.002900.496202.786601.78820HepG2TFIP11
PROM1ENSG00000007062.7402.07510612.27030-0.606705.983005.30070HepG2TIAL1
PROM1ENSG00000007062.7550.28570792.87080-0.526904.682903.51310HepG2TUFM
PROM1ENSG00000007062.7350.39630474.19710-0.436502.089001.53530HepG2U2AF1
PROM1ENSG00000007062.71325.28900839.264200.659005.978404.71850HepG2UBE2L3
PROM1ENSG00000007062.7255.23690555.23990-1.121304.498003.08710HepG2XPO5
PROM1ENSG00000007062.7221.75980602.14940-1.4411017.7640015.97810HepG2XRN2
PROM1ENSG00000007062.7311.24390516.86860-0.731809.284808.43390HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PROM1 is not available on ENCORE database.





4 RBPs can affect the splicing of PROM1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPROM1ENSG00000007062.7chr4-159913541599144715989285159893391599284415992916-0.176000.005610.05815excludedHepG2U2AF2
SEPROM1ENSG00000007062.7chr4-1603735716037384160349261603513216040568160406240.275000.000480.02651includedHepG2SFPQ
SEPROM1ENSG00000007062.7chr4-1603735716037384160349261603513216040568160406240.780000.000000.00000includedHepG2PTBP1
SEPROM1ENSG00000007062.7chr4-159810171598108615972665159727051598150315981527-0.742000.000890.08656excludedHepG2RBFOX2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PROM1 is not avaliable on ENCORE database.