WIPI1

General Information

Gene Name       : WIPI1
Gene ID             : ENSG00000070540.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: WIPI1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WIPI1ENSG00000070540.1221.8219.5920.70ENCSR000AEF
HepG2WIPI1ENSG00000070540.1227.8229.1428.48ENCSR985KAT
K562WIPI1ENSG00000070540.1211.2810.6910.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WIPI1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • WIPI1 RNA is bound by 6 proteins.  







eCLIP assay for WIPI1 is not avaliable on ENCORE database.





6 proteins are bound to WIPI1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr176642327266423355-3'-UTR,CDS,intron-Distal,intron-Proximal4.576285.18972HepG2GRWD1
chr176645342466453500-5'-UTR,CDS,intron-Distal5.249336.01989HepG2PRPF8
chr176642496666425029-CDS,intron-Distal,intron-Proximal4.6583812.92402K562LIN28B
chr176642753366427657-intron-Distal4.393324.58231HepG2HNRNPK
chr176641881666418875-intron-Distal4.322893.24242HepG2HNRNPC
chr176642318966423221-intron-Distal,intron-Proximal3.738325.52268HepG2RBFOX2
chr176642308866423189-intron-Distal,intron-Proximal3.902149.46305HepG2RBFOX2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WIPI1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WIPI1 is not available on ENCORE database.

  • 149 RBPs can affect the levels of WIPI1.  








The Knockdown/knockout RNA-Seq assay for WIPI1 is not available on ENCORE database.





149 RBPs can affect the gene expression of WIPI1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WIPI1ENSG00000070540.8849.69680577.666500.556605.051803.64580HepG2AATF
WIPI1ENSG00000070540.8636.772101356.38280-1.0909015.8503013.92810HepG2ABCF1
WIPI1ENSG00000070540.8261.57120820.19620-1.6488029.6729027.07040HepG2ADAR
WIPI1ENSG00000070540.81347.883001061.459500.344501.918101.46590HepG2AKAP1
WIPI1ENSG00000070540.8630.82920993.74690-0.6556010.836709.44500HepG2AKAP8L
WIPI1ENSG00000070540.81389.25140878.234600.661506.852105.64020HepG2ASCC1
WIPI1ENSG00000070540.8794.29740556.747100.512603.375202.38520HepG2BCLAF1
WIPI1ENSG00000070540.8357.37530701.39230-0.9728011.6329010.51900HepG2BOP1
WIPI1ENSG00000070540.81095.76510787.499700.476505.115004.10580HepG2CALR
WIPI1ENSG00000070540.8480.01230936.37590-0.964007.437606.19240HepG2CNOT7
WIPI1ENSG00000070540.81010.94960643.914500.650706.572805.54560HepG2CPSF6
WIPI1ENSG00000070540.8165.06230395.76810-1.2616012.7399010.74420HepG2CSTF2
WIPI1ENSG00000070540.82307.479201051.236601.1341041.8072039.90990HepG2CELF1
WIPI1ENSG00000070540.81395.457101130.259300.304004.298303.40750HepG2DAZAP1
WIPI1ENSG00000070540.8523.15330914.77390-0.8062017.2508015.57930HepG2DDX19B
WIPI1ENSG00000070540.8611.71940842.28700-0.461404.707003.21480HepG2DDX1
WIPI1ENSG00000070540.8448.12220623.69800-0.477003.693702.62810HepG2DDX24
WIPI1ENSG00000070540.81811.634201016.724800.8333010.715309.56130HepG2DDX3X
WIPI1ENSG00000070540.81657.148701203.296800.461604.621002.97230HepG2DDX47
WIPI1ENSG00000070540.81031.77230629.992900.711605.907504.83050HepG2DDX55
WIPI1ENSG00000070540.81576.95830873.559800.852109.676808.59750HepG2DDX6
WIPI1ENSG00000070540.8467.32870946.29750-1.0179021.3598019.89780HepG2DKC1
WIPI1ENSG00000070540.81042.34240825.922100.335703.259302.50050HepG2DNAJC21
WIPI1ENSG00000070540.8570.00140910.96540-0.676406.304604.96610HepG2EEF2
WIPI1ENSG00000070540.8226.06860601.89320-1.4127022.9820020.50170HepG2EIF3G
WIPI1ENSG00000070540.8613.15460927.77770-0.597504.576303.75720HepG2EIF4A3
WIPI1ENSG00000070540.81629.48400903.479600.850807.831706.70450HepG2EIF4B
WIPI1ENSG00000070540.8569.211701174.77590-1.0453017.0686014.72340HepG2ESF1
WIPI1ENSG00000070540.8798.425401583.86910-0.9882026.7439025.20060HepG2ETF1
WIPI1ENSG00000070540.8682.15750966.52780-0.502704.912203.80330HepG2EWSR1
WIPI1ENSG00000070540.8875.44480660.963200.405303.629802.27130HepG2FAM120A
WIPI1ENSG00000070540.8849.63420607.399700.484104.233402.86340HepG2FASTKD2
WIPI1ENSG00000070540.8377.29180645.02190-0.773702.876101.84010HepG2FTO
WIPI1ENSG00000070540.81194.44240868.460100.459703.321602.59720HepG2G3BP1
WIPI1ENSG00000070540.8603.48860922.15370-0.611705.351604.10110HepG2G3BP2
WIPI1ENSG00000070540.8423.53460658.39380-0.636505.392704.13730HepG2GEMIN5
WIPI1ENSG00000070540.8316.32230717.41080-1.1814014.3083012.02640HepG2GNB2L1
WIPI1ENSG00000070540.8528.34050729.92240-0.466302.829402.18200HepG2GPKOW
WIPI1ENSG00000070540.81105.06500748.863300.561303.229601.52250HepG2GTF2F1
WIPI1ENSG00000070540.81134.07320761.512900.574502.897901.48610HepG2HLTF
WIPI1ENSG00000070540.8382.43040833.83400-1.1246016.7328015.36310HepG2HNRNPA1
WIPI1ENSG00000070540.81553.698901038.778400.5807011.062309.42420HepG2HNRNPA2B1
WIPI1ENSG00000070540.8401.25730927.46780-1.2088019.3472017.67920HepG2HNRNPC
WIPI1ENSG00000070540.81868.340901258.914900.5695011.047409.74000HepG2HNRNPF
WIPI1ENSG00000070540.81457.591601029.556000.5015010.240009.02230HepG2HNRNPL
WIPI1ENSG00000070540.8922.68130696.578900.405402.709302.08520HepG2HNRNPLL
WIPI1ENSG00000070540.8624.28690944.76000-0.597706.906105.50190HepG2HNRNPM
WIPI1ENSG00000070540.8519.60150921.33730-0.8263015.9766014.61760HepG2HNRNPU
WIPI1ENSG00000070540.8996.160201464.19140-0.555704.325202.77790HepG2HSPD1
WIPI1ENSG00000070540.81564.782801239.658300.335901.989001.36760HepG2IGF2BP1
WIPI1ENSG00000070540.81488.25340882.723900.753508.928807.79290HepG2IGF2BP2
WIPI1ENSG00000070540.81099.69560941.118700.224601.940701.31310HepG2ILF2
WIPI1ENSG00000070540.8845.20160634.998200.412403.170201.40490HepG2CCAR2
WIPI1ENSG00000070540.81091.25970904.160500.271202.990201.93500HepG2KIF1C
WIPI1ENSG00000070540.8978.593101396.18010-0.512703.607302.65950HepG2LARP4
WIPI1ENSG00000070540.8966.82750702.838100.460003.954102.59140HepG2LARP7
WIPI1ENSG00000070540.81219.10890705.114200.789808.666405.89240HepG2LSM11
WIPI1ENSG00000070540.8675.93400941.86870-0.478603.136602.46840HepG2MATR3
WIPI1ENSG00000070540.81558.34050773.900801.009709.239407.43670HepG2METAP2
WIPI1ENSG00000070540.81354.44610858.372400.657906.554905.45320HepG2PABPC4
WIPI1ENSG00000070540.81426.27210911.989200.6451012.7425011.14270HepG2PARN
WIPI1ENSG00000070540.81476.76900957.986800.6243012.5559011.41130HepG2PCBP1
WIPI1ENSG00000070540.8996.81330674.393500.563603.840601.86920HepG2PHF6
WIPI1ENSG00000070540.81267.35390839.704500.593803.399501.70500HepG2PNPT1
WIPI1ENSG00000070540.8665.40580821.76240-0.304502.462901.76330HepG2PPIL4
WIPI1ENSG00000070540.8289.67670877.90110-1.5996043.8481041.56350HepG2PRPF4
WIPI1ENSG00000070540.8554.14380790.92480-0.513302.664001.46470HepG2PRPF6
WIPI1ENSG00000070540.8304.17330485.95740-0.675904.535603.52870HepG2PRPF8
WIPI1ENSG00000070540.81531.15810974.797700.6513013.0227012.01040HepG2PTBP1
WIPI1ENSG00000070540.8654.185701069.89180-0.709708.797607.81460HepG2PUF60
WIPI1ENSG00000070540.81939.610601055.707900.8775020.3516018.88030HepG2QKI
WIPI1ENSG00000070540.82385.05250726.085701.7157021.6287019.83830HepG2RAVER1
WIPI1ENSG00000070540.81123.079001323.83580-0.237301.908501.45700HepG2RBM22
WIPI1ENSG00000070540.8364.42100688.21240-0.917208.251106.43300HepG2RCC2
WIPI1ENSG00000070540.8439.569701084.84770-1.3033033.8013032.36640HepG2NELFE
WIPI1ENSG00000070540.8640.665901010.40380-0.6573010.410909.33130HepG2RECQL
WIPI1ENSG00000070540.8967.087901356.36160-0.488005.359704.45140HepG2RPLP0
WIPI1ENSG00000070540.8429.37180719.56990-0.744908.287807.29040HepG2RPS19
WIPI1ENSG00000070540.8472.04500781.62950-0.727607.000305.76510HepG2RPS2
WIPI1ENSG00000070540.8673.68710940.18610-0.480902.778801.97820HepG2RPS3A
WIPI1ENSG00000070540.81034.19010820.502400.333803.818003.08210HepG2SAFB2
WIPI1ENSG00000070540.8352.545001010.37670-1.519003.567001.98390HepG2SF1
WIPI1ENSG00000070540.8599.93530993.18380-0.727302.895402.20520HepG2SF3A3
WIPI1ENSG00000070540.81385.206001014.871600.448706.483405.64070HepG2SF3B4
WIPI1ENSG00000070540.81049.67860706.359000.571403.879201.96000HepG2SND1
WIPI1ENSG00000070540.81038.06850767.160200.436202.104701.42600HepG2SNRNP70
WIPI1ENSG00000070540.8725.132501059.31390-0.546807.909707.20590HepG2SRSF1
WIPI1ENSG00000070540.8830.342801056.39270-0.347403.561902.86830HepG2SRSF5
WIPI1ENSG00000070540.81846.838001236.888900.5782011.3700010.12280HepG2SRSF7
WIPI1ENSG00000070540.81395.91770861.814800.6957015.8011014.67620HepG2SRSF9
WIPI1ENSG00000070540.8385.579901298.27480-1.7515053.5030051.95050HepG2SSB
WIPI1ENSG00000070540.8977.852801459.00910-0.577305.029303.35550HepG2SSRP1
WIPI1ENSG00000070540.8568.49060817.83200-0.524703.326502.10750HepG2STIP1
WIPI1ENSG00000070540.81049.90300678.531500.629703.793102.37850HepG2SUB1
WIPI1ENSG00000070540.8953.512101201.38350-0.333404.074103.34450HepG2SUCLG1
WIPI1ENSG00000070540.8768.61930952.17370-0.309002.674402.12250HepG2TAF15
WIPI1ENSG00000070540.8849.28880678.961600.322801.982001.35580HepG2TARDBP
WIPI1ENSG00000070540.8773.47200420.343900.879707.841706.32590HepG2TFIP11
WIPI1ENSG00000070540.81502.17280874.895500.7798013.6875011.86440HepG2TIA1
WIPI1ENSG00000070540.8320.00720895.32030-1.4843033.7483032.35460HepG2TIAL1
WIPI1ENSG00000070540.8909.799601171.40840-0.364602.810402.17750HepG2U2AF1
WIPI1ENSG00000070540.81890.218501106.440000.772508.860707.32980HepG2UBE2L3
WIPI1ENSG00000070540.8597.69330370.464200.690005.642504.55000HepG2UCHL5
WIPI1ENSG00000070540.8261.28100574.24360-1.136109.454807.54870HepG2UPF2
WIPI1ENSG00000070540.8583.07080850.37560-0.544402.064601.53190HepG2UTP3
WIPI1ENSG00000070540.81506.05850713.914701.0769010.921208.49920HepG2XRCC5
WIPI1ENSG00000070540.8196.35030617.35000-1.6527023.0615021.06420HepG2XRN2
WIPI1ENSG00000070540.8397.16510866.35160-1.1252026.8281025.13310HepG2ZC3H8
WIPI1ENSG00000070540.81669.47770968.711400.785207.539306.75140HepG2ZNF622
WIPI1ENSG00000070540.8495.61320725.33670-0.549403.308301.87870HepG2ZRANB2
WIPI1ENSG00000070540.866.16160146.23490-1.144203.727201.72490K562ADAR
WIPI1ENSG00000070540.8302.67500838.67250-1.4703034.1905032.26930K562AGGF1
WIPI1ENSG00000070540.8617.22610872.67600-0.499604.257303.44330K562AKAP8L
WIPI1ENSG00000070540.8233.29530424.77870-0.864606.200304.22750K562APOBEC3C
WIPI1ENSG00000070540.8194.56960354.15660-0.864105.264504.50020K562AQR
WIPI1ENSG00000070540.8193.63060315.07530-0.702402.953801.85060K562CNOT7
WIPI1ENSG00000070540.8402.94000592.11920-0.555303.370902.29390K562CELF1
WIPI1ENSG00000070540.8740.64360983.99240-0.409903.102101.54310K562DDX19B
WIPI1ENSG00000070540.8435.69560254.648900.774706.926505.18240K562DDX3X
WIPI1ENSG00000070540.8128.94850372.10540-1.5289013.2952011.97710K562DDX47
WIPI1ENSG00000070540.889.39670160.29580-0.842403.676002.10620K562DHX30
WIPI1ENSG00000070540.8667.16620939.06680-0.493205.793604.46610K562DKC1
WIPI1ENSG00000070540.894.97210153.98180-0.697202.639801.33200K562DNAJC21
WIPI1ENSG00000070540.886.25230163.22170-0.920203.303401.37410K562DNAJC2
WIPI1ENSG00000070540.876.37030152.48690-0.997603.245902.25180K562EFTUD2
WIPI1ENSG00000070540.8401.57680212.553000.917804.757701.98370K562AGO1
WIPI1ENSG00000070540.8605.47790184.651101.7132030.9332029.00500K562EIF2S2
WIPI1ENSG00000070540.857.26950145.65300-1.346704.622703.29040K562EIF3A
WIPI1ENSG00000070540.8112.09280216.29220-0.948304.341503.35510K562EIF3G
WIPI1ENSG00000070540.8232.92740481.42870-1.0474013.3321011.35910K562EIF4G2
WIPI1ENSG00000070540.8372.91430231.397400.688404.153402.16570K562FASTKD2
WIPI1ENSG00000070540.8269.05820174.944900.620903.305802.37400K562FIP1L1
WIPI1ENSG00000070540.8310.91280191.198800.701303.720902.12820K562FUS
WIPI1ENSG00000070540.8115.09630276.67230-1.2653011.5176010.36970K562FXR1
WIPI1ENSG00000070540.8252.00220142.579600.821604.636003.61270K562GPKOW
WIPI1ENSG00000070540.8123.48980245.99340-0.994202.350201.65100K562GRSF1
WIPI1ENSG00000070540.8136.29600238.20840-0.805504.964503.54200K562HNRNPA1
WIPI1ENSG00000070540.8165.53530294.90450-0.833103.759401.90750K562HNRNPAB
WIPI1ENSG00000070540.8141.64820233.01220-0.718103.500802.83960K562HNRNPC
WIPI1ENSG00000070540.8226.81030355.19520-0.647102.755601.52320K562HNRNPK
WIPI1ENSG00000070540.8222.21200336.31830-0.597903.608302.38050K562HNRNPL
WIPI1ENSG00000070540.8116.30990263.78300-1.1814010.152008.46060K562HNRNPU
WIPI1ENSG00000070540.8664.68120237.173201.4866021.8892019.83370K562HSPD1
WIPI1ENSG00000070540.8631.07210926.13010-0.553402.026501.32970K562KIF1C
WIPI1ENSG00000070540.8230.17330121.736000.918904.173103.00350K562KRR1
WIPI1ENSG00000070540.8189.58520373.85280-0.979605.316204.13970K562MAGOH
WIPI1ENSG00000070540.8239.39560373.04610-0.640002.730201.81400K562MATR3
WIPI1ENSG00000070540.8724.015501037.49920-0.519005.546704.16980K562MBNL1
WIPI1ENSG00000070540.8162.43510287.94660-0.825903.146802.28510K562MTPAP
WIPI1ENSG00000070540.8474.56900727.21160-0.615803.826702.74410K562NAA15
WIPI1ENSG00000070540.8373.55270265.663300.491602.936601.67040K562NCBP2
WIPI1ENSG00000070540.8364.75400526.66530-0.530003.888102.09940K562NOL12
WIPI1ENSG00000070540.8149.48010332.57840-1.153706.593605.06460K562PCBP2
WIPI1ENSG00000070540.8101.41120206.79570-1.028006.188204.99500K562POLR2G
WIPI1ENSG00000070540.8306.47460198.612400.625703.682102.71410K562PPIG
WIPI1ENSG00000070540.853.13680148.38580-1.481605.022404.01520K562PRPF8
WIPI1ENSG00000070540.8205.62860363.24520-0.820903.780003.01550K562PTBP1
WIPI1ENSG00000070540.8266.42860525.25310-0.9793010.107608.52490K562PUF60
WIPI1ENSG00000070540.8353.65850558.84410-0.660106.786405.05430K562PUM1
WIPI1ENSG00000070540.8349.52760547.39840-0.647205.452004.08520K562PUM2
WIPI1ENSG00000070540.8374.53020865.46090-1.2084016.5242015.23510K562PUS1
WIPI1ENSG00000070540.8435.71330260.731900.740703.696702.01730K562RAVER1
WIPI1ENSG00000070540.8446.28660843.25640-0.9180014.3226012.96590K562RBM15
WIPI1ENSG00000070540.8212.81720366.39720-0.783803.732202.44200K562NELFE
WIPI1ENSG00000070540.895.00650184.21610-0.955304.678803.26490K562SAFB
WIPI1ENSG00000070540.8232.66890315.71460-0.440302.284801.53790K562SF3A3
WIPI1ENSG00000070540.899.86560157.72310-0.659302.519201.31920K562SLBP
WIPI1ENSG00000070540.8164.95970356.13700-1.110306.004504.97170K562SRSF1
WIPI1ENSG00000070540.872.68830207.40220-1.5126011.063709.42640K562SYNCRIP
WIPI1ENSG00000070540.8428.00580284.794200.587603.888201.97300K562TBRG4
WIPI1ENSG00000070540.8386.47080258.824900.578304.231102.66000K562TROVE2
WIPI1ENSG00000070540.8177.76500273.53000-0.621703.700302.76710K562U2AF2
WIPI1ENSG00000070540.8162.57530301.84350-0.892707.427406.10460K562WDR43
WIPI1ENSG00000070540.8768.40680388.378400.984304.665702.38930K562XPO5
WIPI1ENSG00000070540.8132.45730319.95940-1.272404.847102.60210K562XRCC6
WIPI1ENSG00000070540.8518.60980398.915600.378502.317501.53930K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WIPI1 is not available on ENCORE database.





4 RBPs can affect the splicing of WIPI1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEWIPI1ENSG00000070540.8chr17-6644444566444623664406336644073066446868664470380.057000.000050.00106includedHepG2U2AF2
SEWIPI1ENSG00000070540.8chr17-6645250566452625664490506644913366453482664536540.135000.000390.00638includedHepG2U2AF2
SEWIPI1ENSG00000070540.8chr17-664306966643076766429608664297166643176066431853-0.108000.001840.02816excludedK562PUS1
SEWIPI1ENSG00000070540.8chr17-664490506644913366446868664470386645348266453654-0.180000.000020.00645excludedHepG2LARP4
MXEWIPI1ENSG00000070540.8chr17-66446868664470386644905066449133664406336644073066453482664536400.073000.001380.050841includedHepG2HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WIPI1 is not avaliable on ENCORE database.