VCAN

General Information

Gene Name       : VCAN
Gene ID             : ENSG00000038427.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: VCAN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878VCANENSG00000038427.156.525.375.95ENCSR000AEF
HepG2VCANENSG00000038427.1518.4317.4017.91ENCSR985KAT
K562VCANENSG00000038427.150.210.080.14ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for VCAN is not avaliable on ENCORE database.



Proteins bound to RNA
  • VCAN RNA is bound by 2 proteins.  







eCLIP assay for VCAN is not avaliable on ENCORE database.





2 proteins are bound to VCAN RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr58278937482789466+CDS3.814633.57831HepG2SND1
chr58283301882833097+CDS,intron-Distal4.491343.45943HepG2BCLAF1
chr58280814782808194+CDS4.613153.77218HepG2SND1
chr58278613082786247+CDS4.194904.67599HepG2SND1
chr58283294482833018+CDS,intron-Distal3.234403.94979HepG2BCLAF1
chr58283426082834366+CDS,intron-Distal3.083703.21814HepG2SND1
chr58278949582789538+CDS4.378403.19000HepG2SND1
chr58284923082849328+CDS3.997485.03100HepG2SND1
chr58283479082834876+CDS,intron-Distal4.600213.19000HepG2SND1
chr58283775482837818+CDS,intron-Distal4.770906.63657HepG2SND1
chr58280805882808147+CDS3.746443.98500HepG2SND1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for VCAN is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for VCAN is not available on ENCORE database.

  • 164 RBPs can affect the levels of VCAN.  








The Knockdown/knockout RNA-Seq assay for VCAN is not available on ENCORE database.





164 RBPs can affect the gene expression of VCAN :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
VCANENSG00000038427.113176.194402314.787000.456304.819603.43980HepG2AATF
VCANENSG00000038427.113135.399801617.143000.9551014.0836012.93850HepG2ACO1
VCANENSG00000038427.111485.233803558.22950-1.2605030.0919027.47390HepG2ADAR
VCANENSG00000038427.11706.29120400.950800.816706.288802.70110HepG2AGGF1
VCANENSG00000038427.112537.84470607.980102.0614049.6159047.79270HepG2AKAP1
VCANENSG00000038427.111365.312001034.854900.399702.737601.70370HepG2AKAP8
VCANENSG00000038427.112729.813601624.878600.7484022.8997021.00700HepG2AKAP8L
VCANENSG00000038427.111260.659803576.41420-1.5043088.9983086.19220HepG2AUH
VCANENSG00000038427.111849.999003391.34680-0.8743010.701308.79470HepG2BCCIP
VCANENSG00000038427.111582.932002947.08610-0.8967012.3117010.59470HepG2BCLAF1
VCANENSG00000038427.111488.041604529.22900-1.605903.795303.10630HepG2BOP1
VCANENSG00000038427.116789.258803143.263201.1109041.0852038.85970HepG2CALR
VCANENSG00000038427.119703.263806524.755000.572405.165603.81380HepG2CCAR1
VCANENSG00000038427.113661.545001616.957301.1791075.5348073.20880HepG2CKAP4
VCANENSG00000038427.114967.254403408.279800.543303.419502.56220HepG2CNOT7
VCANENSG00000038427.111148.845101749.23330-0.606502.569901.50440HepG2CPSF7
VCANENSG00000038427.111739.307403648.91760-1.0690016.7781014.46400HepG2YBX3
VCANENSG00000038427.11562.384002095.19890-1.8975036.2485033.40960HepG2CSTF2
VCANENSG00000038427.113834.570202369.110300.694604.865902.90180HepG2CSTF2T
VCANENSG00000038427.113989.689803165.817800.333605.308804.47110HepG2CELF1
VCANENSG00000038427.112829.556903404.26900-0.266805.396704.40780HepG2DAZAP1
VCANENSG00000038427.111251.107901495.70180-0.257603.172302.28440HepG2DDX19B
VCANENSG00000038427.112327.276103654.01090-0.6508016.2844013.90810HepG2DDX1
VCANENSG00000038427.111372.296402556.17210-0.897405.432304.51480HepG2DDX21
VCANENSG00000038427.111208.846902499.53750-1.0480010.262708.54980HepG2DDX24
VCANENSG00000038427.111019.43140582.328300.807808.365307.32680HepG2DDX3X
VCANENSG00000038427.112649.001004443.16230-0.746109.213307.02490HepG2DDX47
VCANENSG00000038427.113501.819402210.502700.6636012.5703010.12070HepG2DDX52
VCANENSG00000038427.115021.985203334.257300.590806.909305.75320HepG2DDX55
VCANENSG00000038427.111977.046704722.07890-1.256102.817101.83070HepG2DDX59
VCANENSG00000038427.111542.625101995.73110-0.371503.090002.02860HepG2DDX5
VCANENSG00000038427.112157.78840500.398402.1083051.2918049.14310HepG2DDX6
VCANENSG00000038427.111066.122303455.76770-1.6966060.0940056.96640HepG2DHX30
VCANENSG00000038427.11783.997801547.21050-0.9807019.5561018.13450HepG2DKC1
VCANENSG00000038427.112188.370303582.96660-0.7113019.8984018.19460HepG2DNAJC21
VCANENSG00000038427.112801.145903551.32360-0.342308.186007.13830HepG2DNAJC2
VCANENSG00000038427.113695.893002637.316800.486805.322804.08050HepG2EEF2
VCANENSG00000038427.113477.948802198.517000.661609.170607.15940HepG2EFTUD2
VCANENSG00000038427.111774.76590480.880101.8838045.7040043.53320HepG2EIF2S1
VCANENSG00000038427.112459.598201611.132900.610206.639304.90980HepG2EIF2S2
VCANENSG00000038427.114824.180202140.864701.1720025.7785023.34470HepG2EIF3D
VCANENSG00000038427.117993.15490517.495403.9490035.7359033.47650HepG2EIF4B
VCANENSG00000038427.111971.666903358.31560-0.7683026.2961024.29000HepG2EIF4G1
VCANENSG00000038427.111599.537503217.08820-1.0081021.2277019.15520HepG2EIF4G2
VCANENSG00000038427.11922.317001839.59760-0.996105.820804.29070HepG2ESF1
VCANENSG00000038427.111137.204604106.38320-1.85240133.46330130.43760HepG2ETF1
VCANENSG00000038427.111145.557201580.38480-0.464205.190904.04830HepG2EWSR1
VCANENSG00000038427.116359.071702143.832501.5685041.4557039.18610HepG2FIP1L1
VCANENSG00000038427.111664.470602775.44340-0.737707.312705.39110HepG2FKBP4
VCANENSG00000038427.111153.945904164.83810-1.851704.247102.99230HepG2FTO
VCANENSG00000038427.11482.82400306.298700.656504.899003.86880HepG2FUBP3
VCANENSG00000038427.116271.635803189.272300.9755011.451309.41080HepG2FUS
VCANENSG00000038427.114889.58280536.350603.18840121.49940118.02690HepG2FXR1
VCANENSG00000038427.111038.98660497.416801.0626011.036009.75060HepG2G3BP1
VCANENSG00000038427.112622.356101906.149000.460104.407003.26690HepG2GEMIN5
VCANENSG00000038427.115592.740103060.353500.8698015.1214012.77410HepG2GNB2L1
VCANENSG00000038427.11293.080804714.82820-4.0078010.998209.78410HepG2GPKOW
VCANENSG00000038427.116848.998903154.566701.1184014.2449011.76320HepG2GRSF1
VCANENSG00000038427.114820.243303005.629800.681305.333003.27580HepG2GTF2F1
VCANENSG00000038427.111111.509801544.00920-0.474208.200306.62990HepG2HDGF
VCANENSG00000038427.11930.352303617.29240-1.9591079.8855077.47230HepG2HNRNPA1
VCANENSG00000038427.113829.887303128.506100.291704.432603.29900HepG2HNRNPA2B1
VCANENSG00000038427.111728.205602811.99570-0.702303.935902.24940HepG2HNRNPAB
VCANENSG00000038427.116983.753304023.567600.795407.647206.54060HepG2HNRNPC
VCANENSG00000038427.111547.933302952.05130-0.931405.133703.06750HepG2HNRNPD
VCANENSG00000038427.111539.410204974.13500-1.6921077.4582074.82090HepG2HNRNPF
VCANENSG00000038427.111838.22840503.976201.8668051.6441049.02310HepG2HNRNPK
VCANENSG00000038427.114189.186303101.100500.4338011.5437010.25140HepG2HNRNPL
VCANENSG00000038427.111238.833704499.36280-1.860704.283503.51550HepG2HNRNPLL
VCANENSG00000038427.113857.181001479.703801.3821050.2562047.28570HepG2HNRNPM
VCANENSG00000038427.112506.189503996.96630-0.6734023.0340021.41690HepG2HNRNPU
VCANENSG00000038427.111268.394104898.14480-1.9492058.1121055.57940HepG2IGF2BP1
VCANENSG00000038427.111358.79310505.568101.4262026.4749024.64290HepG2IGF2BP2
VCANENSG00000038427.116487.47780474.635903.7727052.0638048.47670HepG2IGF2BP3
VCANENSG00000038427.112540.382504082.76900-0.6845032.3752030.23880HepG2ILF2
VCANENSG00000038427.111441.572203322.21310-1.204507.128604.93970HepG2ILF3
VCANENSG00000038427.111341.223303244.88510-1.274608.818906.54060HepG2KHDRBS1
VCANENSG00000038427.111819.31510508.599601.8387034.0106030.54490HepG2KHSRP
VCANENSG00000038427.113592.345502708.811500.407203.748001.86080HepG2CCAR2
VCANENSG00000038427.11988.376701478.37460-0.5809013.3286011.30140HepG2KIF1C
VCANENSG00000038427.115181.379506888.48340-0.410902.958102.09870HepG2LARP4
VCANENSG00000038427.114369.633302998.123500.543407.924806.09100HepG2LARP7
VCANENSG00000038427.114015.985803007.909500.416903.899401.88290HepG2LSM11
VCANENSG00000038427.111398.26350536.538901.3818024.2473022.42750HepG2MAGOH
VCANENSG00000038427.113683.489402538.915200.536806.447204.08540HepG2MARK2
VCANENSG00000038427.111086.88690539.502601.010406.296805.37580HepG2MATR3
VCANENSG00000038427.118173.482102240.573401.8670037.6634034.34170HepG2METAP2
VCANENSG00000038427.113032.482401735.953600.8047011.6037010.06360HepG2MSI2
VCANENSG00000038427.111629.403204586.72160-1.493103.354702.28100HepG2MTPAP
VCANENSG00000038427.111789.52090552.178901.6963014.3354012.96640HepG2NCBP2
VCANENSG00000038427.111967.172902710.93500-0.462703.015701.54230HepG2NIP7
VCANENSG00000038427.11610.972901068.02500-0.805806.176004.04570HepG2NKRF
VCANENSG00000038427.114216.906803061.004800.462102.431001.41300HepG2NONO
VCANENSG00000038427.11215.255903988.86680-4.2119011.5076010.07620HepG2NSUN2
VCANENSG00000038427.111523.368801092.016700.480204.985402.86420HepG2NUP35
VCANENSG00000038427.11816.172903114.31510-1.9320013.5600011.55240HepG2PABPC1
VCANENSG00000038427.111153.44350491.604601.2303018.7389016.91340HepG2PABPC4
VCANENSG00000038427.118879.102903956.314001.1662073.7018070.73430HepG2PARN
VCANENSG00000038427.111001.61430453.214901.1440023.2932021.82110HepG2PCBP1
VCANENSG00000038427.111014.615601537.96870-0.600106.471703.89040HepG2PES1
VCANENSG00000038427.112658.556001770.450600.5864010.779308.55400HepG2PKM
VCANENSG00000038427.111376.126803055.87450-1.151006.819404.50170HepG2PNPT1
VCANENSG00000038427.11731.811601094.49060-0.580703.451401.47510HepG2PPIG
VCANENSG00000038427.111547.816403564.97480-1.2037050.3245047.41300HepG2PPIL4
VCANENSG00000038427.11570.987402568.50400-2.1694075.1822072.35890HepG2PRPF4
VCANENSG00000038427.113065.057102572.876900.252402.007901.31600HepG2PRPF8
VCANENSG00000038427.117154.642103421.396101.064208.781805.76030HepG2PSIP1
VCANENSG00000038427.118708.54700461.229904.23880119.20880116.96080HepG2PTBP1
VCANENSG00000038427.111903.808403222.29060-0.7592014.9108013.67480HepG2PUF60
VCANENSG00000038427.117212.550203420.526401.0762038.5517036.85730HepG2PUM1
VCANENSG00000038427.114565.707603418.075900.417606.309105.31020HepG2PUM2
VCANENSG00000038427.114781.32280499.381003.2591036.1704034.33520HepG2QKI
VCANENSG00000038427.111393.240102913.42510-1.064309.322408.08190HepG2RAVER1
VCANENSG00000038427.111132.049902177.17940-0.9435023.1937021.14410HepG2RBM15
VCANENSG00000038427.1131978.256703432.138703.21980288.35650284.72560HepG2RBM22
VCANENSG00000038427.111122.42570453.274101.3081015.8735014.32910HepG2RBM25
VCANENSG00000038427.111821.069302905.34710-0.673905.103802.33040HepG2RBM34
VCANENSG00000038427.114654.03330513.249103.1807016.1737015.07330HepG2NELFE
VCANENSG00000038427.113061.03910478.122502.67850213.26130209.88800HepG2RECQL
VCANENSG00000038427.113035.632905357.73650-0.8196016.6124015.21550HepG2RPLP0
VCANENSG00000038427.111016.084602861.99450-1.4940021.1575018.82660HepG2RPS10
VCANENSG00000038427.117158.479502083.211601.7807086.0342083.48850HepG2RPS19
VCANENSG00000038427.115522.191203334.236700.7278012.1436010.56350HepG2RPS2
VCANENSG00000038427.111897.326703419.81320-0.849904.991403.91740HepG2RPS3A
VCANENSG00000038427.114374.128403403.492000.361903.433402.23400HepG2RPS5
VCANENSG00000038427.111624.624603559.47600-1.1316064.7332062.32640HepG2SAFB2
VCANENSG00000038427.111873.129103220.42220-0.781804.476402.81710HepG2SART3
VCANENSG00000038427.111343.160503250.18640-1.274906.216104.00280HepG2SBDS
VCANENSG00000038427.113425.278002090.738800.7121010.756608.95520HepG2SERBP1
VCANENSG00000038427.111402.135704454.02000-1.667503.875803.05280HepG2SF3B1
VCANENSG00000038427.113900.52640480.080003.02220285.39820281.61350HepG2SF3B4
VCANENSG00000038427.111280.582603089.51550-1.2706078.6116076.08370HepG2SLBP
VCANENSG00000038427.116713.873304150.951900.6936041.2224039.27600HepG2SMN1
VCANENSG00000038427.111696.603302835.56510-0.741007.229404.60800HepG2SND1
VCANENSG00000038427.112476.677004955.68470-1.000702.091901.41570HepG2SNRNP70
VCANENSG00000038427.112123.914003876.40760-0.8680039.9034038.57910HepG2SRFBP1
VCANENSG00000038427.112569.12630501.148502.35790164.25160162.07450HepG2SRSF1
VCANENSG00000038427.112125.083504791.00630-1.172802.510401.56040HepG2SRSF3
VCANENSG00000038427.111724.309104886.77880-1.5029051.3722049.19370HepG2SRSF7
VCANENSG00000038427.111185.63320407.753201.5398043.4046041.73730HepG2SRSF9
VCANENSG00000038427.1145.839503365.52300-6.1981099999.9999999999.99999HepG2SSB
VCANENSG00000038427.111494.286301122.614900.412502.908101.59330HepG2SSRP1
VCANENSG00000038427.111748.285502973.96560-0.766404.651003.18750HepG2STIP1
VCANENSG00000038427.118947.057803618.264301.30600119.32020116.47150HepG2SUCLG1
VCANENSG00000038427.11527.635701136.93230-1.107509.227806.87170HepG2SUGP2
VCANENSG00000038427.11717.491901448.36950-1.013405.561904.25280HepG2SUPT6H
VCANENSG00000038427.11396.625603319.42410-3.0651070.8246068.46460HepG2SUPV3L1
VCANENSG00000038427.11284.534501102.67890-1.9543016.3178014.01140HepG2TBRG4
VCANENSG00000038427.111903.87310413.884602.2015093.0974089.03380HepG2TIA1
VCANENSG00000038427.111321.621403883.80470-1.5552069.5585067.67900HepG2TIAL1
VCANENSG00000038427.115239.379502925.486600.840608.692906.23990HepG2TRA2A
VCANENSG00000038427.112830.882403918.51760-0.4691011.8458010.79630HepG2TRIM56
VCANENSG00000038427.112280.975601834.408100.314202.265601.69120HepG2U2AF1
VCANENSG00000038427.11412.699301961.03790-2.2485047.9123045.03130HepG2UCHL5
VCANENSG00000038427.11832.953601316.35750-0.6602013.7499012.41870HepG2UPF1
VCANENSG00000038427.111165.504803040.16220-1.3832020.0686017.40060HepG2UPF2
VCANENSG00000038427.112323.343501353.039200.7799021.5773019.10580HepG2UTP18
VCANENSG00000038427.114094.616301270.893101.6878032.0754030.37970HepG2UTP3
VCANENSG00000038427.111283.403303062.98950-1.255007.895306.04730HepG2XPO5
VCANENSG00000038427.117553.970103204.063001.2372017.8552015.45850HepG2XRCC6
VCANENSG00000038427.11234.175303267.60230-3.8026094.9093091.44230HepG2XRN2
VCANENSG00000038427.11700.300202534.88230-1.8559063.5538061.24930HepG2ZC3H8
VCANENSG00000038427.112981.223101447.742801.0420058.4337056.77150HepG2ZNF622
VCANENSG00000038427.112087.863002910.88000-0.479403.328401.89530HepG2ZRANB2
VCANENSG00000038427.1154.812606.751003.021206.917305.71450K562GRSF1
VCANENSG00000038427.1171.5747011.897502.588709.483008.07800K562MTPAP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for VCAN is not available on ENCORE database.






No RBPs affect the alternative splcing events of VCAN on ENCORE database.





The Knockdown/knockout RNA-Seq assay for VCAN is not avaliable on ENCORE database.