NIP7

General Information

Gene Name       : NIP7
Gene ID             : ENSG00000132603.14
Essential Gene : Yes

Functions

Localization(RBPImage: NIP7)

Domains (AlphaFold: NIP7)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878NIP7ENSG00000132603.1443.2939.2441.27ENCSR000AEF
HepG2NIP7ENSG00000132603.1441.1168.0054.55ENCSR985KAT
K562NIP7ENSG00000132603.1451.4652.6452.05ENCSR000AEO

Assays

4 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 703ENCSR361OCVNIP7HepG2ReleasedENCAB696XODENCSR138HJN  
knockdown followed by RNA-seq NIP7-BGHLV18-HepG2ENCSR696LLZNIP7HepG2ReleasedENCSR674KEK   shRNAKD% = 9.4,0.0
knockdown followed by RNA-seq NIP7-BGKcLV11-K562ENCSR499IQBNIP7K562ReleasedENCSR292PXV   CRISPRKD% = 86.9,92.9
knockdown followed by RNA-seq NIP7-BGHcLV09-HepG2ENCSR586YGDNIP7HepG2ReleasedENCSR300EBW   CRISPRKD% = 70.7,75.5






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
NIP7703HepG2ENCSR361OCVENCSR138HJNENCAB696XODA303-974A1ReleasedENCODE4


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
NIP7ENCAB696XODA303-974A1Released, ENCODE3Released, ENCODE3BGKcLV11-67, Released, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
NIP7K562shRNABGKLV21-35,BGKLV21-36BGKLV21-1,BGKLV21-25.7,7.9NotSatisfiedENCODE3
NIP7K562shRNABGKLV32-43,BGKLV32-44BGKLV32-1,BGKLV32-20.0,0.0NotSatisfiedENCODE3
NIP7HepG2shRNAENCSR696LLZENCSR674KEKNIP7_BGHLV18_29,NIP7_BGHLV18_30NT_BGHLV18_1,NT_BGHLV18_29.4,0.0ReleasedENCODE3
NIP7HepG2shRNABGHLV33-21,BGHLV33-22BGHLV33-1,BGHLV33-2NotSatisfiedENCODE3
NIP7K562CRISPRBGKcLV11-65,BGKcLV11-66BGKcLV11-1,BGKcLV11-20.0,0.0NotSatisfiedENCODE4
NIP7K562CRISPRENCSR499IQBENCSR292PXVNIP7-BGKcLV11-67,NIP7-BGKcLV11-68NT-BGKcLV11-1,NT-BGKcLV11-286.9,92.9ReleasedENCODE4
NIP7HepG2CRISPRENCSR586YGDENCSR300EBWNIP7-BGHcLV09-5,NIP7-BGHcLV09-6NT-BGHcLV09-1,NT-BGHcLV09-270.7,75.5ReleasedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    NIP7: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Nucleolus
  • Cytoplasm
  • Cytosolic
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    NIP7Product_ID: A303-974A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: NIP7-human    		 HepG2_A303-974A_1_NIP7_MassSpec.png<br>Caption: Representative image of immunoprecipitation performed on whole cell extracts from the HepG2 cell line using the NIP7-specific antibody A303-974A. Lane 1: Input from IP using control IgG. Lane 2: Immunoprecipitated material using control IgG. Lane 3: Input from IP using NIP7 antibody. Lane 4: Immunoprecipitated material using NIP7 antibody. Outlined regions were excised from gel and subjected to analysis by mass spectrometry. Target molecular weight: 20.46 kDa.
    HepG2_Bethyl_A303-974A_1_NIP7.png<br>Caption: IP-Western Blot analysis of HepG2 whole cell lysate using NIP7 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-NIP7 antibody (lanes under 'NIP7').
    		 NIP7-HEPG2-CRISPR.png<br>Caption: Western blot following CRISPR against NIP7 in HepG2 whole cell lysate using NIP7 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against NIP7.NIP7 protein appears as the green band, Tubulin serves as a control and appears in red.
    NIP7%20HepG2.pdf
    		 NIP7-K562-CRISPR.png<br>Caption: Western blot following CRISPR against NIP7 in K562 whole cell lysate using NIP7 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against NIP7.NIP7 protein appears as the green band, Tubulin serves as a control and appears in red.








    RNA Targets
    • NIP7 protein binds to 283 RNA regions.  





    Proteins bound to RNA
    • NIP7 RNA is bound by 9 proteins.  






    NIP7 protein has 283 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 283 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    NIP7chr68638704986387087-3.72657400.00000HepG2SNHG5intron-Distal,intron-Proximal
    NIP7chr156679518566795202-3.6512357.35526HepG2RPL4intron-Distal,intron-Proximal
    NIP7chr9125642582125642585-6.2651311.81503HepG2RC3H2intron-Distal
    NIP7chr2216248161216248205-3.0187318.78654HepG2FN1CDS,intron-Distal
    NIP7chr2216248090216248161-3.2444028.03386HepG2FN1CDS,intron-Distal
    NIP7chr2216300378216300424-3.2505227.57427HepG2FN1CDS,intron-Distal
    NIP7chr9136217711136217759+5.45828400.00000HepG2RPL7Aintron-Distal,intron-Proximal
    NIP7chr223971127539711309-3.18381400.00000HepG2RPL3intron-Distal,intron-Proximal
    NIP7chr1116935520116935592+3.519214.95937HepG2ATP1A1CDS
    NIP7chr201794346517943477-4.57018400.00000HepG2OVOL2, SNX5intron-Distal
    NIP7chr85698642856986460-4.8098683.68397HepG2RPS20intron-Distal
    NIP7chr191281441312814439-3.5436421.33957HepG2TNPO2intron-Distal,intron-Proximal
    NIP7chr177455776274557780+4.3205420.25655HepG2SNHG16intron-Distal
    NIP7chr1173833513173833538-3.4910261.04307HepG2GAS5intron-Distal,intron-Proximal
    NIP7chr132782921427829239+4.3515257.98159HepG2RPL21intron-Distal
    NIP7chr17625516676255230+3.7946979.87792HepG2RABGGTBintron-Distal
    NIP7chr1722324202232505-4.7467343.04758HepG2TSR1intron-Distal
    NIP7chr204789722747897266+5.17718400.00000HepG2ZFAS1intron-Distal
    NIP7chr3186336348186336368+3.8543336.70768HepG2AHSGCDS
    NIP7chr152533284625332876+3.105244.64280HepG2SNHG14intron-Distal
    NIP7chr167057190770571993+4.050969.94355HepG2SF3B3intron-Distal
    NIP7chr39633639196336399-4.1037029.66579HepG2MTRNR2L125'-UTR
    NIP7chr3160232719160232811-4.3286267.54470HepG2KPNA4intron-Distal
    NIP7chr17625357276253575+6.72872400.00000HepG2RABGGTBintron-Distal
    NIP7chr11122929668122929686-3.3109627.54094HepG2HSPA85'-UTR,intron-Distal,intron-Proximal
    NIP7chr195000099050001019+4.1239069.16798HepG2RPS11intron-Distal
    NIP7chr142186546921865513-3.3497524.85118HepG2CHD8intron-Distal
    NIP7chr107051492770514988+3.0693923.97017HepG2CCAR1intron-Distal
    NIP7chr156679521066795249-4.20049400.00000HepG2RPL4intron-Distal,intron-Proximal
    NIP7chr2203142837203142883+4.0783587.38682HepG2NOP58intron-Distal,intron-Proximal
    NIP7chr2232321193232321234-3.10037400.00000HepG2NCLintron-Distal
    NIP7chr172705070027050707+5.5361519.53189HepG2RPL23ACDS,intron-Proximal
    NIP7chr111709738117097402-3.1560067.22755HepG2RPS13intron-Distal
    NIP7chr189319578931969-3.100964.52727HepG2ENO1CDS,intron-Distal
    NIP7chr1980593980660+3.241605.14111HepG2AGRNCDS,intron-Proximal
    NIP7chr6133136446133136456+4.9221766.34031HepG2RPS12intron-Distal,intron-Proximal
    NIP7chr119345494693455033+4.6751421.22523HepG2KIAA1731intron-Distal,intron-Proximal
    NIP7chr195000101950001034+3.3491232.69936HepG2RPS11intron-Distal
    NIP7chr204789722447897227+5.93184400.00000HepG2ZFAS1intron-Distal
    NIP7chr14524220645242214+3.6559217.62231HepG2RPS8intron-Distal
    NIP7chr142186031721860334-4.7323410.96478HepG2CHD8intron-Distal
    NIP7chr184701805447018066-4.0270564.42781HepG2RPL17, RPL17-C18orf325'-UTR,intron-Distal,intron-Proximal
    NIP7chr117511143475111476+5.59450400.00000HepG2RPS35'-UTR,intron-Distal
    NIP7chr39633635496336358-3.5263944.21958HepG2MTRNR2L125'-UTR
    NIP7chr204789688847896896+4.67626400.00000HepG2ZFAS1intron-Distal
    NIP7chr9125642542125642582-5.7203616.44214HepG2RC3H2intron-Distal
    NIP7chr194999322349993266+3.06542400.00000HepG2RPL13A3'-UTR,CDS,intron-Proximal
    NIP7chrX132887933132888019-3.0224115.57919HepG2GPC3CDS,intron-Distal
    NIP7chr2216279559216279586-3.1849914.93319HepG2FN1CDS,intron-Distal,intron-Proximal
    NIP7chr2216262467216262515-3.0990716.24983HepG2FN1CDS,intron-Distal
    NIP7chr1173835467173835501-5.1174110.21195HepG2GAS5intron-Distal
    NIP7chr172669721526697286-3.545443.28276HepG2VTN3'-UTR,5'-UTR,CDS,intron-Distal
    NIP7chr10101996829101996901-3.972658.27774HepG2CWF19L1intron-Distal
    NIP7chr117511147675111480+4.2357444.58381HepG2RPS35'-UTR,intron-Distal
    NIP7chr79847931898479375+4.2872316.04677HepG2TRRAPintron-Distal
    NIP7chr116262216062622167-5.0732642.08422HepG2SNHG1intron-Distal
    NIP7chr201794351017943516-4.95819400.00000HepG2OVOL2, SNX5intron-Distal
    NIP7chr117511553875115578+3.4871051.35162HepG2RPS3intron-Distal
    NIP7chr2216300424216300441-3.0210814.61363HepG2FN1CDS,intron-Distal
    NIP7chr172704758227047601+5.54304400.00000HepG2RPL23A5'-UTR,intron-Distal
    NIP7chr39633635896336367-4.1161780.17855HepG2MTRNR2L125'-UTR
    NIP7chr81170459311704667-4.186165.11664HepG2CTSB3'-UTR,CDS,intron-Distal,intron-Proximal
    NIP7chr2024436302443682-4.60383400.00000HepG2SNRPBintron-Distal,intron-Proximal
    NIP7chr202361452823614587-3.200497.99658HepG2CST33'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal
    NIP7chr3186336368186336385+4.3216444.45562HepG2AHSGCDS
    NIP7chr14524216745242197+6.27813400.00000HepG2RPS8intron-Distal
    NIP7chr152534672225346813+3.697286.62875HepG2SNHG14intron-Distal
    NIP7chr223971122239711272-3.21589400.00000HepG2RPL3intron-Distal,intron-Proximal
    NIP7chr201794346117943465-3.06891400.00000HepG2SNX5, OVOL2intron-Distal
    NIP7chr72289623122896278+3.9943612.63210HepG2AC005682.5intron-Distal,intron-Proximal
    NIP7chr202361432623614382-3.234057.99658HepG2CST33'-UTR,intron-Distal
    NIP7chr2234197529234197584+3.9395214.18750HepG2ATG16L1intron-Distal
    NIP7chr184701806647018087-3.9483064.36247HepG2RPL175'-UTR,intron-Distal,intron-Proximal
    NIP7chr152523024625230297+3.704308.28330HepG2SNURF, SNHG14intron-Distal
    NIP7chr172704760127047632+5.55918400.00000HepG2RPL23A5'-UTR,intron-Distal,intron-Proximal
    NIP7chr3133475125133475172+3.4398621.65187HepG2TFCDS,intron-Distal,intron-Proximal
    NIP7chr9124083544124083595+3.431423.90847HepG2GSNCDS,intron-Proximal
    NIP7chr47427930574279319+3.6368722.48366HepG2ALB3'-UTR,CDS
    NIP7chr5137896733137896745-6.2287263.15294HepG2HSPA9intron-Distal
    NIP7chr201794347717943510-4.67557400.00000HepG2OVOL2, SNX5intron-Distal
    NIP7chr1230846051230846093-3.1436819.05314HepG2AGTCDS,intron-Distal
    NIP7chr13144101131441074-5.9676361.79148HepG2PUM1intron-Distal,intron-Proximal
    NIP7chr1173835160173835166-4.7943539.24246HepG2GAS5intron-Distal
    NIP7chr152533919225339224+3.6741917.73587HepG2SNHG14intron-Distal,intron-Proximal
    NIP7chr2216271021216271062-3.0790022.36944HepG2FN1CDS,intron-Distal
    NIP7chr13144107431441082-5.8666545.74963HepG2PUM1intron-Distal,intron-Proximal
    NIP7chr177455719474557198+6.92207400.00000HepG2SNHG16intron-Distal
    NIP7chr9125642502125642542-4.104174.31902HepG2RC3H2intron-Distal,intron-Proximal
    NIP7chr132782920327829214+4.3621636.63136HepG2RPL21intron-Distal
    NIP7chr184701562847015679-3.7166433.85232HepG2RPL17-C18orf32, RPL17intron-Distal,intron-Proximal
    NIP7chr63180306031803063+4.01533400.00000HepG2C6orf48intron-Distal,intron-Proximal
    NIP7chr5137896768137896787-4.94080400.00000HepG2HSPA9intron-Distal
    NIP7chr172705070727050734+5.4131650.84448HepG2RPL23ACDS,intron-Proximal
    NIP7chr2203156100203156143+5.8751819.56989HepG2NOP58intron-Distal
    NIP7chr119345467893454791+4.0635233.20360HepG2KIAA1731intron-Distal
    NIP7chr3186336324186336332+3.2772432.25305HepG2AHSGCDS,intron-Proximal
    NIP7chrX132887673132887718-3.2022710.88399HepG2GPC3CDS,intron-Distal
    NIP7chr111082302410823061-3.2518927.67178HepG2EIF4G2intron-Distal
    NIP7chr63180306331803066+4.03900400.00000HepG2C6orf485'-UTR,intron-Distal,intron-Proximal
    NIP7chr1966822286682236-3.224928.34038HepG2C3CDS,intron-Distal




    9 proteins are bound to NIP7 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr166937617869376251+3'-UTR4.204764.19989HepG2UPF1
    chr166937634269376385+3'-UTR6.1518924.56952K562PABPC4
    chr166937542269375471+3'-UTR,CDS,intron-Proximal3.037403.05068HepG2U2AF2
    chr166937635369376422+3'-UTR4.368344.68979HepG2UPF1
    chr166937463669374698+3'-UTR,intron-Distal4.786895.81672HepG2U2AF2
    chr166937383069373962+CDS,intron-Proximal4.7988212.14514HepG2AQR
    chr166937378469373830+CDS,intron-Proximal3.378833.81059HepG2AQR
    chr166937417869374236+CDS,intron-Proximal3.346004.71371HepG2GRWD1
    chr166937379969373944+CDS,intron-Proximal4.646085.07796HepG2SF3B4
    chr166937411669374173+CDS3.686953.06853K562LIN28B
    chr166937379269373893+intron-Proximal4.737077.46483HepG2PRPF8
    chr166937380569373904+intron-Proximal4.299663.70701HepG2PRPF4
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein NIP7 and its RNA.



    Diffrential Expression
    • 925 differentially expressed genes after Knockdown/Knockout NIP7 protein.  





    • 108 RBPs can affect the levels of NIP7.  







    925 differentially expressed genes after Knockdown/Knockout NIP7 protein :

    Only display 100 entries as example. Please click "View All" button to see all 925 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    DHX33ENSG00000005100.8724.914501046.08140-0.529104.764902.88920HepG2NIP7
    SPPL2BENSG00000005206.12363.70500237.664000.613702.774401.35450HepG2NIP7
    ZFXENSG00000005889.111191.64130631.104800.9169013.7121010.87070HepG2NIP7
    ASB4ENSG00000005981.852.65660101.49930-0.946803.131601.62350HepG2NIP7
    MAP3K9ENSG00000006432.11235.96750356.53250-0.595403.675602.03330HepG2NIP7
    KIAA0100ENSG00000007202.102320.841202904.13050-0.323502.988601.52240HepG2NIP7
    TSR3ENSG00000007520.3195.68370113.457400.786303.374901.81430HepG2NIP7
    MGST1ENSG00000008394.8979.525301310.60580-0.420103.531501.92440HepG2NIP7
    ST3GAL1ENSG00000008513.10794.916701034.11590-0.379502.890001.44070HepG2NIP7
    BAZ1BENSG00000009954.61905.398802415.83420-0.342403.073201.58300HepG2NIP7
    NCAPD2ENSG00000010292.82402.335603508.10030-0.546306.997204.71650HepG2NIP7
    FYNENSG00000010810.13516.06860719.72680-0.479903.809502.12990HepG2NIP7
    TSPAN9ENSG00000011105.71166.52500777.663500.584906.261804.13230HepG2NIP7
    SYT7ENSG00000011347.5262.36360161.750600.697703.397501.83270HepG2NIP7
    ANLNENSG00000011426.61487.891702145.39270-0.528003.027901.55170HepG2NIP7
    WIZENSG00000011451.13371.35650250.124900.570103.094301.59890HepG2NIP7
    RABGAP1ENSG00000011454.12496.25890873.98590-0.816509.562807.02240HepG2NIP7
    BRCA1ENSG00000012048.15637.85280837.84470-0.393502.805401.37740HepG2NIP7
    SRCIN1ENSG00000017373.11272.34370127.349501.096508.379605.95410HepG2NIP7
    CYP24A1ENSG00000019186.5174.53610368.71740-1.0790010.153407.55690HepG2NIP7
    PLEKHB1ENSG00000021300.91036.476901360.90480-0.392903.485901.89600HepG2NIP7
    RNH1ENSG00000023191.12549.64690351.542200.644702.706401.30830HepG2NIP7
    DEPDC1ENSG00000024526.12368.67790543.70800-0.560503.913202.20620HepG2NIP7
    KPNA6ENSG00000025800.9939.456001406.70140-0.582406.292404.14990HepG2NIP7
    VCANENSG00000038427.111967.172902710.93500-0.462703.015701.54230HepG2NIP7
    TDP1ENSG00000042088.9294.54010461.10900-0.646604.949103.04250HepG2NIP7
    SCML1ENSG00000047634.102386.095401839.005500.375603.972402.25580HepG2NIP7
    USP28ENSG00000048028.7488.27660685.58080-0.489603.389701.82700HepG2NIP7
    ZNF800ENSG00000048405.5311.14380216.734000.521602.949701.49120HepG2NIP7
    FOXC1ENSG00000054598.566.7380026.341101.341103.448601.87190HepG2NIP7
    ITIH4ENSG00000055955.11101.7153034.644401.553705.792603.73150HepG2NIP7
    ITIH1ENSG00000055957.6509.36300273.141100.898908.703306.24650HepG2NIP7
    DCBLD2ENSG00000057019.112121.217002784.01290-0.392303.110801.61000HepG2NIP7
    F7ENSG00000057593.9710.98950445.645500.673805.813303.74780HepG2NIP7
    CREB3L3ENSG00000060566.9377.32310159.580801.2414012.558609.76690HepG2NIP7
    MPC1ENSG00000060762.141400.08950984.069100.508605.256403.29090HepG2NIP7
    ACAA1ENSG00000060971.132778.611401972.173500.494505.548203.53460HepG2NIP7
    DGAT2ENSG00000062282.10408.20940581.42210-0.510303.309101.76410HepG2NIP7
    CSENSG00000062485.143971.580105021.29730-0.338303.228801.70140HepG2NIP7
    ISOC2ENSG00000063241.3402.85510271.957700.566803.081901.58950HepG2NIP7
    EPN1ENSG00000063245.10785.95120537.183500.548904.182602.42120HepG2NIP7
    TM7SF3ENSG00000064115.61107.983801415.24050-0.353102.832501.39680HepG2NIP7
    ABCA7ENSG00000064687.8940.87720606.764900.632803.222801.69730HepG2NIP7
    SLC9A3R2ENSG00000065054.9283.68840177.990200.672403.356101.80030HepG2NIP7
    SPENENSG00000065526.61305.485001675.88340-0.360303.036101.55640HepG2NIP7
    ASPMENSG00000066279.12939.588501340.29570-0.512504.744202.87140HepG2NIP7
    ACSM2BENSG00000066813.10761.54250296.528901.3607021.5312018.17120HepG2NIP7
    PKMENSG00000067225.1313825.8167019291.52050-0.480606.568104.36840HepG2NIP7
    PLEKHH3ENSG00000068137.10182.85810109.208700.743503.139501.63020HepG2NIP7
    VPS35ENSG00000069329.112195.392102843.49420-0.373203.508701.90990HepG2NIP7
    RORAENSG00000069667.111208.55490932.355400.374202.732401.32720HepG2NIP7
    RNF126ENSG00000070423.13344.30640184.355000.901103.128101.62180HepG2NIP7
    JMJD6ENSG00000070495.10271.54370487.20240-0.843307.604205.26950HepG2NIP7
    NDST1ENSG00000070614.102178.031601712.215600.347102.734901.32770HepG2NIP7
    CDC42ENSG00000070831.111530.428103063.16060-1.0011020.6957017.44970HepG2NIP7
    SLC12A3ENSG00000070915.563.0687024.522001.362703.939802.22820HepG2NIP7
    MAP4K4ENSG00000071054.117856.0389011024.33430-0.488806.296804.14990HepG2NIP7
    MBD3ENSG00000071655.13445.08910200.701901.148902.815201.38470HepG2NIP7
    RHOBTB1ENSG00000072422.12752.873401130.61590-0.586606.197004.07510HepG2NIP7
    ASAH2CENSG00000072444.1021.4574060.30060-1.490703.660402.02390HepG2NIP7
    HMMRENSG00000072571.15519.97330821.61710-0.660003.330501.78140HepG2NIP7
    NFATC3ENSG00000072736.141814.596302294.07650-0.338302.719601.31680HepG2NIP7
    NDE1ENSG00000072864.8720.91150961.92300-0.416103.084501.59090HepG2NIP7
    CYP2W1ENSG00000073067.9338.49630204.017900.730303.100001.60340HepG2NIP7
    VPS9D1ENSG00000075399.8256.23020155.650000.719003.772502.10360HepG2NIP7
    FOSL2ENSG00000075426.7643.76130900.75980-0.484603.705402.05470HepG2NIP7
    MCM6ENSG00000076003.4516.37850687.60290-0.413103.041801.56030HepG2NIP7
    UNGENSG00000076248.6675.72320966.42830-0.516205.044103.11720HepG2NIP7
    SPAG5ENSG00000076382.121025.921801639.04070-0.675909.003906.53050HepG2NIP7
    SNRPAENSG00000077312.4552.81570751.83430-0.443603.354801.79970HepG2NIP7
    POLD3ENSG00000077514.4274.94790386.42090-0.491002.823401.38980HepG2NIP7
    FGFR1ENSG00000077782.151098.681501711.01430-0.639108.152305.75610HepG2NIP7
    CEACAM1ENSG00000079385.172838.798803816.51260-0.427004.539002.71680HepG2NIP7
    PGM1ENSG00000079739.112130.143801624.999400.390403.668102.02740HepG2NIP7
    EPB41L2ENSG00000079819.122905.718603832.56860-0.399402.852101.41120HepG2NIP7
    AFPENSG00000081051.3222198.91500120287.620800.8853021.4075018.08900HepG2NIP7
    GEMIN5ENSG00000082516.8535.59970772.40010-0.528204.238502.46630HepG2NIP7
    CYLDENSG00000083799.13523.08700382.642300.451003.047101.56390HepG2NIP7
    HALENSG00000084110.61240.24420552.703801.1659022.4744019.06870HepG2NIP7
    AKR1B1ENSG00000085662.9895.815601200.87480-0.422803.664602.02640HepG2NIP7
    USP40ENSG00000085982.91299.953401021.980300.347002.745401.33490HepG2NIP7
    RAD54LENSG00000085999.7339.17710546.87620-0.689205.883703.80480HepG2NIP7
    SEPHS1ENSG00000086475.10721.72190989.57280-0.455403.690402.04390HepG2NIP7
    MMP2ENSG00000087245.8164.30430260.29220-0.663803.421201.85010HepG2NIP7
    AURKAENSG00000087586.131516.285502220.63450-0.550406.490204.30920HepG2NIP7
    PTPN4ENSG00000088179.4619.34960461.644800.423903.043401.56080HepG2NIP7
    TPX2ENSG00000088325.112850.931703850.18700-0.433504.624402.78380HepG2NIP7
    PEBP1ENSG00000089220.48194.776506230.988800.395104.159702.40730HepG2NIP7
    BIRC5ENSG00000089685.101069.943501463.32340-0.451704.298002.52010HepG2NIP7
    CHRDENSG00000090539.111162.29700779.269200.576702.782701.36080HepG2NIP7
    RAB11FIP3ENSG00000090565.111395.562001020.735700.451103.798102.12430HepG2NIP7
    ZNF268ENSG00000090612.16596.07470447.624300.413103.027601.55170HepG2NIP7
    KIF4AENSG00000090889.10579.11050885.60970-0.612805.831803.76420HepG2NIP7
    LAMB1ENSG00000091136.96217.499807694.39430-0.307502.753001.34000HepG2NIP7
    TFENSG00000091513.10202702.55880142380.065200.509506.294604.14990HepG2NIP7
    APOHENSG00000091583.647704.5381032220.430300.566109.422306.90120HepG2NIP7
    G2E3ENSG00000092140.10941.270501587.18530-0.753802.716901.31500HepG2NIP7
    SEMA6AENSG00000092421.12366.41790544.13780-0.570504.232102.46410HepG2NIP7
    SNAP23ENSG00000092531.5804.213001161.40720-0.530205.046803.11820HepG2NIP7
    CBX5ENSG00000094916.91373.394001823.03460-0.408603.321801.77540HepG2NIP7
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    108 RBPs can affect the gene expression of NIP7 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    NIP7ENSG00000132603.91196.49350971.132400.301003.492802.82330HepG2ACO1
    NIP7ENSG00000132603.92246.214801487.112400.594905.461504.74380HepG2AKAP1
    NIP7ENSG00000132603.9773.738801230.51470-0.669305.184404.12690HepG2ASCC1
    NIP7ENSG00000132603.91372.189801872.57990-0.448508.084807.01110HepG2AUH
    NIP7ENSG00000132603.91450.535101154.194100.329602.149501.32740HepG2BCCIP
    NIP7ENSG00000132603.9685.433601002.98480-0.549203.813302.77380HepG2BCLAF1
    NIP7ENSG00000132603.91256.49740938.209200.421303.649202.97290HepG2BOP1
    NIP7ENSG00000132603.9565.05040790.65050-0.484703.919602.46090HepG2BUD13
    NIP7ENSG00000132603.91207.71660896.094400.430502.030201.38050HepG2CNOT7
    NIP7ENSG00000132603.9430.94660861.32560-0.9990012.6698011.31880HepG2CPSF6
    NIP7ENSG00000132603.9955.86460713.052700.422703.555302.35120HepG2CSTF2
    NIP7ENSG00000132603.91083.825601627.92330-0.5869013.6879012.25170HepG2DAZAP1
    NIP7ENSG00000132603.91059.50950898.160400.238302.386401.60680HepG2DDX19B
    NIP7ENSG00000132603.9378.48380887.75460-1.229909.550608.37090HepG2DDX21
    NIP7ENSG00000132603.91135.36060868.084200.387103.341202.33300HepG2DDX24
    NIP7ENSG00000132603.9825.653101223.53690-0.567404.374203.61170HepG2DDX6
    NIP7ENSG00000132603.9627.51960890.03520-0.504205.871804.88010HepG2DNAJC21
    NIP7ENSG00000132603.9267.026301176.48670-2.1394022.7752021.18280HepG2EIF2S1
    NIP7ENSG00000132603.9902.61860672.165800.425202.996302.06070HepG2EIF3D
    NIP7ENSG00000132603.9792.117901265.76190-0.676204.946504.04330HepG2EIF4B
    NIP7ENSG00000132603.91174.240501538.55020-0.389803.202502.32960HepG2EIF4G2
    NIP7ENSG00000132603.91520.462402150.00710-0.499809.284408.29000HepG2ETF1
    NIP7ENSG00000132603.91544.17460948.973900.702309.352407.84100HepG2EWSR1
    NIP7ENSG00000132603.9323.07650789.64030-1.2893021.4929019.41200HepG2FUBP3
    NIP7ENSG00000132603.9607.33320976.37530-0.684905.981505.06530HepG2GPKOW
    NIP7ENSG00000132603.9668.54720898.56200-0.426603.373702.66850HepG2HNRNPA1
    NIP7ENSG00000132603.9797.85080999.48500-0.325102.203601.57730HepG2HNRNPC
    NIP7ENSG00000132603.91148.461901630.14650-0.505308.780407.59300HepG2HNRNPF
    NIP7ENSG00000132603.91227.718801482.88610-0.272403.320702.58750HepG2HNRNPL
    NIP7ENSG00000132603.9515.10230931.77330-0.855109.575908.48550HepG2HNRNPLL
    NIP7ENSG00000132603.9928.88200735.210000.337202.656301.72170HepG2HNRNPM
    NIP7ENSG00000132603.9837.38780992.87700-0.245702.032901.50350HepG2HNRNPU
    NIP7ENSG00000132603.91021.604301605.23360-0.6519010.219508.91180HepG2IGF2BP1
    NIP7ENSG00000132603.9810.286301014.19080-0.323804.110103.23370HepG2ILF2
    NIP7ENSG00000132603.91364.08550992.952200.458004.155502.66770HepG2LIN28B
    NIP7ENSG00000132603.92431.021001319.402300.8816011.145709.94180HepG2MATR3
    NIP7ENSG00000132603.9970.43890703.520800.463902.433901.44440HepG2METAP2
    NIP7ENSG00000132603.9642.14210950.29720-0.565503.103402.07300HepG2MTPAP
    NIP7ENSG00000132603.9540.97330724.17260-0.420802.993701.73150HepG2NAA15
    NIP7ENSG00000132603.9439.69760855.11540-0.9596012.9343010.10580HepG2NIP7
    NIP7ENSG00000132603.9480.39430826.19840-0.782308.147106.91290HepG2NSUN2
    NIP7ENSG00000132603.9646.438501202.97960-0.896007.394606.22690HepG2PABPC4
    NIP7ENSG00000132603.9612.038201050.61440-0.779505.869204.40220HepG2PCBP2
    NIP7ENSG00000132603.9689.35360885.56680-0.361403.367202.56050HepG2PPIL4
    NIP7ENSG00000132603.91183.614701540.96820-0.380603.472602.81500HepG2PUF60
    NIP7ENSG00000132603.91229.731201634.62200-0.410604.634103.77710HepG2PUM2
    NIP7ENSG00000132603.9773.44900989.16200-0.354904.053103.33310HepG2PUS1
    NIP7ENSG00000132603.9889.591001324.23340-0.573904.258603.50800HepG2QKI
    NIP7ENSG00000132603.92499.293301797.000800.475808.075307.29850HepG2RBM22
    NIP7ENSG00000132603.9886.571801201.75280-0.438802.568701.91550HepG2RBM25
    NIP7ENSG00000132603.91786.768701140.392800.647707.526705.87650HepG2RBM27
    NIP7ENSG00000132603.91508.239401073.603300.490304.531803.13980HepG2RPS5
    NIP7ENSG00000132603.9691.17490884.20030-0.355303.841303.10340HepG2SAFB2
    NIP7ENSG00000132603.91748.22830955.400800.871608.209807.00100HepG2SF3A3
    NIP7ENSG00000132603.91078.739301477.60840-0.453908.003806.90480HepG2SLBP
    NIP7ENSG00000132603.91269.655601031.126100.300103.818503.08320HepG2SMN1
    NIP7ENSG00000132603.91443.007302029.63350-0.4921010.502209.69600HepG2SRFBP1
    NIP7ENSG00000132603.92074.221501328.651700.642505.026004.43810HepG2SRSF1
    NIP7ENSG00000132603.91256.388401601.54880-0.350204.482003.62880HepG2SRSF7
    NIP7ENSG00000132603.91307.167001762.18000-0.430907.601706.83310HepG2SSB
    NIP7ENSG00000132603.91209.19290891.103500.440303.102401.74550HepG2SSRP1
    NIP7ENSG00000132603.92110.611001730.353600.286503.384602.71020HepG2SUCLG1
    NIP7ENSG00000132603.9415.67030719.56620-0.791708.868307.25860HepG2SUPT6H
    NIP7ENSG00000132603.9632.970201129.71280-0.835708.018106.96310HepG2SUPV3L1
    NIP7ENSG00000132603.9499.10530908.20210-0.8637010.421109.14890HepG2TARDBP
    NIP7ENSG00000132603.9873.474701097.37410-0.329202.156501.41650HepG2TIA1
    NIP7ENSG00000132603.9664.66180964.76200-0.537606.281705.58350HepG2TIAL1
    NIP7ENSG00000132603.9772.20450973.39000-0.334003.572602.94970HepG2TRIM56
    NIP7ENSG00000132603.91267.19720911.515100.475204.166403.40280HepG2U2AF1
    NIP7ENSG00000132603.92327.05820818.031601.5082077.2369074.78540HepG2UTP3
    NIP7ENSG00000132603.9853.470401065.86070-0.320603.664402.90930HepG2ZC3H8
    NIP7ENSG00000132603.91228.03080931.862800.398106.208205.47360HepG2ZNF622
    NIP7ENSG00000132603.9996.08350638.173400.642207.113705.17220K562AARS
    NIP7ENSG00000132603.9879.901901289.90850-0.551909.603607.79430K562BCLAF1
    NIP7ENSG00000132603.9520.53020768.67720-0.562404.430103.31740K562BOP1
    NIP7ENSG00000132603.9322.14430459.00060-0.510803.051001.93680K562CCAR1
    NIP7ENSG00000132603.91121.607101632.69340-0.541704.089702.27840K562CKAP4
    NIP7ENSG00000132603.9447.55140817.32710-0.8689012.0024010.35870K562CPSF6
    NIP7ENSG00000132603.9736.26180978.58810-0.410503.939202.64630K562CSTF2
    NIP7ENSG00000132603.9923.575901148.07770-0.313903.086301.80340K562DDX21
    NIP7ENSG00000132603.9403.67970554.19470-0.457203.314802.16280K562DDX3X
    NIP7ENSG00000132603.92403.872501354.001900.828008.771407.69220K562DDX47
    NIP7ENSG00000132603.9369.56860513.83290-0.475502.922401.55230K562DHX30
    NIP7ENSG00000132603.9888.41970677.426200.391103.550902.54160K562DKC1
    NIP7ENSG00000132603.9432.44420608.69470-0.493204.892303.26320K562EIF2S1
    NIP7ENSG00000132603.91184.064701816.53020-0.617407.840606.72110K562EIF2S2
    NIP7ENSG00000132603.91525.47810841.489400.8581018.1752016.07270K562EIF3G
    NIP7ENSG00000132603.9738.72590578.981600.351402.262701.51830K562EIF4A3
    NIP7ENSG00000132603.9698.77930991.18510-0.504304.440202.79270K562EXOSC5
    NIP7ENSG00000132603.9671.32660900.25070-0.423303.521001.70220K562FASTKD2
    NIP7ENSG00000132603.9596.63150831.60570-0.479103.647502.66160K562FMR1
    NIP7ENSG00000132603.9441.06710704.85850-0.676305.802104.42520K562FTO
    NIP7ENSG00000132603.9530.50790743.93980-0.487803.944102.31170K562FUS
    NIP7ENSG00000132603.91697.53060602.113901.4952022.9433021.31620K562FXR1
    NIP7ENSG00000132603.9439.51670780.34850-0.828209.707208.21010K562GPKOW
    NIP7ENSG00000132603.9420.88810680.60510-0.693402.728901.52080K562HNRNPA2B1
    NIP7ENSG00000132603.9388.16200698.53140-0.847709.584308.52760K562HNRNPC
    NIP7ENSG00000132603.91465.708501006.869500.541604.714603.46890K562HNRNPM
    NIP7ENSG00000132603.9367.22140666.31450-0.859606.595705.08360K562KRR1
    NIP7ENSG00000132603.91247.20210825.096900.596006.817905.47010K562MAGOH
    NIP7ENSG00000132603.91137.07710823.428700.465504.825003.56950K562MATR3
    NIP7ENSG00000132603.9585.81020761.70630-0.378802.627501.77810K562METAP2
    NIP7ENSG00000132603.9754.207201076.08070-0.512809.000707.75920K562NSUN2
    NIP7ENSG00000132603.9752.404101260.78700-0.744708.030206.61460K562PCBP3
    NIP7ENSG00000132603.9884.275401232.29120-0.478803.839001.96640K562PKM
    NIP7ENSG00000132603.9721.30400967.10220-0.423102.466301.71280K562POLR2G
    NIP7ENSG00000132603.91632.45810925.707900.8183011.8293010.26750K562PRPF8
    NIP7ENSG00000132603.91362.86540801.630600.7655011.6974010.38810K562PTBP1
    NIP7ENSG00000132603.93044.826202338.591700.380602.494901.72150K562PUF60
    NIP7ENSG00000132603.9461.91920630.37020-0.448603.230301.78590K562RBM25
    NIP7ENSG00000132603.91120.46030808.916700.469903.962502.62430K562NELFE
    NIP7ENSG00000132603.91523.86570943.087500.692207.308705.96550K562RPS19
    NIP7ENSG00000132603.91102.69780861.599700.355802.837001.74100K562SAFB
    NIP7ENSG00000132603.9547.22260742.13110-0.439502.581501.64400K562SF3B1
    NIP7ENSG00000132603.91321.11830785.861000.7493011.5936010.15670K562SRSF1
    NIP7ENSG00000132603.9766.221001024.65660-0.419304.369102.87680K562SRSF7
    NIP7ENSG00000132603.9426.60650748.38970-0.810903.226901.65140K562SUPT6H
    NIP7ENSG00000132603.9608.10730896.55320-0.560103.593602.41970K562SUPV3L1
    NIP7ENSG00000132603.91789.98240969.979500.8838018.9818016.91200K562SYNCRIP
    NIP7ENSG00000132603.9460.38490639.80340-0.474803.199202.16500K562TRIM56
    NIP7ENSG00000132603.91224.550001544.42000-0.334803.655302.18480K562TROVE2
    NIP7ENSG00000132603.9825.29470665.194300.311002.355701.61460K562U2AF2
    NIP7ENSG00000132603.9555.94440948.75710-0.771106.095304.51380K562UCHL5
    NIP7ENSG00000132603.9816.621901140.98590-0.482504.881903.95780K562UPF1
    NIP7ENSG00000132603.9683.12930976.31420-0.515203.160702.22870K562WDR3
    NIP7ENSG00000132603.91380.792701015.194600.443605.104103.98470K562WDR43
    NIP7ENSG00000132603.91597.01500814.872000.970606.486003.82180K562XRCC6
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    36 alternative splicing events after Knockdown/Knockout NIP7 protein :

    Only display 100 entries as example. Please click "View All" button to see all 36 entries.     

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEUBE2D2ENSG00000131508.11chr5+1389418281389419921389407501389414001389799561389800200.122000.000070.09536includedHepG2NIP7
    SEZC3H4ENSG00000130749.5chr19-4761415147614213475976454759786547615404476155040.388000.000030.06007includedHepG2NIP7
    SEKLF3ENSG00000109787.8chr4+3868958338689807386822073868230338690205386906920.129000.000050.08244includedHepG2NIP7
    SETRIM33ENSG00000197323.6chr1-1149630011149630731149528051149529381149640571149642580.222000.000060.08617includedHepG2NIP7
    SEFIP1L1ENSG00000145216.11chr4+5424523954245284542440055424409054245391542454310.389000.000010.01514includedHepG2NIP7
    SESH3D19ENSG00000109686.12chr4-1520653711520654401520650611520652021520690731520693380.197000.000050.08244includedHepG2NIP7
    SERSPRY1ENSG00000159579.9chr16+5724150457241597572385085723892057241969572420220.079000.000060.08398includedHepG2NIP7
    SEDHRS2ENSG00000100867.10chr14+2411087424111063241090022410910424112360241124280.055000.000050.08244includedHepG2NIP7
    SELUC7LENSG00000007392.12chr16-2585992586632580762581872706472707460.230000.000010.02492includedHepG2NIP7
    SETFPIENSG00000003436.10chr2-1883852681883853451883683741883684971883940901883942120.275000.000010.02581includedHepG2NIP7
    SEXPO1ENSG00000082898.12chr2-6175240461752468617497456174981861753554617536560.085000.000000.00101includedHepG2NIP7
    SEITGB5ENSG00000082781.7chr3-1245974491245975861245922921245923781246057771246061440.285000.000070.09032includedHepG2NIP7
    SEPNISRENSG00000132424.10chr6-9986422499864304998624479986256699873090998731840.196000.000010.02492includedHepG2NIP7
    SEPDK1ENSG00000152256.9chr2+1734274681734275281734269471734270191734292301734294150.175000.000010.02622includedHepG2NIP7
    SEAURKBENSG00000178999.8chr17-8113271811332781110558111158811349481135420.065000.000040.08185includedHepG2NIP7
    SEUSP31ENSG00000103404.10chr16-2311865123118735231177192311780823119366231195040.275000.000010.02492includedHepG2NIP7
    SEPOM121ENSG00000196313.7chr7+7238430172384365723614717236164972396799723970150.196000.000000.00099includedHepG2NIP7
    SESPOPLENSG00000144228.4chr2+1393120081393121051393101231393102511393165911393167690.157000.000000.01498includedHepG2NIP7
    SERSRC2ENSG00000111011.13chr12-1229983131229984211229956551229957351229996511229997740.109000.000060.08398includedHepG2NIP7
    SESAT1ENSG00000130066.12chrX+238024102380252023801916238020002380344423803546-0.067000.000000.00040excludedHepG2NIP7
    SECOL18A1ENSG00000182871.10chr21+468897624688990046888155468887004689380846893895-0.160000.000000.00310excludedHepG2NIP7
    SEBPIFB2ENSG00000078898.6chr20+315960053159618431595405315955663159634631596489-0.353000.000000.00000excludedHepG2NIP7
    SEPTP4A1ENSG00000112245.6chr6+642422416424245064237723642379896426020464260398-0.334000.000000.00310excludedHepG2NIP7
    SESLC25A6ENSG00000169100.8chrX-150908415091831508133150862015107911510996-0.052000.000000.00950excludedHepG2NIP7
    MXEMDKENSG00000110492.11chr11+46403606464036834640384346404011464023054640273346404136464042980.083000.000110.039001includedHepG2NIP7
    MXESLC6A8ENSG00000130821.11chrX+1529593591529594721529596581529597221529589461529590411529597981529599010.176000.000000.001031includedHepG2NIP7
    MXESLC39A14ENSG00000104635.9chr8+22267458222676282226954922269719222658222226600922272292222724150.070000.000110.039001includedHepG2NIP7
    MXEABATENSG00000183044.7chr16+882955588296668839857883995587684218768568884196488419940.313000.000000.000251includedHepG2NIP7
    MXEEIF4A2ENSG00000156976.10chr3+1865022201865023021865023521865024851865013651865014281865036711865038400.096000.000310.097781includedHepG2NIP7
    MXEEIF4A2ENSG00000156976.10chr3+1865022171865023021865023521865024851865013851865014281865036711865038400.168000.000210.070541includedHepG2NIP7
    MXERPL27AENSG00000166441.8chr11+870555287056288706264870643987047488704812870722487073940.133000.000000.000021includedHepG2NIP7
    MXERPS5ENSG00000083845.4chr19+5890434258904552589047255890485458899503588996125890586358905962-0.136000.000000.000102includedHepG2NIP7
    MXETACC3ENSG00000013810.14chr4+17254541725597172943417305141725147172531017326131732689-0.197000.000000.002142includedHepG2NIP7
    MXEBPIFB2ENSG00000078898.6chr20+3160644231606628316068673160692131606064316061563160738531607556-0.157000.000000.000002includedHepG2NIP7
    MXESERPINA1ENSG00000197249.8chr14-9484580094845948948489289484957894844725948449779485489694854997-0.254000.000000.000002includedHepG2NIP7
    MXERPL18ENSG00000063177.8chr19-4911933549119459491199824912008149119133491192034912057249120680-0.150000.000000.000002includedHepG2NIP7





    1 RBPs can affect the splicing of NIP7 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    RINIP7ENSG00000132603.9chr16+6937390869374235693739086937399569374096693742350.070000.000000.00000includedK562AQR

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    No autoregularoty alternative splicing events between protein NIP7 and its RNA.