AC005682.5

General Information

Gene Name       : AC005682.5
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: AC005682.5)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for AC005682.5 is not avaliable on ENCORE database.



Proteins bound to RNA
  • AC005682.5 RNA is bound by 16 proteins.  







eCLIP assay for AC005682.5 is not avaliable on ENCORE database.





16 proteins are bound to AC005682.5 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr72289629522896308+intron-Distal5.61722400.00000K562SMNDC1
chr72289625822896306+intron-Distal,intron-Proximal3.62121400.00000HepG2DKC1
chr72289622722896307+intron-Distal,intron-Proximal3.1623615.79528K562UTP18
chr72289409822894201+intron-Distal3.376573.82723K562XRN2
chr72289626922896303+intron-Distal,intron-Proximal6.33045400.00000HepG2NOLC1
chr72289625622896306+intron-Distal,intron-Proximal3.1482515.22561HepG2SMNDC1
chr72289629522896306+intron-Distal3.40668400.00000K562SF3B4
chr72289623122896278+intron-Distal,intron-Proximal3.9943612.63210HepG2NIP7
chr72289426222894314+intron-Distal3.337873.47285K562PRPF8
chr72289797122898085+intron-Distal4.2039816.01927K562ZC3H11A
chr72289628822896304+intron-Distal4.4482913.17745HepG2LARP7
chr72289625722896308+intron-Distal,intron-Proximal4.552898.51748K562NIPBL
chr72289410922894155+intron-Distal4.682757.75987HepG2XRN2
chr72289626522896302+intron-Distal,intron-Proximal3.95666400.00000K562PTBP1
chr72289626022896295+intron-Distal,intron-Proximal5.45926400.00000K562SMNDC1
chr72289625022896306+intron-Distal,intron-Proximal4.86043400.00000K562AATF
chr72289625622896295+intron-Distal,intron-Proximal3.32389400.00000K562SF3B4
chr72289625822896305+intron-Distal,intron-Proximal4.9307814.29655K562ZC3H8
chr72289623122896250+intron-Proximal5.0643614.97969K562AATF
chr72289387522893960+intron-Proximal3.405394.95054HepG2NCBP2
chr72289617122896200+intron-Proximal3.307383.94787K562AQR
chr72289389022893946+intron-Proximal4.3518523.29150HepG2PRPF8
chr72289620022896220+intron-Proximal3.860594.00320K562AQR
chr72289389922893947+intron-Proximal4.0064013.11100K562AQR
chr72289613322896225+intron-Proximal4.3674913.40522HepG2PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for AC005682.5 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for AC005682.5 is not available on ENCORE database.

  • 17 RBPs can affect the levels of AC005682.5.  








The Knockdown/knockout RNA-Seq assay for AC005682.5 is not available on ENCORE database.





17 RBPs can affect the gene expression of AC005682.5 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
AC005682.5ENSG00000228649.46.1344043.28570-2.818904.651803.80190HepG2AUH
AC005682.5ENSG00000228649.43.5401017.38600-2.296002.021601.48620HepG2DDX6
AC005682.5ENSG00000228649.417.9699049.68380-1.467202.297001.74040HepG2ETF1
AC005682.5ENSG00000228649.434.0873011.456001.573002.768002.16000HepG2HNRNPU
AC005682.5ENSG00000228649.42.0201014.93560-2.886302.427301.79220HepG2RBM25
AC005682.5ENSG00000228649.413.6084034.97000-1.361601.929501.34680HepG2RPLP0
AC005682.5ENSG00000228649.413.9349040.73890-1.547702.433201.94610HepG2SSB
AC005682.5ENSG00000228649.4134.3551060.432101.152604.247403.54990K562AQR
AC005682.5ENSG00000228649.4185.1787093.534200.985304.670503.39160K562CELF1
AC005682.5ENSG00000228649.478.7855032.831801.262702.986601.35360K562HNRNPAB
AC005682.5ENSG00000228649.488.2637042.482001.054903.393202.20800K562HNRNPL
AC005682.5ENSG00000228649.4253.3434044.675802.5034029.1098026.50740K562HNRNPU
AC005682.5ENSG00000228649.463.1956032.447000.961602.067301.30940K562METAP2
AC005682.5ENSG00000228649.473.4236036.473501.009302.716501.97600K562NSUN2
AC005682.5ENSG00000228649.4149.3747082.997800.847703.112902.24960K562PUF60
AC005682.5ENSG00000228649.475.0726042.010500.837402.185901.44310K562RBM22
AC005682.5ENSG00000228649.411.0065042.94760-1.964204.019103.17270K562SRSF1
AC005682.5ENSG00000228649.4155.4478047.521201.7097011.8106010.13570K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for AC005682.5 is not available on ENCORE database.





1 RBPs can affect the splicing of AC005682.5 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEAC005682.5ENSG00000228649.4chr7+2289448322894583228937962289389922896140228961750.535000.001950.06523includedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for AC005682.5 is not avaliable on ENCORE database.