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RPS11



RPS11

General Information

Gene Name       : RPS11
Gene ID             : ENSG00000142534.6
Essential Gene : Yes

Functions

Localization(RBPImage: RPS11)

Domains (AlphaFold: RPS11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RPS11ENSG00000142534.67021.206718.466869.83ENCSR000AEF
HepG2RPS11ENSG00000142534.63064.502952.063008.28ENCSR985KAT
K562RPS11ENSG00000142534.66537.726155.506346.61ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
eCLIPeCLIP: 614ENCSR269AJFRPS11K562ReleasedENCAB560LKVENCSR881RJL  
knockdown followed by RNA-seq RPS11-BGKLV34-K562ENCSR193CCYRPS11K562ReleasedENCSR774AEQ   shRNAKD% = 43.5,40.9
knockdown followed by RNA-seq RPS11-BGKcLV08-K562ENCSR050ATARPS11K562ReleasedENCSR015KGT   CRISPRKD% = 41.8,45.2






  eCLIP  
  RBP    Exp_UID    Cell_Line    ENCODE_ACCESSION    Control_ENCODE_ACCESSION    ENCODE_Antibody_ID    Antibody    Lot_num    Status    Project  
RPS11614K562ENCSR269AJFENCSR881RJLENCAB560LKVA303-936A1ReleasedENCODE3


  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
RPS11ENCAB560LKVA303-936A1Released, ENCODE3BGHLV23-39, Released, ENCODE3BGKcLV08-63, NotSatisfied, ENCODE4


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RPS11K562shRNABGKLV25-51,BGKLV25-52BGKLV25-1,BGKLV25-2NotSatisfiedENCODE3
RPS11K562shRNAENCSR193CCYENCSR774AEQRPS11-BGKLV34-33B,RPS11-BGKLV34-34BNT-BGKLV34-1B,NT-BGKLV34-2B43.5,40.9ReleasedENCODE4
RPS11HepG2shRNABGHLV23-39,BGHLV23-40BGHLV23-1,BGHLV23-233.5,40.6NotSatisfiedENCODE3
RPS11K562CRISPRBGKcLV04-21,BGKcLV04-22BGKcLV04-1,BGKcLV04-23.2,23.6NotSatisfiedENCODE3
RPS11K562CRISPRBGKcLV04-21-D12,BGKcLV04-22-D12BGKcLV04-1,BGKcLV04-2NotSatisfiedENCODE3
RPS11K562CRISPRBGKcLV04-22-D12,BGKcLV04-21-D20BGKcLV04-1,BGKcLV04-2,0.0NotSatisfiedENCODE3
RPS11K562CRISPRBGKcLV04-21-D20,BGKcLV04-22-D20BGKcLV04-1,BGKcLV04-20.0,0.0NotSatisfiedENCODE3
RPS11K562CRISPRBGKcLV04-22-D20,BGKcLV04-21-D30BGKcLV04-1,BGKcLV04-20.0,NotSatisfiedENCODE3
RPS11K562CRISPRBGKcLV04-21-D30,BGKcLV04-22-D30BGKcLV04-1,BGKcLV04-2NotSatisfiedENCODE3
RPS11K562CRISPRBGKcLV04-22-D30,BGKcLV08-61BGKcLV04-1,BGKcLV04-2,37.1NotSatisfiedENCODE3
RPS11K562CRISPRBGKcLV08-61,BGKcLV08-62BGKcLV08-1,BGKcLV08-237.1,30.3NotSatisfiedENCODE4
RPS11K562CRISPRENCSR050ATAENCSR015KGTRPS11-BGKcLV08-63,RPS11-BGKcLV08-64NT-BGKcLV08-1,NT-BGKcLV08-241.8,45.2ReleasedENCODE4
RPS11HepG2CRISPRBGHcLV05-25,BGHcLV05-26BGHcLV05-1,BGHcLV05-243.0,34.3NotSatisfiedENCODE4
RPS11HepG2CRISPRBGHcLV05-25-D13,BGHcLV05-26-D13BGHcLV05-1,BGHcLV05-29.4,6.9NotSatisfiedENCODE4
RPS11HepG2CRISPRBGHcLV05-26-D13,BGHcLV05-1,BGHcLV05-26.9,NotSatisfiedENCODE4


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    RPS11: Click to RBP Image Database
  • Nuclei
  • Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • ER
  • Cytosolic
  • Cell Cortex












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    RPS11Product_ID: A303-936A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: RPS11-human    		 RPS11_Secondary_Western.png<br>Caption: Western blot following shRNA against RPS11 in HepG2 whole cell lysate using RPS11 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against RPS11. RPS11 protein appears as the green band, Tubulin serves as a control and appears in red.
    		 K562_Bethyl_A303-936A_1_RPS11.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using RPS11 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-RPS11 antibody (lanes under 'RPS11').
    		 RPS11-K562-CRISPR.png<br>Caption: Western blot following CRISPR against RPS11 in K562 whole cell lysate using RPS11 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against RPS11. RPS11 protein appears as the green arrow, Tubulin serves as a control and appears in red arrow.








    RNA Targets
    • RPS11 protein binds to 18 RNA regions.  





    Proteins bound to RNA
    • RPS11 RNA is bound by 37 proteins.  






    RPS11 protein has 18 RNA targets:

    Only display 100 entries as example. Please click "View All" button to see all 18 entries.     

    RBP Chr Start End Strand log2(fold change) -log(p-value) Cell Line Matched Gene Matched Area
    RPS11chrX6889240168892414+3.4867548.20932K562EDAintron-Distal
    RPS11chrX6889237868892401+3.5285550.24792K562EDAintron-Distal
    RPS11chrX7128440371284429+6.7070211.45285K562NHSL2intron-Distal
    RPS11chr12226364722263714-5.566975.03004K562HSPG25'-UTR,CDS,intron-Distal
    RPS11chr139200061492000704+3.327828.91261K562MIR17HGintron-Distal
    RPS11chr62620506726205110+3.830245.34922K562HIST1H4ECDS
    RPS11chr5137368895137368917+5.985226.46411K562RP11-325L7.1intron-Distal
    RPS11chr221941901819419117-3.308045.11859K562HIRA, C22orf395'-UTR,intron-Distal
    RPS11chr25419788154197948-4.031775.21996K562PSME45'-UTR,CDS,intron-Distal,intron-Proximal
    RPS11chr194825918848259221+3.308044.54805K562GLTSCR2intron-Distal
    RPS11chr8141554174141554179-5.455775.06386K562AGO2intron-Distal
    RPS11chr62777816027778201+3.341363.90190K562HIST1H3HCDS
    RPS11chrX6889237068892378+3.7837656.28274K562EDAintron-Distal
    RPS11chr8141554179141554199-5.455775.06386K562AGO2intron-Distal
    RPS11chr57994761379947662-4.721035.17983K562DHFRintron-Distal
    RPS11chr23736005237360080-6.1772419.03931K562EIF2AK2intron-Distal
    RPS11chr753403865340390+5.1461814.52480K562SLC29A4intron-Proximal
    RPS11chr753403905340411+5.1461814.52480K562SLC29A4intron-Distal,intron-Proximal




    37 proteins are bound to RPS11 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr195000276850002777+3'-UTR,CDS,intron-Proximal4.08032400.00000K562PABPC4
    chr195000277850002788+3'-UTR,CDS3.5361020.68223K562IGF2BP1
    chr195000290950002913+3'-UTR4.0727748.05944K562YBX3
    chr195000276850002778+3'-UTR,CDS,intron-Proximal3.6466624.42793K562IGF2BP1
    chr195000284450002847+3'-UTR,CDS3.2971347.80704K562YBX3
    chr195000283150002844+3'-UTR,CDS3.1307057.90205K562YBX3
    chr195000276350002791+3'-UTR,CDS,intron-Proximal3.122836.37665HepG2AQR
    chr195000276850002777+3'-UTR,CDS,intron-Proximal3.8905128.88256HepG2IGF2BP1
    chr195000278950002798+3'-UTR,CDS4.6713228.71117HepG2IGF2BP3
    chr195000277750002818+3'-UTR,CDS3.5950630.97127HepG2IGF2BP1
    chr195000278750002825+3'-UTR,CDS3.5590452.63757HepG2LARP4
    chr195000277050002778+3'-UTR,CDS3.0886323.60274K562IGF2BP2
    chr195000129450001344+3'-UTR,5'-UTR,CDS,intron-Proximal4.2462828.82310HepG2PRPF8
    chr195000279850002825+3'-UTR,CDS4.3070621.12786HepG2IGF2BP3
    chr195000276850002775+3'-UTR,CDS,intron-Proximal4.41947400.00000K562PUM1
    chr195000277050002779+3'-UTR,CDS3.0113631.55787HepG2LARP4
    chr195000278950002833+3'-UTR,CDS3.3494569.39688K562PUM1
    chr195000287050002878+3'-UTR,CDS3.68790400.00000K562YBX3
    chr195000284850002899+3'-UTR,CDS3.1405132.30663K562METAP2
    chr195000279450002826+3'-UTR,CDS5.59591400.00000K562PABPC4
    chr195000277850002788+3'-UTR,CDS3.0916922.89140K562IGF2BP2
    chr195000277550002780+3'-UTR,CDS4.34516400.00000K562PUM1
    chr195000278050002789+3'-UTR,CDS4.0628284.91567K562PUM1
    chr195000276850002776+3'-UTR,CDS,intron-Proximal4.2785745.72732K562ZNF800
    chr195000276750002778+3'-UTR,CDS,intron-Proximal5.4014040.77496HepG2IGF2BP3
    chr195000289350002917+3'-UTR3.7062177.46339K562PABPC4
    chr195000285150002870+3'-UTR,CDS3.95347400.00000K562YBX3
    chr195000277950002787+3'-UTR,CDS3.0235831.37821HepG2LARP4
    chr195000276850002775+3'-UTR,CDS,intron-Proximal3.5622216.07301K562RPS3
    chr195000276850002770+3'-UTR,CDS,intron-Proximal3.1989823.56778K562IGF2BP2
    chr195000277650002821+3'-UTR,CDS3.6865948.28619K562ZNF800
    chr195000277850002794+3'-UTR,CDS5.10247400.00000K562PABPC4
    chr195000276850002816+3'-UTR,CDS,intron-Proximal3.8221544.79210HepG2ZNF800
    chr195000284750002851+3'-UTR,CDS3.91078400.00000K562YBX3
    chr195000277850002788+3'-UTR,CDS4.9765938.53594HepG2IGF2BP3
    chr195000289350002909+3'-UTR3.8246056.25022K562YBX3
    chr195000120450001221+5'-UTR,CDS3.6804984.47164K562ZNF800
    chr195000117350001186+5'-UTR,CDS,intron-Proximal3.6603027.46055HepG2ZNF800
    chr195000054350000560+5'-UTR,CDS,intron-Proximal3.45047400.00000K562YBX3
    chr194999972449999728+5'-UTR,CDS3.7322412.83797K562EIF3G
    chr194999969349999728+5'-UTR,CDS3.70929400.00000K562APOBEC3C
    chr195000054850000578+5'-UTR,CDS,intron-Proximal3.4498130.32208HepG2GRWD1
    chr195000045050000465+5'-UTR,CDS,intron-Proximal3.3714111.53813K562EIF3G
    chr195000054150000573+5'-UTR,CDS,intron-Proximal3.4793910.23966HepG2IGF2BP3
    chr195000052350000538+5'-UTR,CDS3.3310949.85322K562PABPC4
    chr195000083850000842+5'-UTR,CDS3.22034400.00000K562YBX3
    chr195000084450000849+5'-UTR,CDS3.4755529.97400HepG2IGF2BP1
    chr195000123650001242+5'-UTR,CDS3.36221400.00000K562YBX3
    chr195000126950001303+5'-UTR,CDS3.6352545.85940HepG2ZNF800
    chr195000129750001303+5'-UTR,CDS3.80448400.00000K562PABPC4
    chr195000078350000793+5'-UTR,CDS,intron-Proximal3.4860317.19507HepG2GRWD1
    chr195000119350001204+5'-UTR,CDS3.3239251.21479K562ZNF800
    chr195000054050000543+5'-UTR,CDS,intron-Proximal3.39658400.00000K562YBX3
    chr195000084250000847+5'-UTR,CDS3.32264400.00000K562YBX3
    chr195000118550001191+5'-UTR,CDS4.8940758.70095K562LIN28B
    chr195000055050000570+5'-UTR,CDS,intron-Proximal4.06134400.00000K562PABPC4
    chr195000115050001194+5'-UTR,CDS,intron-Proximal3.1509912.16580HepG2AQR
    chr195000084150000852+5'-UTR,CDS3.0344541.99371HepG2GRWD1
    chr195000117550001181+5'-UTR,CDS4.7042123.33319HepG2IGF2BP3
    chr195000077850000783+5'-UTR,CDS,intron-Proximal3.8781617.78283HepG2GRWD1
    chr195000045050000466+5'-UTR,CDS,intron-Proximal4.23250400.00000K562PABPC4
    chr195000081550000854+5'-UTR,CDS,intron-Proximal3.050987.71485HepG2AQR
    chr195000080850000822+5'-UTR,CDS,intron-Proximal3.3657726.97363HepG2GRWD1
    chr195000127750001293+5'-UTR,CDS5.0670830.10298HepG2IGF2BP3
    chr195000082350000846+5'-UTR,CDS,intron-Proximal4.7921425.07794HepG2IGF2BP3
    chr195000077650000778+5'-UTR,CDS,intron-Proximal3.2142761.48637K562YBX3
    chr195000125250001263+5'-UTR,CDS3.3279885.01520K562PUM1
    chr195000084450000852+5'-UTR,CDS3.7953826.72152HepG2ZNF800
    chr195000117550001185+5'-UTR,CDS3.4487329.97400HepG2IGF2BP1
    chr194999969449999724+5'-UTR,CDS3.8372913.92808K562EIF3G
    chr195000123850001252+5'-UTR,CDS3.01134400.00000K562PUM1
    chr195000084950000852+5'-UTR,CDS3.32918400.00000K562YBX3
    chr195000122550001269+5'-UTR,CDS3.2933545.20676HepG2ZNF800
    chr194999969449999728+5'-UTR,CDS3.6857347.78410HepG2LARP4
    chr195000056650000578+5'-UTR,CDS,intron-Proximal3.59513400.00000K562YBX3
    chr195000129550001303+5'-UTR,CDS3.2359124.38317K562IGF2BP2
    chr195000077950000795+5'-UTR,CDS,intron-Proximal3.1859136.15857K562ZNF800
    chr195000117350001188+5'-UTR,CDS,intron-Proximal3.048467.73537HepG2SDAD1
    chr195000118650001201+5'-UTR,CDS3.6101519.16402HepG2ZNF800
    chr195000082250000841+5'-UTR,CDS,intron-Proximal3.1037343.81239HepG2GRWD1
    chr195000052650000540+5'-UTR,CDS,intron-Proximal3.15542400.00000K562YBX3
    chr195000126350001300+5'-UTR,CDS3.82441400.00000K562PUM1
    chr195000083250000886+5'-UTR,CDS,intron-Proximal3.2242116.18006HepG2PRPF8
    chr195000127750001292+5'-UTR,CDS4.3158231.85106HepG2IGF2BP1
    chr195000127650001297+5'-UTR,CDS3.43679400.00000K562PABPC4
    chr195000117350001175+5'-UTR,CDS,intron-Proximal4.7042123.33319HepG2IGF2BP3
    chr195000045050000464+5'-UTR,CDS,intron-Proximal3.5941386.00959K562APOBEC3C
    chr195000051950000548+5'-UTR,CDS,intron-Proximal3.2236925.07292HepG2GRWD1
    chr195000118650001216+5'-UTR,CDS3.17327400.00000K562YBX3
    chr195000084950000852+5'-UTR,CDS3.0089327.32727K562IGF2BP1
    chr195000122150001253+5'-UTR,CDS3.57872400.00000K562ZNF800
    chr195000056050000566+5'-UTR,CDS,intron-Proximal3.47130400.00000K562YBX3
    chr194999969449999728+5'-UTR,CDS5.03076400.00000K562PABPC4
    chr195000123850001267+5'-UTR,CDS3.3388716.43126HepG2LIN28B
    chr195000082350000852+5'-UTR,CDS,intron-Proximal3.61579400.00000K562PABPC4
    chr195000118650001214+5'-UTR,CDS4.76208400.00000HepG2LIN28B
    chr195000084950000852+5'-UTR,CDS3.4595829.97400HepG2IGF2BP1
    chr195000117350001175+5'-UTR,CDS,intron-Proximal3.4395729.97400HepG2IGF2BP1
    chr195000057850000582+5'-UTR,CDS,intron-Proximal3.90361400.00000K562YBX3
    chr195000130050001303+5'-UTR,CDS4.16017400.00000K562PUM1
    chr195000077650000779+5'-UTR,CDS,intron-Proximal3.0474027.77593K562ZNF800
    chr195000082350000844+5'-UTR,CDS,intron-Proximal3.5878731.31787HepG2IGF2BP1
    chr195000129350001303+5'-UTR,CDS3.5954925.51348K562IGF2BP1
    chr195000129650001303+5'-UTR,CDS3.9473130.28562HepG2IGF2BP1
    chr195000129350001303+5'-UTR,CDS5.3462438.59213HepG2IGF2BP3
    chr195000077850000794+5'-UTR,CDS,intron-Proximal3.1102784.94947K562YBX3
    chr195000118150001185+5'-UTR,CDS4.6217019.65878HepG2IGF2BP3
    chr195000057850000582+5'-UTR,CDS,intron-Proximal4.1410421.16398HepG2GRWD1
    chr195000127150001299+5'-UTR,CDS3.5374364.66444K562ZNF800
    chr195000079450000835+5'-UTR,CDS,intron-Proximal3.25670400.00000K562YBX3
    chr195000081050000844+5'-UTR,CDS,intron-Proximal3.7481931.49853HepG2ZNF800
    chr195000117350001178+5'-UTR,CDS,intron-Proximal3.22419400.00000K562YBX3
    chr195000129950001303+5'-UTR,CDS3.9028338.25201K562ZNF800
    chr195000117550001185+5'-UTR,CDS3.1106331.20460K562LIN28B
    chr195000117350001185+5'-UTR,CDS,intron-Proximal3.58651400.00000K562PABPC4
    chr195000126050001266+5'-UTR,CDS3.26933400.00000K562YBX3
    chr195000084650000852+5'-UTR,CDS5.0614636.15794HepG2IGF2BP3
    chr195000119150001215+5'-UTR,CDS5.99809400.00000K562LIN28B
    chr195000123250001253+5'-UTR,CDS3.6733515.82614HepG2IGF2BP1
    chr195000121650001227+5'-UTR,CDS3.36180400.00000K562YBX3
    chr195000122750001236+5'-UTR,CDS3.42512400.00000K562YBX3
    chr195000080350000849+5'-UTR,CDS,intron-Proximal3.1178132.00169K562IGF2BP1
    chr195000045050000454+5'-UTR,CDS,intron-Proximal3.1993526.68271HepG2LARP4
    chr195000121450001238+5'-UTR,CDS5.34557400.00000HepG2LIN28B
    chr195000125350001277+5'-UTR,CDS3.6322113.13014HepG2IGF2BP1
    chr195000125350001271+5'-UTR,CDS3.5260756.83836K562ZNF800
    chr195000121850001258+5'-UTR,CDS5.01055400.00000K562LIN28B
    chr194999972949999768+CDS,intron-Proximal6.3395516.13178K562AQR
    chr194999974349999761+CDS,intron-Proximal5.027295.32906HepG2AQR
    chr195000104250001049+intron-Distal3.83168400.00000K562LARP7
    chr195000104050001059+intron-Distal4.77940400.00000K562SMNDC1
    chr195000098750001055+intron-Distal3.85439400.00000K562PHF6
    chr195000103550001040+intron-Distal4.53280400.00000K562SMNDC1
    chr195000101850001023+intron-Distal4.10296400.00000K562SF3B4
    chr195000099050001019+intron-Distal4.1239069.16798HepG2NIP7
    chr195000072450000762+intron-Distal,intron-Proximal5.2366733.12386K562SF3B4
    chr195000104150001045+intron-Distal5.80926400.00000K562AATF
    chr195000097650000978+intron-Distal4.0016847.32029K562LARP7
    chr195000103650001045+intron-Distal3.58169400.00000K562PTBP1
    chr195000070950000720+intron-Distal,intron-Proximal3.128263.10102HepG2SF3B4
    chr195000101950001034+intron-Distal3.3491232.69936HepG2NIP7
    chr195000103550001059+intron-Distal4.70360400.00000HepG2DKC1
    chr195000097750001059+intron-Distal4.6221341.85830K562ZC3H8
    chr195000103550001039+intron-Distal5.53071400.00000HepG2NOLC1
    chr195000104150001049+intron-Distal4.34949400.00000K562SF3B4
    chr195000100650001046+intron-Distal3.1878661.52632K562XRCC6
    chr195000236050002454+intron-Distal3.775686.93263K562GTF2F1
    chr195000073250000775+intron-Distal,intron-Proximal6.4222517.52554HepG2SF3B4
    chr195000098750001051+intron-Distal3.00105400.00000HepG2LARP7
    chr195000098150001017+intron-Distal4.69243400.00000HepG2DKC1
    chr195000101850001023+intron-Distal4.25236400.00000K562SMNDC1
    chr195000233350002418+intron-Distal3.212633.04847HepG2CSTF2T
    chr195000099050001008+intron-Distal5.96116400.00000K562AATF
    chr195000104850001053+intron-Distal4.63230400.00000HepG2NOLC1
    chr195000105150001059+intron-Distal3.6876220.76361HepG2SMNDC1
    chr195000102350001041+intron-Distal4.17079400.00000K562SF3B4
    chr195000099950001017+intron-Distal4.02329400.00000K562SMNDC1
    chr195000103250001036+intron-Distal3.59444400.00000K562PTBP1
    chr195000102350001035+intron-Distal4.61525400.00000K562SMNDC1
    chr195000098850001051+intron-Distal3.4514729.30175K562UTP18
    chr195000101650001032+intron-Distal3.24928400.00000K562PTBP1
    chr195000105350001059+intron-Distal5.93514400.00000HepG2NOLC1
    chr195000105350001059+intron-Distal4.3772641.33756K562PTBP1
    chr195000100950001015+intron-Distal5.81829400.00000K562AATF
    chr195000098650001052+intron-Distal3.4370539.67888K562SDAD1
    chr195000105150001060+intron-Distal4.0549347.97277HepG2LARP7
    chr195000101550001041+intron-Distal5.68438400.00000K562AATF
    chr195000099150001051+intron-Distal6.3029347.18879K562NIPBL
    chr195000099050001018+intron-Distal4.04119400.00000K562SF3B4
    chr195000098350001035+intron-Distal5.01927400.00000HepG2NOLC1
    chr195000097850000985+intron-Distal4.0368850.55879K562LARP7
    chr195000234750002405+intron-Distal5.054897.66822HepG2PRPF4
    chr195000071450000744+intron-Distal,intron-Proximal4.368014.94135HepG2RBM5
    chr195000103650001046+intron-Distal3.0529860.63996K562ZRANB2
    chr195000072250000732+intron-Distal,intron-Proximal5.2794716.91373HepG2SF3B4
    chr195000101850001035+intron-Distal4.61159400.00000HepG2DKC1
    chr195000100250001042+intron-Distal3.59086400.00000K562LARP7
    chr195000104950001059+intron-Distal4.13515400.00000K562SF3B4
    chr195000100950001016+intron-Distal3.06969400.00000K562PTBP1
    chr195000097750000983+intron-Distal4.67933400.00000HepG2NOLC1
    chr195000035450000406+intron-Proximal4.1661212.08156HepG2RBFOX2
    chr195000038850000425+intron-Proximal4.985995.68078HepG2AQR
    chr195000271550002751+intron-Proximal3.526944.55636HepG2PRPF4
    chr195000036450000407+intron-Proximal3.268635.37254HepG2SF3B4
    chr195000272550002762+intron-Proximal3.8680512.99900HepG2SF3B4
    chr195000271650002725+intron-Proximal4.0034814.01581HepG2SF3B4
    chr195000091450000941+intron-Proximal6.2818413.61356HepG2EFTUD2
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    No autoregularoty interactions between protein RPS11 and its RNA.



    Diffrential Expression

    • The Knockdown/knockout assay for RPS11 is not available on ENCORE database.

    • 133 RBPs can affect the levels of RPS11.  








    The Knockdown/knockout RNA-Seq assay for RPS11 is not available on ENCORE database.





    133 RBPs can affect the gene expression of RPS11 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    RPS11ENSG00000142534.215968.1736011860.803400.428904.838003.56880HepG2ADAR
    RPS11ENSG00000142534.219636.0526033868.77070-0.7865011.0281010.03470HepG2AKAP1
    RPS11ENSG00000142534.215989.5216021047.02950-0.396503.402102.25720HepG2AKAP8
    RPS11ENSG00000142534.211391.6798014000.68240-0.297502.191101.49940HepG2AKAP8L
    RPS11ENSG00000142534.222332.0888028023.35260-0.327502.818102.02740HepG2ASCC1
    RPS11ENSG00000142534.218676.4943022013.62390-0.237204.216703.40110HepG2AUH
    RPS11ENSG00000142534.28143.8701010588.05430-0.378703.336302.35070HepG2BCLAF1
    RPS11ENSG00000142534.213827.4263017247.35590-0.318803.739202.31610HepG2BUD13
    RPS11ENSG00000142534.215912.7651018236.66400-0.196702.061601.38950HepG2CALR
    RPS11ENSG00000142534.27117.9209016503.84740-1.2133015.0384013.32100HepG2CNOT7
    RPS11ENSG00000142534.219888.5827012899.416300.6245010.237908.99730HepG2CPSF6
    RPS11ENSG00000142534.216113.0989012163.293500.405602.517001.54940HepG2YBX3
    RPS11ENSG00000142534.29681.7043015327.51720-0.6628012.9739011.63890HepG2DDX21
    RPS11ENSG00000142534.214056.5840032443.26590-1.2067028.7591026.97590HepG2DDX3X
    RPS11ENSG00000142534.210232.7482012982.85890-0.343404.530702.84290HepG2DDX52
    RPS11ENSG00000142534.28794.6668011981.46310-0.446104.314003.37120HepG2DDX55
    RPS11ENSG00000142534.221070.9688027870.50610-0.403503.430002.75040HepG2DDX6
    RPS11ENSG00000142534.28441.1944011942.92610-0.500607.218706.12640HepG2DNAJC21
    RPS11ENSG00000142534.210212.8755011838.21720-0.213104.582103.77900HepG2DNAJC2
    RPS11ENSG00000142534.210202.2774015489.67320-0.602408.986607.44060HepG2EEF2
    RPS11ENSG00000142534.29338.6969012912.50570-0.467505.532903.95800HepG2EFTUD2
    RPS11ENSG00000142534.214353.8092026791.53220-0.9003016.9539015.57420HepG2EIF2S1
    RPS11ENSG00000142534.216220.8283029607.27880-0.8681013.2021011.83070HepG2EIF4A3
    RPS11ENSG00000142534.222662.3833028827.82130-0.347202.103101.49950HepG2EIF4B
    RPS11ENSG00000142534.227501.7720021583.436000.349508.440507.12680HepG2EIF4G1
    RPS11ENSG00000142534.227490.5964020675.028000.410904.395203.38340HepG2EIF4G2
    RPS11ENSG00000142534.216307.1586025274.41790-0.6322027.6986026.12900HepG2ETF1
    RPS11ENSG00000142534.210934.4196013616.98020-0.316502.439501.65590HepG2EWSR1
    RPS11ENSG00000142534.218552.0323023245.56930-0.325402.493101.75840HepG2FIP1L1
    RPS11ENSG00000142534.27775.399709972.47260-0.359003.591502.15310HepG2FKBP4
    RPS11ENSG00000142534.210984.3051029874.05750-1.4434042.3165040.03070HepG2FXR1
    RPS11ENSG00000142534.215073.9269027711.75130-0.8784014.6053013.13560HepG2G3BP1
    RPS11ENSG00000142534.219395.4715029420.64480-0.601108.610807.02600HepG2G3BP2
    RPS11ENSG00000142534.29710.3957013767.53550-0.503706.220604.67080HepG2GNB2L1
    RPS11ENSG00000142534.29058.5813014621.26000-0.690707.379306.36390HepG2GPKOW
    RPS11ENSG00000142534.27568.7576012057.35090-0.6718013.8184012.54840HepG2HNRNPA1
    RPS11ENSG00000142534.210096.1285013411.82300-0.409705.452604.50630HepG2HNRNPC
    RPS11ENSG00000142534.224942.9437019924.960900.324006.708305.70290HepG2HNRNPL
    RPS11ENSG00000142534.213279.3949028168.09880-1.0849024.5259022.76760HepG2IGF2BP2
    RPS11ENSG00000142534.214419.0724026435.71630-0.874503.759302.61040HepG2IGF2BP3
    RPS11ENSG00000142534.217141.4315013609.097400.3328012.3461010.91980HepG2ILF2
    RPS11ENSG00000142534.219590.8304024590.39500-0.327902.099001.38360HepG2LARP4
    RPS11ENSG00000142534.211571.3534014161.59980-0.291403.159901.86020HepG2LIN28B
    RPS11ENSG00000142534.211328.3861029884.49400-1.3995037.7796035.60250HepG2MAGOH
    RPS11ENSG00000142534.212135.0654030051.50120-1.3083029.7440027.85550HepG2MATR3
    RPS11ENSG00000142534.215452.9237018812.81680-0.283803.289802.41150HepG2MSI2
    RPS11ENSG00000142534.218922.5880015797.342400.260302.511901.35650HepG2NAA15
    RPS11ENSG00000142534.210255.1153030759.17680-1.5847045.8856043.57460HepG2NCBP2
    RPS11ENSG00000142534.214528.9062027392.10870-0.9148016.7783015.05460HepG2PABPC4
    RPS11ENSG00000142534.216423.7419030713.12620-0.9031056.1939054.11150HepG2PCBP1
    RPS11ENSG00000142534.210182.4917016782.76960-0.720906.366104.84590HepG2PCBP2
    RPS11ENSG00000142534.213914.8079011883.127100.227603.101402.32480HepG2PPIL4
    RPS11ENSG00000142534.221774.7444017102.499400.348308.438907.18970HepG2PRPF4
    RPS11ENSG00000142534.212351.2441017642.31050-0.514403.454002.10350HepG2PRPF6
    RPS11ENSG00000142534.26486.340109241.38740-0.510706.198105.04050HepG2PRPF8
    RPS11ENSG00000142534.28982.3107031251.70320-1.79880200.40410197.42050HepG2PTBP1
    RPS11ENSG00000142534.212752.4547020706.77850-0.6993013.1967012.02420HepG2PUF60
    RPS11ENSG00000142534.217809.7356021982.25520-0.303703.812903.14030HepG2PUM1
    RPS11ENSG00000142534.217587.1052021965.51750-0.320703.268502.53980HepG2PUM2
    RPS11ENSG00000142534.26869.2843014195.77650-1.0472013.1395011.96980HepG2PUS1
    RPS11ENSG00000142534.213280.9171033846.47520-1.3497081.2359078.71400HepG2QKI
    RPS11ENSG00000142534.214837.1878030717.81060-1.0499036.8512034.62770HepG2RBM25
    RPS11ENSG00000142534.213546.1299034780.18770-1.3604099.2338097.19140HepG2NELFE
    RPS11ENSG00000142534.216316.5311032392.94100-0.9893070.4888068.27680HepG2RECQL
    RPS11ENSG00000142534.213483.9495017487.61650-0.375104.532003.68650HepG2RPLP0
    RPS11ENSG00000142534.211221.2503015910.62840-0.503803.303202.27100HepG2RPS10
    RPS11ENSG00000142534.27059.6695012235.26340-0.7934020.6188019.18140HepG2RPS19
    RPS11ENSG00000142534.27782.9717015002.34530-0.9468021.6114019.56170HepG2RPS2
    RPS11ENSG00000142534.27800.6255016579.50660-1.0877015.6805013.83280HepG2RPS3A
    RPS11ENSG00000142534.210404.3959015314.87700-0.557707.880406.07680HepG2RPS5
    RPS11ENSG00000142534.27004.622209141.51310-0.384103.363402.50750HepG2RRP9
    RPS11ENSG00000142534.212616.8708017622.40250-0.482103.018401.42380HepG2RTF1
    RPS11ENSG00000142534.218219.3614011864.692700.618705.231804.39630HepG2SAFB2
    RPS11ENSG00000142534.29840.0415012279.49370-0.319502.906801.94240HepG2SERBP1
    RPS11ENSG00000142534.215445.0382032537.14860-1.0749081.9524079.61490HepG2SF3B4
    RPS11ENSG00000142534.211747.8731013835.98890-0.236004.906304.08960HepG2SMN1
    RPS11ENSG00000142534.27845.3301015366.79880-0.969903.727702.81550HepG2SNRNP70
    RPS11ENSG00000142534.219883.6317023859.71400-0.263006.383505.70770HepG2SRFBP1
    RPS11ENSG00000142534.210780.2681033961.70140-1.65550215.75730213.34390HepG2SRSF1
    RPS11ENSG00000142534.213678.4557020446.24050-0.579908.816307.78180HepG2SRSF5
    RPS11ENSG00000142534.213056.1916015949.61790-0.288805.986105.02520HepG2SRSF7
    RPS11ENSG00000142534.215598.6779027629.62080-0.8248043.2691041.60430HepG2SRSF9
    RPS11ENSG00000142534.214334.7973020715.98890-0.5312021.3876020.25580HepG2SSB
    RPS11ENSG00000142534.210887.7115015134.18650-0.475103.257601.94870HepG2SUB1
    RPS11ENSG00000142534.215891.9632023251.88430-0.549109.881808.82840HepG2SUCLG1
    RPS11ENSG00000142534.28896.3276011926.97230-0.422904.068303.27220HepG2SUPV3L1
    RPS11ENSG00000142534.220004.9248030525.99760-0.6097019.8061018.50080HepG2TAF15
    RPS11ENSG00000142534.216531.8578013603.563400.281202.545101.84550HepG2TARDBP
    RPS11ENSG00000142534.218003.3471028049.34340-0.6397015.3284013.39990HepG2TIA1
    RPS11ENSG00000142534.27076.8039012944.97820-0.8712013.2674012.31150HepG2TIAL1
    RPS11ENSG00000142534.215797.0289013061.701300.274202.440801.90430HepG2TRIM56
    RPS11ENSG00000142534.211367.2943020231.43490-0.8317020.4845017.96670HepG2TUFM
    RPS11ENSG00000142534.215387.3859019884.71670-0.369904.214803.44780HepG2U2AF1
    RPS11ENSG00000142534.216495.1548021415.83170-0.376603.243702.33870HepG2UBE2L3
    RPS11ENSG00000142534.29780.732707045.363400.473204.940603.92040HepG2UCHL5
    RPS11ENSG00000142534.214578.2348018116.06550-0.313506.448004.91820HepG2UTP18
    RPS11ENSG00000142534.211763.8148015927.42460-0.437203.082701.74520HepG2XRCC5
    RPS11ENSG00000142534.211762.4818017810.83820-0.598604.885103.50020HepG2XRCC6
    RPS11ENSG00000142534.215580.8313011740.808000.408103.971403.11030HepG2XRN2
    RPS11ENSG00000142534.213750.9529016877.63590-0.295608.776107.69270HepG2ZC3H8
    RPS11ENSG00000142534.216076.6276019384.02680-0.269908.606107.77840HepG2ZNF622
    RPS11ENSG00000142534.212117.8709016182.29500-0.417302.843201.52950HepG2ZRANB2
    RPS11ENSG00000142534.223634.3997031744.24420-0.425606.236504.39790K562AARS
    RPS11ENSG00000142534.261373.1775041151.734500.5766026.5058024.86010K562AGGF1
    RPS11ENSG00000142534.261266.7616045221.113600.438006.324204.68650K562AKAP8
    RPS11ENSG00000142534.270319.9534042820.633200.7155015.6183013.84760K562AKAP8L
    RPS11ENSG00000142534.254282.5479037290.385700.541608.915807.95960K562AQR
    RPS11ENSG00000142534.260611.1287044929.885800.431809.802207.95280K562ATP5C1
    RPS11ENSG00000142534.241521.2695033188.842100.323102.074201.32460K562BOP1
    RPS11ENSG00000142534.224051.3896020357.368300.240502.452001.47390K562DDX3X
    RPS11ENSG00000142534.231002.5320046166.57770-0.574507.905106.88060K562DDX47
    RPS11ENSG00000142534.229213.0007023064.572400.340802.918101.54990K562DHX30
    RPS11ENSG00000142534.262953.9563046075.634200.4502012.1357010.03040K562DKC1
    RPS11ENSG00000142534.224779.1319019153.905500.371406.824404.88410K562EIF4B
    RPS11ENSG00000142534.224541.7145018565.601600.402507.990305.54700K562EWSR1
    RPS11ENSG00000142534.253386.1769039083.709500.449806.071604.78310K562FIP1L1
    RPS11ENSG00000142534.226097.2639020065.074600.379106.671603.74320K562FUBP3
    RPS11ENSG00000142534.214483.1086022118.61630-0.6109021.0032019.44820K562FXR1
    RPS11ENSG00000142534.231117.3223023875.288900.382103.361101.74780K562G3BP1
    RPS11ENSG00000142534.214478.2320022851.14740-0.658403.407202.60680K562G3BP2
    RPS11ENSG00000142534.250060.3740037876.265500.402305.936804.82630K562GRSF1
    RPS11ENSG00000142534.272215.8415046526.906700.634203.021501.73050K562HNRNPA2B1
    RPS11ENSG00000142534.224745.9077034738.60450-0.489308.827707.81190K562HNRNPC
    RPS11ENSG00000142534.242860.8703032146.305300.414903.895402.77860K562HNRNPM
    RPS11ENSG00000142534.232389.0969038616.01710-0.253703.662802.63480K562HNRNPU
    RPS11ENSG00000142534.267801.0649052990.059300.355503.900502.95970K562HSPD1
    RPS11ENSG00000142534.266770.3068045442.033600.5551011.436709.40830K562KIF1C
    RPS11ENSG00000142534.259529.8061043500.311600.452506.442904.52290K562MAK16
    RPS11ENSG00000142534.259394.0585035682.061600.735008.708106.79770K562NAA15
    RPS11ENSG00000142534.268723.0573040700.722600.755604.251802.95640K562PABPN1
    RPS11ENSG00000142534.228553.8254041421.70790-0.536706.519605.24100K562PCBP3
    RPS11ENSG00000142534.220662.4266031772.07380-0.6207015.1993013.39270K562POLR2G
    RPS11ENSG00000142534.257323.0961044366.870400.369502.459901.68970K562PPIG
    RPS11ENSG00000142534.216425.5136025499.34310-0.634504.459703.63690K562PTBP1
    RPS11ENSG00000142534.246565.4268057284.36730-0.298903.552502.63050K562PUF60
    RPS11ENSG00000142534.275080.2776042463.545700.822107.695406.83680K562PUS1
    RPS11ENSG00000142534.270366.7991041376.626000.7660017.8360016.30670K562RBM15
    RPS11ENSG00000142534.232783.4655021661.659700.597705.317203.38380K562RBM25
    RPS11ENSG00000142534.219466.8805025722.67900-0.402002.478001.45230K562NELFE
    RPS11ENSG00000142534.228422.8848023185.871800.293703.114901.31130K562RECQL
    RPS11ENSG00000142534.213889.0704021609.02600-0.637707.943906.54540K562RPS19
    RPS11ENSG00000142534.220070.1110037369.77590-0.8968019.8174017.02660K562RPS3
    RPS11ENSG00000142534.230761.8001021690.525500.504004.162402.52560K562RRP9
    RPS11ENSG00000142534.220699.8400028309.02130-0.451607.159305.43120K562SAFB
    RPS11ENSG00000142534.250611.1733040656.886900.315906.228605.04230K562SF3A3
    RPS11ENSG00000142534.268969.9711042746.350000.690103.273501.89410K562SNRNP200
    RPS11ENSG00000142534.233510.9375041653.53130-0.313806.132704.80410K562SRPK2
    RPS11ENSG00000142534.230871.2404036073.75860-0.224702.363501.40200K562SRSF4
    RPS11ENSG00000142534.221157.9622017973.159500.235303.543902.06370K562SSB
    RPS11ENSG00000142534.227705.4622031867.92570-0.201902.135301.41230K562SYNCRIP
    RPS11ENSG00000142534.224084.9950018723.778800.363203.073501.30780K562TFIP11
    RPS11ENSG00000142534.229122.9465022136.605900.395603.380702.14610K562U2AF1
    RPS11ENSG00000142534.280878.1747064590.549300.324304.211302.48070K562UBE2L3
    RPS11ENSG00000142534.232488.5835038875.26860-0.258903.217702.31160K562WDR43
    RPS11ENSG00000142534.249394.0790042004.402900.233702.141301.39230K562ZC3H8
    RPS11ENSG00000142534.227942.5064033885.74920-0.278203.357301.31820K562ZNF800
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for RPS11 is not available on ENCORE database.





    14 RBPs can affect the splicing of RPS11 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SERPS11ENSG00000142534.2chr19+5000042950000625499996904999972850000776500008190.182000.000100.01670includedK562FMR1
    SERPS11ENSG00000142534.2chr19+5000042950000656499996904999972850000776500008520.156000.005250.04840includedK562AQR
    SERPS11ENSG00000142534.2chr19+500004505000052049999626499997285000077650000852-0.240000.000000.00000excludedK562AQR
    SERPS11ENSG00000142534.2chr19+5000042950000625499996904999972850000776500008190.189000.000090.00218includedK562PUS1
    SERPS11ENSG00000142534.2chr19+5000042950000625499996904999972850000776500008520.311000.000820.03934includedHepG2SFPQ
    SERPS11ENSG00000142534.2chr19+5000042950000625499996904999972850000776500008190.283000.001170.09981includedHepG2RBFOX2
    SERPS11ENSG00000142534.2chr19+5000042950000625499996904999972850000776500008520.236000.000030.01062includedK562UPF1
    SERPS11ENSG00000142534.2chr19+4999989250000011499996924999972850000776500008520.353000.000240.01228includedK562TARDBP
    SERPS11ENSG00000142534.2chr19+500004505000052049999621499997285000077650000852-0.257000.000000.00007excludedK562HNRNPC
    A3SSRPS11ENSG00000142534.2chr19+5000269850002946500027785000294650001173500013030.432000.000010.00011longerK562AQR
    A5SSRPS11ENSG00000142534.2chr19+499998925000006449999892500000115000045050000852-0.283000.000160.01896shorterK562RBM15
    A5SSRPS11ENSG00000142534.2chr19+500004505000066450000450500006295000077650000852-0.405000.000100.07814shorterK562DDX55
    RIRPS11ENSG00000142534.2chr19+500004505000085250000450500006295000077650000852-0.121000.000650.09706excludedK562LARP7
    RIRPS11ENSG00000142534.2chr19+5000045050000852500004505000062550000776500008520.109000.001110.01992includedK562FXR1
    MXERPS11ENSG00000142534.2chr19+4999989250000011500000985000027249999692499997285000045050000852-0.235000.007080.047872includedK562AQR
    MXERPS11ENSG00000142534.2chr19+4999989250000064500000985000027249999692499997285000045050000852-0.412000.001760.014922includedK562AQR
    MXERPS11ENSG00000142534.2chr19+5000045050000852500011735000130349999687499997285000276850002946-0.067000.000720.034962includedK562IGF2BP2
    MXERPS11ENSG00000142534.2chr19+50000450500008525000117350001303499996874999972850002768500029460.132000.000000.000001includedK562SERBP1

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for RPS11 is not avaliable on ENCORE database.