RTF1

General Information

Gene Name       : RTF1
Gene ID             : ENSG00000137815.14
Essential Gene : Yes

Functions

Localization(RBPImage: RTF1)

Domains (AlphaFold: RTF1)


Antibody Validation

 View validation images for all RTF1 antibodies

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RTF1ENSG00000137815.1432.7333.4333.08ENCSR000AEF
HepG2RTF1ENSG00000137815.1416.0228.1122.06ENCSR985KAT
K562RTF1ENSG00000137815.1429.1730.5629.87ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq RTF1-BGKLV13-K562ENCSR783YSQRTF1K562ReleasedENCSR815CVQ   shRNAKD% = 58.0,63.4
knockdown followed by RNA-seq RTF1-BGHLV14-HepG2ENCSR906WTMRTF1HepG2ReleasedENCSR491FOC   shRNAKD% = 72.0,69.4






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
RTF1ENCAB664NPTA300-178A1Released, ENCODE3BGHLV14-45, Released, ENCODE3BGKLV13-19, Released, ENCODE3
RTF1ENCAB195QAYA301-329A1Released, ENCODE4BGHLV14-45, Released, ENCODE4
RTF1ENCAB525EGKA300-179A1Released, ENCODE4BGHLV14-45, Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
RTF1K562shRNAENCSR783YSQENCSR815CVQRTF1_BGKLV13_19,RTF1_BGKLV13_20NT_BGKLV13_1,NT_BGKLV13_258.0,63.4ReleasedENCODE3
RTF1HepG2shRNAENCSR906WTMENCSR491FOCRTF1_BGHLV14-45,RTF1_BGHLV14-46NT_BGHLV14-1,NT_BGHLV14-272.0,69.4ReleasedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    RTF1: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Mitochondria
  • Cytosolic












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    RTF1Product_ID: A300-178A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: RTF1-human    		 RTF1-hepg2.png<br>Caption: Western blot following shRNA against RTF1 in HepG2 whole cell lysate using RTF1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against RTF1. RTF1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    		 K562_Bethyl_A300-178A_1_RTF1.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using RTF1 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-RTF1 antibody (lanes under 'RTF1').
    		 RTF1-K562.png<br>Caption: Western blot following shRNA against RTF1 in K562 whole cell lysate using RTF1 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against RTF1. RTF1 protein appears as the green arrow, GAPDH serves as a control and appears in red arrow.
    RTF1Product_ID: A300-179A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: RTF1-human    		 RTF1-HEPG2-A300-179A.png<br>Caption: Western blot following shRNA against RTF1 in HepG2 whole cell lysate using RTF1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNA against RTF1. RTF1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
    		 Bethyl_A300-179A_1_RTF1.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the RTF1 specific antibody, A300-179A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the RTF1-specific antibody, A300-179A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.
    RTF1Product_ID: A301-329A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: RTF1-human    		 RTF1-HEPG2-A301-329A.png<br>Caption: Western blot following shRNA against RTF1 in HepG2 whole cell lysate using RTF1 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different shRNA against RTF1. RTF1 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
    		 Bethyl_A301-329A_1_RTF1.png<br>Caption: IP-WB analysis of K562 whole cell lysate using the RTF1 specific antibody, A301-329A. Lanes 1 and 2 are 2.5% of five million whole cell lysate input and 50% of IP enrichment, respectively, using a normal IgG antibody. Lane 3 is 50% of IP enrichment from five million whole cell lysate using the RTF1-specific antibody, A301-329A. The same antibody was used to detect protein levels via Western blot. This antibody passes preliminary validation and will be further pursued for secondary validation. *NOTE* Protein sizes are taken from Genecards.org and are only estimates based on sequence. Actual protein size may differ based on protein characteristics and electrophoresis method used.








    RNA Targets

    • eCLIP assay for RTF1 is not avaliable on ENCORE database.



    Proteins bound to RNA
    • RTF1 RNA is bound by 29 proteins.  







    eCLIP assay for RTF1 is not avaliable on ENCORE database.





    29 proteins are bound to RTF1 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr154177451341774566+3'-UTR5.217875.48218K562FAM120A
    chr154177295641773003+3'-UTR3.871864.40383K562UCHL5
    chr154177346641773535+3'-UTR4.7930119.69932K562TARDBP
    chr154177303341773098+3'-UTR4.2524730.51839K562PUM2
    chr154177354141773567+3'-UTR3.779246.27203K562DDX6
    chr154177504941775137+3'-UTR4.060966.14589K562IGF2BP1
    chr154177439441774467+3'-UTR3.953665.27598K562TARDBP
    chr154177416641774188+3'-UTR3.608424.78882K562IGF2BP2
    chr154177352441773584+3'-UTR4.055437.65541K562TIA1
    chr154177347441773572+3'-UTR3.6046910.38257K562UPF1
    chr154177374941773791+3'-UTR4.9293019.68956K562FAM120A
    chr154177430241774376+3'-UTR4.040197.30349K562TARDBP
    chr154177474741774796+3'-UTR3.913366.12308K562PUM2
    chr154177418841774212+3'-UTR4.625835.30214K562IGF2BP2
    chr154177297841773033+3'-UTR4.4712424.45463K562PUM2
    chr154177358541773615+3'-UTR3.617053.88742K562FAM120A
    chr154177351741773541+3'-UTR3.502626.30386K562DDX6
    chr154177352841773565+3'-UTR3.324577.57209K562FAM120A
    chr154177442841774494+3'-UTR3.9795811.93954K562PUM2
    chr154177289741772996+3'-UTR3.432154.03740HepG2PCBP2
    chr154177367141773749+3'-UTR3.9220511.58727K562FAM120A
    chr154177358441773631+3'-UTR3.124703.14650K562TIA1
    chr154176682941766900+CDS3.005334.01873K562UCHL5
    chr154176790441767938+CDS,intron-Proximal3.127683.39477K562BUD13
    chr154175696841757021+CDS,intron-Proximal5.119917.69747K562ZNF622
    chr154176245441762545+CDS,intron-Proximal3.1712411.56581K562PUM1
    chr154174511141745242+CDS3.741309.50935HepG2BCLAF1
    chr154174512641745201+CDS3.9682112.29278K562ZNF622
    chr154174993141749994+CDS3.704304.76554HepG2BCLAF1
    chr154170938241709447+CDS,intron-Distal3.768076.12756HepG2NCBP2
    chr154176966041769706+CDS3.646147.05173K562ZNF622
    chr154170932741709382+CDS,intron-Distal3.329383.28035HepG2NCBP2
    chr154170938341709509+CDS,intron-Distal4.4423918.75473K562UCHL5
    chr154174520141745246+CDS3.7203610.17809K562ZNF622
    chr154175697641757035+CDS4.102545.65086HepG2BCLAF1
    chr154177079241770812+CDS3.512843.66187K562ZNF622
    chr154177081741770882+CDS,intron-Proximal4.347433.85435K562PRPF8
    chr154174986941749906+CDS,intron-Proximal4.150978.25579K562ZNF800
    chr154176336641763403+CDS,intron-Proximal3.227337.84297K562ZNF800
    chr154170934041709447+CDS,intron-Distal3.6502312.26691K562ZNF622
    chr154175833941758378+CDS3.428544.99629K562PUM1
    chr154176688041766948+CDS,intron-Proximal5.049856.22530K562AQR
    chr154175696841757051+CDS,intron-Proximal4.312383.29312HepG2FXR2
    chr154174520841745247+CDS,intron-Proximal5.7783214.01812K562UCHL5
    chr154175704641757084+CDS,intron-Proximal3.186516.56233K562PUM1
    chr154176341341763506+CDS3.671314.51666K562RBM15
    chr154177130041771356+CDS,intron-Proximal3.255664.08171K562YBX3
    chr154177130041771346+CDS,intron-Proximal4.196784.01763HepG2GRWD1
    chr154176336941763467+CDS,intron-Proximal3.308186.33024HepG2BCLAF1
    chr154176935841769428+CDS,intron-Proximal3.838265.59977HepG2AQR
    chr154176251941762590+CDS3.709909.75908K562ZNF622
    chr154174512741745208+CDS4.3437012.69640K562UCHL5
    chr154174513141745219+CDS3.597814.45064HepG2GRWD1
    chr154174986941749916+CDS,intron-Proximal3.056363.69997K562GRWD1
    chr154176336941763392+CDS,intron-Proximal3.207595.28705K562PUM1
    chr154174987241749931+CDS4.844365.70640HepG2BCLAF1
    chr154176939941769463+CDS4.195383.89395K562GRWD1
    chr154175697841757084+CDS,intron-Proximal4.6469822.89335K562UCHL5
    chr154175698541757082+CDS3.529647.93146K562GRWD1
    chr154170938541709508+CDS,intron-Distal3.852479.84695HepG2GRWD1
    chr154176772241767750+CDS,intron-Proximal3.304975.35144K562ZNF622
    chr154175005141750070+CDS3.713035.42720K562UCHL5
    chr154175001441750075+CDS,intron-Proximal4.487534.02380K562TRA2A
    chr154176940741769476+CDS3.246435.12210K562ZNF622
    chr154175696841757079+CDS,intron-Proximal4.945066.09394K562CPSF6
    chr154176682341766899+CDS3.3691411.74712K562ZNF622
    chr154176336841763403+CDS,intron-Proximal3.466388.75642K562UCHL5
    chr154176936241769396+CDS,intron-Proximal3.996856.46803K562UCHL5
    chr154174986941749939+CDS,intron-Proximal4.3868711.98560K562UCHL5
    chr154175833841758409+CDS,intron-Proximal4.0600912.99675K562UCHL5
    chr154174509741745236+CDS,intron-Proximal3.056206.37665HepG2AQR
    chr154175833741758357+CDS,intron-Proximal4.198863.06595HepG2BCLAF1
    chr154176962841769684+CDS,intron-Proximal3.504974.57435K562SF3B4
    chr154174997941750027+CDS5.063897.15433K562ZNF622
    chr154175705941757084+CDS,intron-Proximal4.530344.34038HepG2BCLAF1
    chr154177130341771340+CDS4.304504.39669K562BUD13
    chr154175700841757084+CDS,intron-Proximal4.133624.02380K562TRA2A
    chr154176337441763504+CDS3.653648.73356HepG2GRWD1
    chr154174995641750032+CDS3.9535710.82249K562UCHL5
    chr154176349241763534+CDS4.026883.02457HepG2BCLAF1
    chr154177070941770766+CDS,intron-Proximal3.094185.62171K562AQR
    chr154175702141757077+CDS3.879408.54758K562ZNF622
    chr154176811641768252+intron-Distal,intron-Proximal4.191583.50357HepG2QKI
    chr154175733141757415+intron-Distal4.831706.57498HepG2PCBP2
    chr154172178741721884+intron-Distal4.494773.80778HepG2QKI
    chr154175714741757209+intron-Distal,intron-Proximal3.909933.08314K562TARDBP
    chr154170987841709944+intron-Distal3.940483.63122HepG2PRPF4
    chr154175731941757401+intron-Distal4.394585.16181K562PTBP1
    chr154175732041757397+intron-Distal4.583304.74221HepG2PTBP1
    chr154177254041772617+intron-Proximal4.932626.04760K562AQR
    chr154176781441767899+intron-Proximal5.024574.47382K562EFTUD2
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for RTF1 is not avaliable on ENCORE database.



    Diffrential Expression
    • 680 differentially expressed genes after Knockdown/Knockout RTF1 protein.  





    • 70 RBPs can affect the levels of RTF1.  







    680 differentially expressed genes after Knockdown/Knockout RTF1 protein :

    Only display 100 entries as example. Please click "View All" button to see all 680 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    FAM214BENSG00000005238.1575.78490149.69650-0.982103.445901.73790HepG2RTF1
    WDR54ENSG00000005448.12117.21510216.23940-0.883503.165401.53420HepG2RTF1
    ITGA3ENSG00000005884.1320.3673064.25800-1.657604.254702.34190HepG2RTF1
    CELSR3ENSG00000008300.10541.53140805.45320-0.572803.072701.46320HepG2RTF1
    IL32ENSG00000008517.122860.938801995.293900.519803.310701.63630HepG2RTF1
    FAM76AENSG00000009780.11238.52750128.705300.890003.928202.08920HepG2RTF1
    NCAPD2ENSG00000010292.82723.388003836.73580-0.494502.939301.36940HepG2RTF1
    CHDHENSG00000016391.62195.486903084.43510-0.490502.974301.39470HepG2RTF1
    SRCIN1ENSG00000017373.1183.97430184.98950-1.139403.566301.82750HepG2RTF1
    CYP24A1ENSG00000019186.5975.77640362.839901.4271015.5244012.30130HepG2RTF1
    PLEKHB1ENSG00000021300.91190.235601728.77870-0.538503.243401.58430HepG2RTF1
    BIRC3ENSG00000023445.9208.8081090.618201.204205.913703.72640HepG2RTF1
    GCLMENSG00000023909.5674.09290393.077500.778004.899202.85430HepG2RTF1
    FASENSG00000026103.15338.45640203.790400.731803.498601.77970HepG2RTF1
    PI4K2BENSG00000038210.91251.70170808.780000.630004.006702.15520HepG2RTF1
    C6ENSG00000039537.946.8860012.845701.867803.817202.01390HepG2RTF1
    PHLPP2ENSG00000040199.14871.57050572.200700.607003.500101.78020HepG2RTF1
    CTNNA1ENSG00000044115.162929.344105511.72830-0.911909.065706.46740HepG2RTF1
    RRM2BENSG00000048392.72521.570201082.641401.2197014.2541011.08910HepG2RTF1
    KITLGENSG00000049130.9414.91550191.299901.116907.510205.09530HepG2RTF1
    HEXBENSG00000049860.92360.175301514.256000.640204.491202.52680HepG2RTF1
    FAM168AENSG00000054965.6903.262501410.14690-0.642604.232102.32390HepG2RTF1
    C4orf27ENSG00000056050.6284.59300176.607300.688302.869401.31510HepG2RTF1
    ALDH18A1ENSG00000059573.44675.212206947.35330-0.571403.985002.13950HepG2RTF1
    DNAJC25ENSG00000059769.15545.22120347.389600.650203.432801.72950HepG2RTF1
    BCAT1ENSG00000060982.101852.981901081.765300.776406.132103.90600HepG2RTF1
    SPAG4ENSG00000061656.5255.70490547.88870-1.099403.203901.55980HepG2RTF1
    DGAT2ENSG00000062282.10406.16610633.24430-0.640703.445201.73790HepG2RTF1
    TM7SF3ENSG00000064115.62469.010001742.832000.502403.047401.44470HepG2RTF1
    ABCA7ENSG00000064687.8332.96780810.74550-1.283903.431201.72950HepG2RTF1
    BCAS1ENSG00000064787.8255.16160137.460500.892304.092402.21600HepG2RTF1
    FAM107BENSG00000065809.91302.10910875.216400.573003.458101.74690HepG2RTF1
    MTHFD2ENSG00000065911.72423.026001694.142700.516203.181901.54430HepG2RTF1
    FGFR2ENSG00000066468.1633.44190107.43600-1.683704.850702.81390HepG2RTF1
    LRRC40ENSG00000066557.51025.08070659.574800.636003.835102.02700HepG2RTF1
    KLF6ENSG00000067082.103424.963002350.112600.543303.528501.79690HepG2RTF1
    JMJD6ENSG00000070495.10459.88850743.13690-0.692304.181902.28250HepG2RTF1
    ASNSENSG00000070669.12532.42390322.586200.722804.038302.18000HepG2RTF1
    SLC12A3ENSG00000070915.5117.9107034.582701.769507.207804.84720HepG2RTF1
    PPP2R2CENSG00000074211.9100.41800183.49180-0.869703.217701.57040HepG2RTF1
    NTN4ENSG00000074527.7365.75220233.607700.646702.974901.39470HepG2RTF1
    ENO1ENSG00000074800.943684.3015060389.59770-0.467202.905801.34670HepG2RTF1
    FOSL2ENSG00000075426.71949.721401346.350700.534103.229901.57760HepG2RTF1
    BAZ2AENSG00000076108.72862.156304753.42520-0.731906.088703.87180HepG2RTF1
    ANKRD13AENSG00000076513.121602.87980976.259100.715205.168103.07310HepG2RTF1
    MCAMENSG00000076706.101440.57690899.854100.678804.795302.77440HepG2RTF1
    DNAJC10ENSG00000077232.125140.874203559.174200.530403.423701.72430HepG2RTF1
    SNRPAENSG00000077312.4612.77860973.74930-0.668204.113202.22830HepG2RTF1
    FGFR1ENSG00000077782.15851.507301901.04110-1.158707.578905.14920HepG2RTF1
    PIAS2ENSG00000078043.11556.42680809.71530-0.541202.950601.37600HepG2RTF1
    C12orf5ENSG00000078237.4284.72870115.397901.302908.175205.65730HepG2RTF1
    BPIFB2ENSG00000078898.66639.5184010948.73330-0.721606.031503.82960HepG2RTF1
    TNS1ENSG00000079308.122556.963203799.22270-0.571303.975802.13290HepG2RTF1
    PGM1ENSG00000079739.111736.440402446.22430-0.494402.909301.34840HepG2RTF1
    OSTM1ENSG00000081087.10571.56620381.978200.581302.884201.32790HepG2RTF1
    CADPS2ENSG00000081803.111147.97420785.444700.547403.140001.51270HepG2RTF1
    ZNF8ENSG00000083842.838.153405.967002.676604.008902.15560HepG2RTF1
    SLC6A14ENSG00000087916.7378.647701196.18650-1.6595021.6619018.13790HepG2RTF1
    FER1L4ENSG00000088340.11164.34030404.52030-1.299509.765407.05900HepG2RTF1
    CRLS1ENSG00000088766.72375.961501523.543900.641004.497002.52960HepG2RTF1
    TESCENSG00000088992.13380.29960590.71740-0.635302.866801.31320HepG2RTF1
    RPL6ENSG00000089009.117887.0692014213.34430-0.849708.316505.77330HepG2RTF1
    SLC23A2ENSG00000089057.105939.989104176.897300.507903.297301.62710HepG2RTF1
    PXNENSG00000089159.11755.713901100.95700-0.542803.021501.42540HepG2RTF1
    KIF16BENSG00000089177.13456.89430731.10810-0.678204.040102.18000HepG2RTF1
    PEBP1ENSG00000089220.413183.424909455.059400.479503.064001.45750HepG2RTF1
    GRAMD1AENSG00000089351.10482.299101017.29440-1.076703.649301.88970HepG2RTF1
    ZNF268ENSG00000090612.16879.75990497.547700.822205.801303.63630HepG2RTF1
    OSBPL8ENSG00000091039.121981.087201374.362500.527403.167701.53570HepG2RTF1
    TFENSG00000091513.10142439.60550202192.87410-0.505403.391301.69910HepG2RTF1
    SCFD1ENSG00000092108.163876.108702647.907100.549703.575701.83280HepG2RTF1
    IL11ENSG00000095752.246.6468099.95350-1.099502.939501.36940HepG2RTF1
    C19orf77ENSG00000095932.5179.43090312.43400-0.800103.852402.03460HepG2RTF1
    PGCENSG00000096088.121716.289704330.02150-1.335109.698707.00160HepG2RTF1
    SCDENSG00000099194.555447.1859084442.66120-0.606903.719001.94090HepG2RTF1
    NRP1ENSG00000099250.131749.01580945.613100.887107.662405.21750HepG2RTF1
    SNAP29ENSG00000099940.7269.21980564.32750-1.067708.082405.58830HepG2RTF1
    CABIN1ENSG00000099991.121523.094602545.44990-0.740903.941402.10110HepG2RTF1
    SEC14L2ENSG00000100003.1392.54390165.14680-0.835502.905701.34670HepG2RTF1
    CRYBB2P1ENSG00000100058.8237.17440381.96040-0.687503.307401.63460HepG2RTF1
    MFNGENSG00000100060.1352.86910107.67870-1.026203.069101.46120HepG2RTF1
    XBP1ENSG00000100219.123491.916504958.64220-0.505903.194501.55210HepG2RTF1
    TIMP3ENSG00000100234.113872.846705770.12740-0.575204.046602.18260HepG2RTF1
    L3MBTL2ENSG00000100395.10296.52100475.57400-0.681503.510201.78510HepG2RTF1
    ACO2ENSG00000100412.111112.407401685.62450-0.599603.007901.41620HepG2RTF1
    NINENSG00000100503.191318.49330886.357200.572803.433901.72950HepG2RTF1
    C14orf93ENSG00000100802.10194.72260330.69020-0.764103.628901.87480HepG2RTF1
    APEX1ENSG00000100823.72697.429803977.81310-0.560403.733401.95300HepG2RTF1
    BRMS1LENSG00000100916.91404.64660903.500600.636504.159202.26280HepG2RTF1
    SGK2ENSG00000101049.10338.04340189.748900.833004.304302.38080HepG2RTF1
    TUBB1ENSG00000101162.31228.813201960.79990-0.674204.953402.88960HepG2RTF1
    SLCO4A1ENSG00000101187.11395.65130729.33230-0.882303.125501.50450HepG2RTF1
    RNF24ENSG00000101236.12677.141301452.38950-1.1009011.033008.22020HepG2RTF1
    TM9SF4ENSG00000101337.114126.176906456.59560-0.646004.936202.87880HepG2RTF1
    SAMHD1ENSG00000101347.71437.00140999.742500.523303.039701.43990HepG2RTF1
    JAG1ENSG00000101384.72698.272901837.469700.554203.585501.84160HepG2RTF1
    MIB1ENSG00000101752.71637.430302464.45670-0.589804.039802.18000HepG2RTF1
    RBBP8ENSG00000101773.12913.40830601.136000.603503.480001.76790HepG2RTF1
    FMR1ENSG00000102081.92945.512301834.622200.682905.082103.00070HepG2RTF1
    SCML2ENSG00000102098.13401.47670237.727800.755903.862102.04190HepG2RTF1
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    70 RBPs can affect the gene expression of RTF1 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    RTF1ENSG00000137815.101384.608001167.675700.245702.685902.08620HepG2ACO1
    RTF1ENSG00000137815.101205.997101563.89200-0.374903.313601.78380HepG2ATP5C1
    RTF1ENSG00000137815.10777.855201034.36980-0.411202.150101.35440HepG2BCLAF1
    RTF1ENSG00000137815.10992.061001825.56770-0.8798014.7998013.56770HepG2BOP1
    RTF1ENSG00000137815.101590.785602122.35610-0.415902.636001.68790HepG2CCAR1
    RTF1ENSG00000137815.10567.16770780.32380-0.460302.039501.38850HepG2CNOT7
    RTF1ENSG00000137815.101140.640901675.98850-0.555205.832504.86710HepG2CPSF6
    RTF1ENSG00000137815.10770.142101427.19180-0.8900015.3152012.96730HepG2CPSF7
    RTF1ENSG00000137815.10691.199001048.65890-0.601408.585806.81740HepG2YBX3
    RTF1ENSG00000137815.101244.636501597.07990-0.359704.341103.56880HepG2CELF1
    RTF1ENSG00000137815.101363.125101717.13960-0.333105.121304.15890HepG2DAZAP1
    RTF1ENSG00000137815.101308.566701079.919500.277003.391202.47950HepG2DDX19B
    RTF1ENSG00000137815.10839.995601193.07240-0.506203.563002.87010HepG2DDX6
    RTF1ENSG00000137815.10877.344701117.14180-0.348603.816703.04550HepG2DKC1
    RTF1ENSG00000137815.10807.378401029.72920-0.350903.454302.67510HepG2DNAJC21
    RTF1ENSG00000137815.10787.485001020.60050-0.374104.952404.11960HepG2DNAJC2
    RTF1ENSG00000137815.10730.913001048.14260-0.520103.466202.21850HepG2AGO1
    RTF1ENSG00000137815.10662.060001146.91610-0.792708.650507.63880HepG2EIF2S1
    RTF1ENSG00000137815.101283.694101694.16130-0.400305.886304.74460HepG2EIF4G1
    RTF1ENSG00000137815.101776.933002095.26820-0.237702.528201.94950HepG2ETF1
    RTF1ENSG00000137815.10805.177901084.74770-0.430003.942402.61360HepG2FASTKD2
    RTF1ENSG00000137815.101107.82670800.754800.468204.602803.60410HepG2FUBP3
    RTF1ENSG00000137815.10864.366101186.30540-0.456803.282802.56120HepG2G3BP1
    RTF1ENSG00000137815.101453.674801899.91260-0.386202.738202.10000HepG2GPKOW
    RTF1ENSG00000137815.101205.745401526.06690-0.339904.004903.15800HepG2HNRNPF
    RTF1ENSG00000137815.101087.347401564.14830-0.5246010.973009.70820HepG2HNRNPL
    RTF1ENSG00000137815.101151.897501813.11720-0.654507.646906.65980HepG2HNRNPLL
    RTF1ENSG00000137815.10899.652301173.36100-0.383205.926804.89050HepG2ILF2
    RTF1ENSG00000137815.101094.030001702.71810-0.6382010.938809.45900HepG2NOL12
    RTF1ENSG00000137815.10871.601201242.44140-0.511408.138807.18810HepG2PCBP1
    RTF1ENSG00000137815.10969.485701359.43600-0.487707.792706.57610HepG2PRPF4
    RTF1ENSG00000137815.101036.504201264.20980-0.286502.762402.21520HepG2PTBP1
    RTF1ENSG00000137815.10756.171301625.42490-1.1040023.0831021.58470HepG2PUF60
    RTF1ENSG00000137815.10954.352601189.34920-0.317603.777503.08060HepG2PUS1
    RTF1ENSG00000137815.102186.499501751.256800.320103.837903.25390HepG2RBM22
    RTF1ENSG00000137815.101679.886201406.961400.255702.629402.09960HepG2NELFE
    RTF1ENSG00000137815.101230.990301643.75090-0.417203.734202.95920HepG2RPLP0
    RTF1ENSG00000137815.101216.37440882.446100.462903.578902.88910HepG2RPS19
    RTF1ENSG00000137815.10668.57420893.32230-0.418102.144901.44490HepG2RRP9
    RTF1ENSG00000137815.10640.216101363.55320-1.0907010.666707.87730HepG2RTF1
    RTF1ENSG00000137815.101266.393901558.60450-0.299503.961803.14490HepG2SLBP
    RTF1ENSG00000137815.10669.177501277.95620-0.933409.292307.48120HepG2SMNDC1
    RTF1ENSG00000137815.101583.772001977.98070-0.320704.676204.07450HepG2SRFBP1
    RTF1ENSG00000137815.101723.105801373.857300.326704.278803.72240HepG2SRSF1
    RTF1ENSG00000137815.101392.017501604.91430-0.205301.826201.30310HepG2SRSF5
    RTF1ENSG00000137815.101125.364701499.26480-0.413905.672104.73310HepG2SRSF7
    RTF1ENSG00000137815.101320.770001717.35660-0.378805.845205.15270HepG2SSB
    RTF1ENSG00000137815.10809.098001171.24630-0.533702.960201.71490HepG2SUB1
    RTF1ENSG00000137815.10677.246901181.64500-0.8030012.5302010.64920HepG2SUPT6H
    RTF1ENSG00000137815.101538.569401234.834300.317203.344502.73690HepG2TAF15
    RTF1ENSG00000137815.101443.548001767.09790-0.291802.111301.46620HepG2TARDBP
    RTF1ENSG00000137815.10778.947301116.22130-0.519006.320505.62070HepG2TIAL1
    RTF1ENSG00000137815.10460.642901126.15160-1.2897039.4317037.60700HepG2TRIM56
    RTF1ENSG00000137815.102011.046201496.969300.425803.799903.06820HepG2U2AF1
    RTF1ENSG00000137815.101192.318501418.47420-0.250602.699202.10800HepG2UTP3
    RTF1ENSG00000137815.10993.358001615.85990-0.7019020.1796019.03670HepG2ZNF622
    RTF1ENSG00000137815.101282.565201548.13330-0.271503.123602.10810K562BCLAF1
    RTF1ENSG00000137815.101975.954502491.83240-0.334702.694001.83290K562BOP1
    RTF1ENSG00000137815.101879.917703484.17630-0.890107.432705.64330K562CNOT7
    RTF1ENSG00000137815.102145.281102649.61160-0.304602.963702.15200K562CPSF6
    RTF1ENSG00000137815.102783.851903174.74980-0.189601.870101.31480K562DDX47
    RTF1ENSG00000137815.101709.098901419.140900.268102.806202.19720K562FXR1
    RTF1ENSG00000137815.101794.357402865.32080-0.675208.443107.10930K562GRSF1
    RTF1ENSG00000137815.101383.006901753.40400-0.342402.504601.33510K562HNRNPK
    RTF1ENSG00000137815.102850.982403482.05010-0.288502.047801.35890K562HSPD1
    RTF1ENSG00000137815.101630.766002322.88790-0.5104011.441809.91880K562MTPAP
    RTF1ENSG00000137815.102124.122702581.06420-0.281104.212303.31250K562NSUN2
    RTF1ENSG00000137815.101322.412301641.63400-0.312002.453801.53610K562PCBP2
    RTF1ENSG00000137815.102164.988302915.15140-0.429204.001202.99110K562PPIG
    RTF1ENSG00000137815.101332.375301792.56320-0.428004.988304.12060K562PTBP1
    RTF1ENSG00000137815.102769.687803829.76700-0.467505.780604.60610K562PUF60
    RTF1ENSG00000137815.104780.994604073.246100.231002.732501.67330K562PUM1
    RTF1ENSG00000137815.102708.293802288.485300.242902.505901.93710K562RBM15
    RTF1ENSG00000137815.10811.191601686.88470-1.056207.417903.65170K562RTF1
    RTF1ENSG00000137815.101907.962302546.66250-0.416607.103405.84160K562SF3A3
    RTF1ENSG00000137815.101166.715201439.83770-0.303502.811601.94920K562SF3B4
    RTF1ENSG00000137815.101474.013001932.24490-0.390505.822404.10780K562SRSF7
    RTF1ENSG00000137815.102324.074201779.402700.385203.539802.61070K562SYNCRIP
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for RTF1 is not available on ENCORE database.





    3 RBPs can affect the splicing of RTF1 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SERTF1ENSG00000137815.10chr15+4176837841768528417678364176801741768643417687210.172000.000000.00000includedK562AQR
    SERTF1ENSG00000137815.10chr15+417677224176781041766817417669004176790941768017-0.183000.000000.00000excludedK562AQR
    SERTF1ENSG00000137815.10chr15+417450984174524641730518417306294174986941750074-0.074000.000440.00612excludedK562AQR
    A3SSRTF1ENSG00000137815.10chr15+4176334941763547417633694176354741762429417625900.100000.000000.00000longerK562AQR
    A3SSRTF1ENSG00000137815.10chr15+4175830941758450417583384175845041756968417570830.051000.000220.00178longerK562AQR
    A3SSRTF1ENSG00000137815.10chr15+4176756641767784417677224176778441766722417669000.059000.002260.01437longerK562AQR
    MXERTF1ENSG00000137815.10chr15+4173051841730629417450984174524641709301417095114174986941750074-0.135000.000010.000422includedK562DROSHA
    MXERTF1ENSG00000137815.10chr15+41730434417306294174509841745246417093014170951141749869417500740.088000.000250.002691includedK562AQR
    MXERTF1ENSG00000137815.10chr15+4174509841745246417498694175007441730518417306294175696841757083-0.109000.015750.091092includedK562AQR
    MXERTF1ENSG00000137815.10chr15+41730518417306294174509841745246417093014170951141749869417500740.137000.000780.029251includedK562DDX55

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for RTF1 is not avaliable on ENCORE database.