JMJD6

General Information

Gene Name : JMJD6
Gene ID : ENSG00000070495.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: JMJD6)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	JMJD6	ENSG00000070495.14	12.08	14.81	13.45	ENCSR000AEF
HepG2	JMJD6	ENSG00000070495.14	33.71	26.55	30.13	ENCSR985KAT
K562	JMJD6	ENSG00000070495.14	26.39	25.70	26.05	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for JMJD6 is not avaliable on ENCORE database.

Proteins bound to RNA

JMJD6 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for JMJD6 is not avaliable on ENCORE database.

10 proteins are bound to JMJD6 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	74717788	74717895	-	CDS,intron-Distal,intron-Proximal	4.46234	16.48243	K562	PRPF8
chr17	74717851	74717943	-	CDS,intron-Distal,intron-Proximal	6.32376	12.84241	HepG2	PRPF8
chr17	74722559	74722655	-	5'-UTR,intron-Distal,intron-Proximal	5.61892	9.75665	K562	DDX3X
chr17	74721787	74721861	-	CDS,intron-Distal	4.45683	8.63879	K562	UCHL5
chr17	74721548	74721603	-	CDS,intron-Distal,intron-Proximal	4.92200	7.15433	K562	ZNF622
chr17	74721681	74721778	-	CDS,intron-Distal	3.71117	7.10975	K562	UCHL5
chr17	74722544	74722679	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.62719	6.91244	HepG2	NCBP2
chr17	74721546	74721601	-	CDS,intron-Distal,intron-Proximal	3.35222	6.87198	K562	RBM15
chr17	74716404	74716456	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.76177	6.65114	HepG2	PRPF8
chr17	74721724	74721784	-	CDS,intron-Distal	3.91652	5.37538	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 21 entries

eCLIP assay for JMJD6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for JMJD6 is not available on ENCORE database.
125 RBPs can affect the levels of JMJD6.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for JMJD6 is not available on ENCORE database.

125 RBPs can affect the gene expression of JMJD6 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
JMJD6	ENSG00000070495.10	523.70850	1403.62570	-1.42230	34.22460	32.77880	HepG2	NELFE
JMJD6	ENSG00000070495.10	498.78490	1097.38970	-1.13760	32.46200	30.78040	HepG2	PUS1
JMJD6	ENSG00000070495.10	1901.30650	981.91960	0.95320	31.77120	30.55670	HepG2	SRFBP1
JMJD6	ENSG00000070495.10	453.40200	1232.08890	-1.44220	31.96890	30.33840	HepG2	TAF15
JMJD6	ENSG00000070495.10	432.55510	1030.75190	-1.25270	31.91080	30.26070	HepG2	DKC1
JMJD6	ENSG00000070495.10	504.40730	1307.41350	-1.37410	27.01150	25.43950	HepG2	RECQL
JMJD6	ENSG00000070495.10	174.16810	507.69960	-1.54350	24.28980	21.34520	HepG2	PKM
JMJD6	ENSG00000070495.10	2224.80550	1033.10600	1.10660	22.09380	20.58380	K562	PUS1
JMJD6	ENSG00000070495.10	1673.98590	905.92590	0.88570	20.60810	19.04790	HepG2	AUH
JMJD6	ENSG00000070495.10	439.35540	1302.83580	-1.56820	21.00610	18.67670	HepG2	G3BP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 140 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for JMJD6 is not available on ENCORE database.

5 RBPs can affect the splicing of JMJD6 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	JMJD6	ENSG00000070495.10	chr17	-	74717344	74717438	74716441	74716580	74717879	74718060	0.07800	0.00000	0.00007	included	K562	AQR
SE	JMJD6	ENSG00000070495.10	chr17	-	74717344	74717438	74716441	74716580	74717879	74718015	0.12600	0.00007	0.00450	included	HepG2	HNRNPC
SE	JMJD6	ENSG00000070495.10	chr17	-	74717344	74717438	74716441	74716580	74717879	74718015	0.18900	0.00016	0.01748	included	HepG2	IGF2BP3
SE	JMJD6	ENSG00000070495.10	chr17	-	74717344	74717433	74716441	74716580	74717879	74718015	0.06300	0.00018	0.00651	included	HepG2	HNRNPK
SE	JMJD6	ENSG00000070495.10	chr17	-	74717344	74717438	74716441	74716580	74717879	74718015	0.06400	0.00086	0.07503	included	HepG2	SUPV3L1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

JMJD6

General Information

Functions

Localization

Domains (AlphaFold: JMJD6)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for JMJD6 is not avaliable on ENCORE database.

10 proteins are bound to JMJD6 RNA:

eCLIP assay for JMJD6 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for JMJD6 is not available on ENCORE database.

125 RBPs can affect the gene expression of JMJD6 :

The Knockdown/knockout RNA-Seq assay for JMJD6 is not available on ENCORE database.

5 RBPs can affect the splicing of JMJD6 :

The Knockdown/knockout RNA-Seq assay for JMJD6 is not avaliable on ENCORE database.