JMJD6

General Information

Gene Name       : JMJD6
Gene ID             : ENSG00000070495.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: JMJD6)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878JMJD6ENSG00000070495.1412.0814.8113.45ENCSR000AEF
HepG2JMJD6ENSG00000070495.1433.7126.5530.13ENCSR985KAT
K562JMJD6ENSG00000070495.1426.3925.7026.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for JMJD6 is not avaliable on ENCORE database.



Proteins bound to RNA
  • JMJD6 RNA is bound by 10 proteins.  







eCLIP assay for JMJD6 is not avaliable on ENCORE database.





10 proteins are bound to JMJD6 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr177471640474716456-3'-UTR,CDS,intron-Distal,intron-Proximal3.761776.65114HepG2PRPF8
chr177471488174715013-3'-UTR,CDS,intron-Distal,intron-Proximal3.253304.77916HepG2AQR
chr177472255974722655-5'-UTR,intron-Distal,intron-Proximal5.618929.75665K562DDX3X
chr177472247374722559-5'-UTR,CDS,intron-Distal3.132153.95805K562DDX3X
chr177472254474722679-5'-UTR,CDS,intron-Distal,intron-Proximal3.627196.91244HepG2NCBP2
chr177472255674722623-5'-UTR,CDS,intron-Distal,intron-Proximal3.294783.73423K562UCHL5
chr177472154674721601-CDS,intron-Distal,intron-Proximal3.352226.87198K562RBM15
chr177472154674721600-CDS,intron-Distal,intron-Proximal3.102864.73488HepG2GRWD1
chr177472178774721861-CDS,intron-Distal4.456838.63879K562UCHL5
chr177471778874717895-CDS,intron-Distal,intron-Proximal4.4623416.48243K562PRPF8
chr177471798774718055-CDS,intron-Distal,intron-Proximal4.393034.00049HepG2CDC40
chr177472154874721603-CDS,intron-Distal,intron-Proximal4.922007.15433K562ZNF622
chr177472162374721686-CDS,intron-Distal3.232863.41665HepG2GRWD1
chr177472162574721708-CDS,intron-Distal3.106133.85473K562GRWD1
chr177472180474721857-CDS,intron-Distal3.273544.68262K562RBM15
chr177472172474721784-CDS,intron-Distal3.916525.37538K562ZNF622
chr177472242774722480-CDS,intron-Distal3.255563.31745K562ZNF622
chr177472168174721778-CDS,intron-Distal3.711177.10975K562UCHL5
chr177471797674718024-CDS,intron-Distal,intron-Proximal3.822433.00996K562BUD13
chr177471785174717943-CDS,intron-Distal,intron-Proximal6.3237612.84241HepG2PRPF8
chr177471979774719871-CDS,intron-Distal,intron-Proximal3.234653.47285K562PRPF8
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for JMJD6 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for JMJD6 is not available on ENCORE database.

  • 125 RBPs can affect the levels of JMJD6.  








The Knockdown/knockout RNA-Seq assay for JMJD6 is not available on ENCORE database.





125 RBPs can affect the gene expression of JMJD6 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
JMJD6ENSG00000070495.10673.28540985.63670-0.549804.487003.30890HepG2ABCF1
JMJD6ENSG00000070495.10730.530201499.51300-1.0375010.497909.52780HepG2AKAP1
JMJD6ENSG00000070495.10673.713201240.64050-0.880909.966808.53780HepG2ASCC1
JMJD6ENSG00000070495.101673.98590905.925900.8857020.6081019.04790HepG2AUH
JMJD6ENSG00000070495.10735.177101178.71990-0.681107.159005.95820HepG2CIRBP
JMJD6ENSG00000070495.10653.325101077.03720-0.7212015.4290014.12460HepG2CKAP4
JMJD6ENSG00000070495.10723.23580581.266900.315202.377001.43720HepG2YBX3
JMJD6ENSG00000070495.10281.92760429.31660-0.606703.756402.52130HepG2CSTF2
JMJD6ENSG00000070495.101204.493101019.564100.240402.230501.64270HepG2CELF1
JMJD6ENSG00000070495.101315.541201096.165700.263103.426402.61730HepG2DAZAP1
JMJD6ENSG00000070495.10551.20380996.38510-0.8541020.1671018.41240HepG2DDX19B
JMJD6ENSG00000070495.10468.20750665.22360-0.506703.880503.09060HepG2DDX21
JMJD6ENSG00000070495.10403.41850651.39020-0.691206.933605.49780HepG2DDX24
JMJD6ENSG00000070495.10484.83630633.89070-0.386702.664401.33290HepG2DDX52
JMJD6ENSG00000070495.101887.057001234.173500.612504.534003.75960HepG2DDX6
JMJD6ENSG00000070495.10432.555101030.75190-1.2527031.9108030.26070HepG2DKC1
JMJD6ENSG00000070495.10386.57630565.72230-0.549306.168205.25100HepG2DNAJC2
JMJD6ENSG00000070495.10356.35820756.28490-1.0856012.9584011.18670HepG2EEF2
JMJD6ENSG00000070495.10375.63900630.45310-0.747006.726404.99940HepG2EFTUD2
JMJD6ENSG00000070495.10396.63600613.92060-0.630204.433903.30960HepG2EIF3D
JMJD6ENSG00000070495.10384.11690628.47490-0.710307.365005.74660HepG2EIF3G
JMJD6ENSG00000070495.10811.015001310.51380-0.692306.509405.52790HepG2EIF4A3
JMJD6ENSG00000070495.10771.590801276.34270-0.726105.699204.73400HepG2EIF4B
JMJD6ENSG00000070495.10851.333901081.53470-0.345303.466402.54540HepG2EIF4G1
JMJD6ENSG00000070495.10463.14890853.62050-0.8821011.234809.27350HepG2ESF1
JMJD6ENSG00000070495.10758.981601040.18090-0.454705.529304.72830HepG2ETF1
JMJD6ENSG00000070495.10687.236901052.69880-0.615207.308105.95390HepG2EWSR1
JMJD6ENSG00000070495.10378.09020595.38430-0.655105.085302.80290HepG2EXOSC9
JMJD6ENSG00000070495.10421.22990548.72060-0.381502.576901.45220HepG2FAM120A
JMJD6ENSG00000070495.10409.40540634.15370-0.631305.739204.18680HepG2FASTKD2
JMJD6ENSG00000070495.10668.72520995.19470-0.573603.648802.77290HepG2FIP1L1
JMJD6ENSG00000070495.10649.77540944.12670-0.539005.488404.39120HepG2FUBP3
JMJD6ENSG00000070495.10409.55570747.68590-0.868406.750305.06800HepG2FUS
JMJD6ENSG00000070495.10654.945401322.84570-1.0142011.9526010.61720HepG2FXR1
JMJD6ENSG00000070495.10539.441701226.82190-1.1854015.9640014.42610HepG2G3BP1
JMJD6ENSG00000070495.10439.355401302.83580-1.5682021.0061018.67670HepG2G3BP2
JMJD6ENSG00000070495.10228.84650546.61280-1.2561015.0517013.12620HepG2GEMIN5
JMJD6ENSG00000070495.10582.794601028.53320-0.8195016.9634014.89630HepG2HDGF
JMJD6ENSG00000070495.10410.75040716.74130-0.803204.749502.88500HepG2HLTF
JMJD6ENSG00000070495.10388.02760576.22470-0.570504.423703.63180HepG2HNRNPA1
JMJD6ENSG00000070495.10422.39480640.94530-0.601604.787703.89380HepG2HNRNPC
JMJD6ENSG00000070495.10535.743101242.99560-1.2142013.9863012.53670HepG2HNRNPK
JMJD6ENSG00000070495.10375.17570602.25550-0.682802.934302.28900HepG2HNRNPLL
JMJD6ENSG00000070495.10475.87400686.47000-0.528604.936203.70600HepG2HNRNPM
JMJD6ENSG00000070495.10377.47340636.70760-0.7543010.469209.35280HepG2HNRNPU
JMJD6ENSG00000070495.10846.574101195.57310-0.498003.276601.93280HepG2HSPD1
JMJD6ENSG00000070495.10803.702901246.92680-0.633606.298705.31740HepG2IGF2BP2
JMJD6ENSG00000070495.10505.150201170.63330-1.212505.544604.17800HepG2IGF2BP3
JMJD6ENSG00000070495.10578.344001254.40250-1.1170012.9609010.70940HepG2KHSRP
JMJD6ENSG00000070495.10586.31970984.80090-0.7481015.6923013.52400HepG2KIF1C
JMJD6ENSG00000070495.10844.267101194.55930-0.500702.938501.65200HepG2KRR1
JMJD6ENSG00000070495.10772.897601130.67440-0.548803.787002.81260HepG2LARP4
JMJD6ENSG00000070495.10402.68160538.81530-0.420202.526701.44570HepG2LARP7
JMJD6ENSG00000070495.10306.06970565.78060-0.886408.681206.63810HepG2LIN28B
JMJD6ENSG00000070495.10336.76030540.57340-0.682805.103302.85880HepG2LSM11
JMJD6ENSG00000070495.10846.764001323.31020-0.644106.174005.20150HepG2MAGOH
JMJD6ENSG00000070495.10274.96080456.28690-0.730705.465503.26610HepG2MARK2
JMJD6ENSG00000070495.10915.834201330.62030-0.538904.285303.51620HepG2MATR3
JMJD6ENSG00000070495.10209.21530642.51330-1.6187014.4593012.22660HepG2METAP2
JMJD6ENSG00000070495.10285.79270614.41690-1.104204.936803.61760HepG2MTPAP
JMJD6ENSG00000070495.10271.54370487.20240-0.843307.604205.26950HepG2NIP7
JMJD6ENSG00000070495.10813.029001086.96180-0.418904.006603.08940HepG2NOL12
JMJD6ENSG00000070495.10168.29580458.93100-1.4473011.294508.43310HepG2PA2G4
JMJD6ENSG00000070495.101630.75350801.969601.023803.191802.23570HepG2PABPC1
JMJD6ENSG00000070495.101609.872701212.488100.408903.018002.26570HepG2PABPC4
JMJD6ENSG00000070495.10393.62200630.22920-0.679108.340106.99660HepG2PARN
JMJD6ENSG00000070495.10934.306001239.46960-0.407805.188704.39900HepG2PCBP1
JMJD6ENSG00000070495.10476.43110707.78400-0.571003.175202.06390HepG2PCBP2
JMJD6ENSG00000070495.10741.577701024.52840-0.466303.724201.70780HepG2PES1
JMJD6ENSG00000070495.10174.16810507.69960-1.5435024.2898021.34520HepG2PKM
JMJD6ENSG00000070495.10431.34800567.89200-0.396803.065702.29380HepG2PPIL4
JMJD6ENSG00000070495.10346.00460744.04710-1.104609.465107.36060HepG2PRPF6
JMJD6ENSG00000070495.10767.068901037.63230-0.435903.694003.01640HepG2PUF60
JMJD6ENSG00000070495.10649.823701101.53020-0.7614016.3250015.13020HepG2PUM1
JMJD6ENSG00000070495.10805.898701100.70220-0.449804.482703.63960HepG2PUM2
JMJD6ENSG00000070495.10498.784901097.38970-1.1376032.4620030.78040HepG2PUS1
JMJD6ENSG00000070495.101101.118201365.82970-0.310802.551401.94770HepG2QKI
JMJD6ENSG00000070495.10280.73940428.78010-0.611003.345601.44410HepG2RBM14
JMJD6ENSG00000070495.10864.395801271.35060-0.556607.099505.81240HepG2RBM15
JMJD6ENSG00000070495.10480.94680649.72020-0.433902.656801.68440HepG2RBM27
JMJD6ENSG00000070495.10523.708501403.62570-1.4223034.2246032.77880HepG2NELFE
JMJD6ENSG00000070495.10504.407301307.41350-1.3741027.0115025.43950HepG2RECQL
JMJD6ENSG00000070495.10250.45860597.38800-1.2541018.0024016.63920HepG2RPS19
JMJD6ENSG00000070495.10459.88850743.13690-0.692304.181902.28250HepG2RTF1
JMJD6ENSG00000070495.10775.37280567.015200.451403.021402.35360HepG2SAFB2
JMJD6ENSG00000070495.10867.77720596.062600.541803.819603.00130HepG2SF3B1
JMJD6ENSG00000070495.10747.078301313.01560-0.8136016.1004014.85330HepG2SF3B4
JMJD6ENSG00000070495.10529.82330661.23370-0.319602.755902.11250HepG2SMN1
JMJD6ENSG00000070495.101901.30650981.919600.9532031.7712030.55670HepG2SRFBP1
JMJD6ENSG00000070495.10876.502901370.56570-0.6449010.8460010.04390HepG2SRSF1
JMJD6ENSG00000070495.10783.422801024.55590-0.387104.230803.48550HepG2SRSF5
JMJD6ENSG00000070495.10724.494301191.01670-0.717106.906305.01680HepG2SSRP1
JMJD6ENSG00000070495.10844.389901165.16370-0.464606.871205.96800HepG2SUCLG1
JMJD6ENSG00000070495.10891.33040671.769400.407903.027702.04850HepG2SUPT6H
JMJD6ENSG00000070495.10372.68090680.20650-0.868007.045306.04460HepG2SUPV3L1
JMJD6ENSG00000070495.10453.402001232.08890-1.4422031.9689030.33840HepG2TAF15
JMJD6ENSG00000070495.10737.704001169.85500-0.665202.882801.79410HepG2TBRG4
JMJD6ENSG00000070495.10760.027601131.94030-0.574704.476403.42150HepG2TIA1
JMJD6ENSG00000070495.10417.31560618.67340-0.568005.282004.63690HepG2TIAL1
JMJD6ENSG00000070495.10442.79920685.84850-0.631203.625301.95180HepG2TRA2A
JMJD6ENSG00000070495.10296.97410487.82260-0.716004.852802.80060HepG2TROVE2
JMJD6ENSG00000070495.10686.006901013.78430-0.563505.905104.56450HepG2TUFM
JMJD6ENSG00000070495.101254.79430851.169100.559805.017604.18520HepG2U2AF1
JMJD6ENSG00000070495.10809.751901073.11510-0.406302.226501.48000HepG2UBE2L3
JMJD6ENSG00000070495.10767.249501053.74840-0.457805.702504.24760HepG2UTP18
JMJD6ENSG00000070495.10737.56400989.79280-0.424404.910804.15170HepG2UTP3
JMJD6ENSG00000070495.10535.03230751.14640-0.489502.605801.58110HepG2XRCC6
JMJD6ENSG00000070495.101472.758601001.204600.556707.898407.00940K562AGGF1
JMJD6ENSG00000070495.101500.385501100.220300.447404.677103.31920K562AKAP8
JMJD6ENSG00000070495.102060.637501041.810500.9839020.1166018.02820K562AKAP8L
JMJD6ENSG00000070495.102524.725401481.895400.7686012.8232011.69300K562AQR
JMJD6ENSG00000070495.101301.617801093.132300.251702.320901.49160K562ATP5C1
JMJD6ENSG00000070495.10806.23930627.359700.361803.600502.06550K562DDX27
JMJD6ENSG00000070495.101486.137201120.988900.406705.631804.32730K562DKC1
JMJD6ENSG00000070495.10901.40030601.415600.583705.191803.92020K562EFTUD2
JMJD6ENSG00000070495.101107.635601733.93950-0.6466013.3902011.41090K562EIF4G2
JMJD6ENSG00000070495.10360.92000610.38360-0.758002.362301.71640K562G3BP2
JMJD6ENSG00000070495.10934.74490680.582900.457703.089202.10130K562HNRNPM
JMJD6ENSG00000070495.10961.52950758.707400.341702.516001.39230K562IGF2BP3
JMJD6ENSG00000070495.101677.072601105.580100.601008.231106.61280K562KIF1C
JMJD6ENSG00000070495.101517.560601058.345600.519803.919002.56600K562MAK16
JMJD6ENSG00000070495.101633.685101238.534700.399404.230203.06660K562MBNL1
JMJD6ENSG00000070495.101418.83210868.126700.708604.601503.37430K562NAA15
JMJD6ENSG00000070495.101009.81540697.229300.534305.187803.83670K562PCBP2
JMJD6ENSG00000070495.10655.97290978.54490-0.577004.732803.64710K562PCBP3
JMJD6ENSG00000070495.101385.516601781.69810-0.362803.758302.09370K562PNPT1
JMJD6ENSG00000070495.10550.80550750.58460-0.446503.810302.86400K562POLR2G
JMJD6ENSG00000070495.101159.07710585.248600.9858013.6220011.94820K562PRPF8
JMJD6ENSG00000070495.101063.59330761.447800.482005.130204.24890K562PTBP1
JMJD6ENSG00000070495.102376.210201891.808200.328802.723801.91420K562PUF60
JMJD6ENSG00000070495.101601.978802012.59390-0.329203.794502.52660K562PUM1
JMJD6ENSG00000070495.101625.085401971.57700-0.278803.401002.33430K562PUM2
JMJD6ENSG00000070495.102224.805501033.106001.1066022.0938020.58380K562PUS1
JMJD6ENSG00000070495.101854.416201006.675900.8813011.2790010.10160K562RBM15
JMJD6ENSG00000070495.10775.02460596.086400.378602.090701.38520K562RPS19
JMJD6ENSG00000070495.101480.66100970.775200.608902.499601.37970K562SF1
JMJD6ENSG00000070495.101258.640701043.236700.270702.590301.80050K562SF3A3
JMJD6ENSG00000070495.101216.51010746.517900.7044010.056908.72220K562SRSF1
JMJD6ENSG00000070495.10365.81210543.24450-0.570505.067903.24320K562SSB
JMJD6ENSG00000070495.101679.585001047.546900.681003.735402.16120K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for JMJD6 is not available on ENCORE database.





5 RBPs can affect the splicing of JMJD6 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEJMJD6ENSG00000070495.10chr17-7471734474717433747164417471658074717879747180150.063000.000180.00651includedHepG2HNRNPK
SEJMJD6ENSG00000070495.10chr17-7471734474717438747164417471658074717879747180600.078000.000000.00007includedK562AQR
SEJMJD6ENSG00000070495.10chr17-7471734474717438747164417471658074717879747180150.189000.000160.01748includedHepG2IGF2BP3
SEJMJD6ENSG00000070495.10chr17-7471734474717438747164417471658074717879747180150.064000.000860.07503includedHepG2SUPV3L1
SEJMJD6ENSG00000070495.10chr17-7471734474717438747164417471658074717879747180150.126000.000070.00450includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for JMJD6 is not avaliable on ENCORE database.