FAM107B

General Information

Gene Name       : FAM107B
Gene ID             : ENSG00000065809.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM107B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM107BENSG00000065809.13134.12110.51122.31ENCSR000AEF
HepG2FAM107BENSG00000065809.1323.7343.6733.70ENCSR985KAT
K562FAM107BENSG00000065809.131.471.291.38ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM107B is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM107B RNA is bound by 12 proteins.  







eCLIP assay for FAM107B is not avaliable on ENCORE database.





12 proteins are bound to FAM107B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr101456318114563314-3'-UTR,CDS,intron-Distal,intron-Proximal3.078205.82908HepG2AQR
chr101456392714564030-3'-UTR,CDS,intron-Distal,intron-Proximal4.583524.92499HepG2AQR
chr101461413714614188-5'-UTR,intron-Distal,intron-Proximal4.7029610.47564HepG2HNRNPM
chr101464626014646319-5'-UTR,intron-Distal,intron-Proximal4.8141911.03866HepG2DDX3X
chr101464631114646402-5'-UTR,intron-Distal,intron-Proximal4.552765.32122HepG2NCBP2
chr101464631914646398-5'-UTR,intron-Distal,intron-Proximal7.1516514.96196HepG2DDX3X
chr101461644714616512-intron-Distal4.432283.97018HepG2HNRNPM
chr101461657514616712-intron-Distal6.2963017.57118HepG2QKI
chr101464215014642262-intron-Distal3.689934.38996HepG2HNRNPM
chr101462581314625883-intron-Distal3.290855.89614HepG2HNRNPM
chr101464226214642357-intron-Distal3.320193.68481HepG2HNRNPM
chr101461214614612219-intron-Distal4.503723.45317HepG2HNRNPL
chr101463644914636506-intron-Distal4.482086.10365HepG2HNRNPC
chr101463007414630178-intron-Distal5.393875.85495HepG2QKI
chr101458802114588070-intron-Distal4.143373.60235HepG2HNRNPM
chr101460865714608707-intron-Distal3.770023.16028HepG2SUGP2
chr101462788114627931-intron-Distal3.747674.87260HepG2HNRNPM
chr101463011014630229-intron-Distal5.269828.52926HepG2RBFOX2
chr101461651014616575-intron-Distal4.610945.54528HepG2QKI
chr101461766814617748-intron-Distal4.579155.68226HepG2HNRNPM
chr101464603714646118-intron-Distal4.622965.49785HepG2XRN2
chr101461081314610873-intron-Distal3.402704.94367HepG2PCBP2
chr101464334514643454-intron-Distal3.424719.85316HepG2U2AF2
chr101461073814610813-intron-Distal4.6688311.30792HepG2PCBP2
chr101462767714627723-intron-Distal4.932285.68226HepG2HNRNPM
chr101464579514645928-intron-Distal4.835476.90747HepG2XRN2
chr101463786814637984-intron-Distal3.982414.38996HepG2HNRNPM
chr101464059614640650-intron-Distal3.488326.18434HepG2HNRNPM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM107B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM107B is not available on ENCORE database.

  • 123 RBPs can affect the levels of FAM107B.  








The Knockdown/knockout RNA-Seq assay for FAM107B is not available on ENCORE database.





123 RBPs can affect the gene expression of FAM107B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM107BENSG00000065809.9969.48430578.187400.745608.714106.93240HepG2AATF
FAM107BENSG00000065809.9716.58360945.03600-0.399202.825001.81900HepG2ADAR
FAM107BENSG00000065809.92131.18450894.847101.2518016.5118015.32360HepG2AKAP1
FAM107BENSG00000065809.9993.41040690.918500.523803.984802.73980HepG2AKAP8
FAM107BENSG00000065809.91331.81310871.232900.6122011.149809.74410HepG2AKAP8L
FAM107BENSG00000065809.91004.75760740.457900.440302.962302.15060HepG2ASCC1
FAM107BENSG00000065809.91732.620201388.738200.319104.185803.37430HepG2AUH
FAM107BENSG00000065809.9605.593401242.82100-1.0372014.2380013.02910HepG2BOP1
FAM107BENSG00000065809.91682.58770703.470801.2580023.7975021.82320HepG2CIRBP
FAM107BENSG00000065809.9654.92640866.98430-0.404704.921504.08190HepG2CKAP4
FAM107BENSG00000065809.91692.18970932.248500.860006.823705.62260HepG2CNOT7
FAM107BENSG00000065809.9894.207901141.00710-0.351601.984601.39160HepG2CPSF6
FAM107BENSG00000065809.9943.52950591.790600.672904.799202.85470HepG2CSTF2T
FAM107BENSG00000065809.92964.848001375.767501.1076040.5247038.64990HepG2CELF1
FAM107BENSG00000065809.9639.92730801.97280-0.325603.349102.44120HepG2DDX19B
FAM107BENSG00000065809.9820.99600638.399700.362802.403201.76590HepG2DDX21
FAM107BENSG00000065809.91073.90430624.322300.7824011.083309.30020HepG2DDX24
FAM107BENSG00000065809.9620.74880824.99670-0.410402.904301.87030HepG2DDX5
FAM107BENSG00000065809.91465.57750736.197600.9932012.3810011.18600HepG2DDX6
FAM107BENSG00000065809.9625.72150917.80570-0.552704.742503.47270HepG2DHX30
FAM107BENSG00000065809.9885.99790587.534200.592504.035002.68080HepG2AGO1
FAM107BENSG00000065809.91217.37480707.961000.781906.717205.81970HepG2EIF2S1
FAM107BENSG00000065809.9982.01520744.239900.399903.759802.39930HepG2EIF2S2
FAM107BENSG00000065809.91347.42020665.726301.0171015.0603013.15190HepG2EIF3D
FAM107BENSG00000065809.9892.18870602.598000.566105.896104.40510HepG2EIF3G
FAM107BENSG00000065809.92015.77630782.494501.3651024.2549022.41140HepG2EIF4A3
FAM107BENSG00000065809.91477.08090761.650000.955407.079906.00790HepG2EIF4B
FAM107BENSG00000065809.91856.309401459.425800.346904.668203.62420HepG2EIF4G1
FAM107BENSG00000065809.91119.837401398.05820-0.320102.430101.66420HepG2EIF4G2
FAM107BENSG00000065809.92458.764301594.434000.6248015.6668014.42840HepG2ETF1
FAM107BENSG00000065809.91585.72790847.375500.904005.981504.75160HepG2EWSR1
FAM107BENSG00000065809.9906.72900608.161700.576105.726204.17510HepG2FASTKD2
FAM107BENSG00000065809.93430.80460990.429201.7923045.9889043.62730HepG2FIP1L1
FAM107BENSG00000065809.9546.289801142.90110-1.065005.540304.10860HepG2FTO
FAM107BENSG00000065809.9251.27430371.64810-0.564703.311502.45670HepG2FUBP3
FAM107BENSG00000065809.91297.96580789.158200.717807.825506.70830HepG2FXR1
FAM107BENSG00000065809.9819.98690592.746900.468103.382602.38000HepG2GEMIN5
FAM107BENSG00000065809.91516.27930888.992900.770205.055003.67310HepG2GNB2L1
FAM107BENSG00000065809.9611.40240862.95180-0.497202.665001.57440HepG2GRSF1
FAM107BENSG00000065809.91449.71190829.908400.804606.354204.15770HepG2GTF2F1
FAM107BENSG00000065809.91278.45790844.166500.598703.200801.70060HepG2HLTF
FAM107BENSG00000065809.9532.19740769.61490-0.532203.332001.79540HepG2HNRNPAB
FAM107BENSG00000065809.9657.546001068.61230-0.700608.080806.94230HepG2HNRNPC
FAM107BENSG00000065809.9703.361101397.22920-0.9902026.3074024.42700HepG2HNRNPF
FAM107BENSG00000065809.91037.827901347.68840-0.376905.921204.96700HepG2HNRNPL
FAM107BENSG00000065809.9701.161901234.40520-0.816006.878305.93660HepG2HNRNPLL
FAM107BENSG00000065809.9876.74450683.523800.359103.029302.03630HepG2HNRNPM
FAM107BENSG00000065809.9708.390901375.87780-0.9577018.9771017.26890HepG2IGF2BP1
FAM107BENSG00000065809.91830.07910698.300801.389906.678005.19070HepG2IGF2BP3
FAM107BENSG00000065809.91301.534001084.328000.263303.462702.64950HepG2ILF2
FAM107BENSG00000065809.9576.32420888.09210-0.623804.551402.96850HepG2KHDRBS1
FAM107BENSG00000065809.91199.80990870.771200.462304.652703.18060HepG2LARP7
FAM107BENSG00000065809.91072.13570789.432100.441502.472301.85180HepG2MAGOH
FAM107BENSG00000065809.91039.22660737.579400.494504.354402.37440HepG2MARK2
FAM107BENSG00000065809.91725.75510793.906801.1201010.550709.37830HepG2MATR3
FAM107BENSG00000065809.91034.36400696.751400.569902.977601.88430HepG2METAP2
FAM107BENSG00000065809.91033.55380801.858900.366103.253602.37880HepG2MSI2
FAM107BENSG00000065809.91408.84700713.121000.982207.778705.44660HepG2NKRF
FAM107BENSG00000065809.91943.621601466.990400.405805.047504.02070HepG2NOL12
FAM107BENSG00000065809.9665.354901094.47720-0.718007.835606.62010HepG2NSUN2
FAM107BENSG00000065809.92546.38540852.009801.579405.748804.43550HepG2PABPC1
FAM107BENSG00000065809.91407.726301050.710200.421906.064004.88690HepG2PARN
FAM107BENSG00000065809.91257.31450835.974800.588703.357101.68700HepG2PNPT1
FAM107BENSG00000065809.9594.98740946.80810-0.670209.948408.59910HepG2PPIL4
FAM107BENSG00000065809.9532.76470751.52680-0.496305.565904.50860HepG2PRPF4
FAM107BENSG00000065809.91338.96440810.894800.723408.110906.81120HepG2PRPF8
FAM107BENSG00000065809.91192.15580748.320200.6717012.1934011.20650HepG2PTBP1
FAM107BENSG00000065809.91080.353401400.33180-0.374303.490002.83040HepG2PUF60
FAM107BENSG00000065809.92199.997101485.410900.566508.974307.80100HepG2PUM2
FAM107BENSG00000065809.91051.68210810.477500.375803.413002.72920HepG2QKI
FAM107BENSG00000065809.92379.50690804.363401.5646018.4294016.76720HepG2RAVER1
FAM107BENSG00000065809.91382.37850963.349900.520906.447305.20560HepG2RBM15
FAM107BENSG00000065809.92604.548101332.656600.9666030.6170029.26070HepG2RBM22
FAM107BENSG00000065809.91041.34080735.549800.501405.000504.11770HepG2RBM25
FAM107BENSG00000065809.91830.50970832.819601.1361036.9186035.42620HepG2NELFE
FAM107BENSG00000065809.9975.59580775.638300.330803.124502.47520HepG2RECQL
FAM107BENSG00000065809.91243.152901505.07080-0.275801.953301.36710HepG2RPLP0
FAM107BENSG00000065809.9444.85570790.21550-0.828905.902804.55400HepG2RPS10
FAM107BENSG00000065809.91483.59060968.412400.615307.232405.97970HepG2RPS2
FAM107BENSG00000065809.9696.12540935.91790-0.427002.291001.56190HepG2RPS3A
FAM107BENSG00000065809.92093.91650988.479601.0828020.9852018.15730HepG2RPS5
FAM107BENSG00000065809.91284.85580802.152000.679606.497705.34960HepG2RRP9
FAM107BENSG00000065809.91302.10910875.216400.573003.458101.74690HepG2RTF1
FAM107BENSG00000065809.9547.81520945.33510-0.7871013.9706012.68740HepG2SAFB2
FAM107BENSG00000065809.9960.97560650.154700.563605.122703.85390HepG2SERBP1
FAM107BENSG00000065809.91018.17270636.273500.678205.176404.23550HepG2SF3A3
FAM107BENSG00000065809.9465.172801221.86430-1.3932020.2331018.51710HepG2SF3B1
FAM107BENSG00000065809.91081.38060779.121700.472906.043905.22700HepG2SF3B4
FAM107BENSG00000065809.9814.746601342.60610-0.7206017.6243016.13890HepG2SLBP
FAM107BENSG00000065809.91281.679901102.390500.217302.327101.72960HepG2SMN1
FAM107BENSG00000065809.91388.99240820.397100.759506.571705.03980HepG2SMNDC1
FAM107BENSG00000065809.93423.666901505.195201.1855065.9339064.32780HepG2SRFBP1
FAM107BENSG00000065809.92583.46600813.224701.6675093.8131091.97310HepG2SRSF1
FAM107BENSG00000065809.91145.942001382.56890-0.270803.060502.40590HepG2SRSF5
FAM107BENSG00000065809.9753.725701372.71140-0.8649020.8750019.29050HepG2SRSF7
FAM107BENSG00000065809.91812.27170661.593201.4537027.9084026.50200HepG2SRSF9
FAM107BENSG00000065809.91624.846801306.880700.314104.239803.63370HepG2SSB
FAM107BENSG00000065809.91343.86860751.709600.838006.961005.10420HepG2SUB1
FAM107BENSG00000065809.91862.642201572.408600.244302.633202.02300HepG2SUCLG1
FAM107BENSG00000065809.91117.66700759.143300.557902.903001.54200HepG2SUGP2
FAM107BENSG00000065809.91742.029001046.333300.735308.031206.97480HepG2SUPV3L1
FAM107BENSG00000065809.9678.163701202.94720-0.8269010.908509.61130HepG2TARDBP
FAM107BENSG00000065809.9646.457601031.37620-0.673909.371608.54730HepG2TIAL1
FAM107BENSG00000065809.91181.79850807.738900.548903.430601.80250HepG2TRA2A
FAM107BENSG00000065809.91127.383601367.99030-0.279102.254701.47180HepG2TUFM
FAM107BENSG00000065809.91936.47970847.401701.1922024.0335022.11740HepG2U2AF1
FAM107BENSG00000065809.91856.753201447.947200.358702.285601.53020HepG2UBE2L3
FAM107BENSG00000065809.9916.81150618.119700.568605.010203.98250HepG2UCHL5
FAM107BENSG00000065809.9699.81610564.276000.310502.560501.88480HepG2UPF1
FAM107BENSG00000065809.9957.78060544.788300.8139014.8563013.63350HepG2UTP3
FAM107BENSG00000065809.91499.48900884.632600.761206.321104.76540HepG2XRCC6
FAM107BENSG00000065809.9753.666801029.99950-0.450602.994102.24010HepG2XRN2
FAM107BENSG00000065809.91611.42090620.597401.3765063.7007061.98800HepG2ZNF622
FAM107BENSG00000065809.965.07800160.07410-1.298507.053505.96990K562AKAP8L
FAM107BENSG00000065809.9107.21370183.86440-0.778203.994002.54060K562CCDC124
FAM107BENSG00000065809.9317.6901019.668604.0136051.1250048.85060K562EIF2S2
FAM107BENSG00000065809.96.8072029.13050-2.097403.303402.43680K562EIF3G
FAM107BENSG00000065809.966.7387032.222801.050302.474101.81160K562G3BP2
FAM107BENSG00000065809.954.3147020.285601.420803.023201.52740K562GEMIN5
FAM107BENSG00000065809.957.1002026.201001.123802.014601.36360K562GRSF1
FAM107BENSG00000065809.9285.5798033.193803.1048034.4023032.01290K562HSPD1
FAM107BENSG00000065809.995.56590169.89540-0.830102.927802.07660K562KIF1C
FAM107BENSG00000065809.974.79610133.40150-0.834702.522501.68860K562NAA15
FAM107BENSG00000065809.955.1315019.689801.485303.022302.23830K562PRPF8
FAM107BENSG00000065809.950.5823018.732101.433002.875401.95050K562PSIP1
FAM107BENSG00000065809.915.7921041.76040-1.402902.910902.23240K562PTBP1
FAM107BENSG00000065809.985.42290158.78380-0.894403.689803.07570K562PUS1
FAM107BENSG00000065809.979.79150154.68260-0.955004.446203.71290K562RBM15
FAM107BENSG00000065809.935.76710109.67360-1.616504.277803.00030K562RPS3
FAM107BENSG00000065809.974.9825023.412801.679202.894801.89840K562SF3B1
FAM107BENSG00000065809.9207.08330105.876700.967703.363501.95480K562SNRNP200
FAM107BENSG00000065809.9119.1033030.047301.986804.221402.59290K562SSB
FAM107BENSG00000065809.973.6111032.261801.190003.594702.67750K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM107B is not available on ENCORE database.





1 RBPs can affect the splicing of FAM107B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM107BENSG00000065809.9chr10-1459532014595386145723301457251414646238146464170.491000.000100.02647includedHepG2DDX55

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM107B is not avaliable on ENCORE database.