PGC

General Information

Gene Name       : PGC
Gene ID             : ENSG00000096088.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PGC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PGCENSG00000096088.160.000.000.00ENCSR000AEF
HepG2PGCENSG00000096088.16362.99233.64298.31ENCSR985KAT
K562PGCENSG00000096088.160.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PGC is not avaliable on ENCORE database.



Proteins bound to RNA
  • PGC RNA is bound by 9 proteins.  







eCLIP assay for PGC is not avaliable on ENCORE database.





9 proteins are bound to PGC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr64170446041704496-3'-UTR,intron-Distal5.8999029.68011HepG2TIA1
chr64170447041704690-3'-UTR,CDS,intron-Distal3.4189538.01720HepG2LARP4
chr64170457141704627-3'-UTR,CDS,intron-Distal3.8912423.59258HepG2RPS3
chr64171501141715113-5'-UTR,CDS,intron-Distal4.760245.19501HepG2EIF3D
chr64171501341715114-5'-UTR,CDS,intron-Distal3.9856730.93648HepG2DDX3X
chr64171006541710074-CDS,intron-Distal6.5203012.62434HepG2RPS3
chr64171497241715026-CDS,intron-Distal3.213159.36626HepG2PRPF8
chr64170470341704735-CDS,intron-Distal4.51041400.00000HepG2SND1
chr64170753641707580-CDS,intron-Distal,intron-Proximal5.23133400.00000HepG2SND1
chr64171213741712145-CDS,intron-Distal,intron-Proximal5.1433946.14350HepG2SND1
chr64171213441712137-CDS,intron-Distal,intron-Proximal4.7126742.11069HepG2SND1
chr64170465641704739-CDS,intron-Distal3.8661933.01199HepG2RPS3
chr64171004241710066-CDS,intron-Distal5.1952374.30108HepG2SND1
chr64171246741712506-CDS,intron-Distal4.1532419.13466HepG2RPS3
chr64171214541712182-CDS,intron-Distal,intron-Proximal5.0510984.18406HepG2SND1
chr64170546741705504-CDS,intron-Distal,intron-Proximal5.124774.74159HepG2DDX55
chr64171109541711117-CDS,intron-Distal4.0969952.53997HepG2SND1
chr64171240241712447-CDS,intron-Distal4.6336920.72022HepG2RPS3
chr64170765041707682-CDS,intron-Distal5.01647400.00000HepG2SND1
chr64171009241710145-CDS,intron-Distal4.96384400.00000HepG2SND1
chr64171213541712183-CDS,intron-Distal,intron-Proximal3.4150514.43061HepG2RPS3
chr64171009441710146-CDS,intron-Distal4.1651221.82588HepG2RPS3
chr64171247041712505-CDS,intron-Distal4.3748054.36624HepG2SND1
chr64170763741707680-CDS,intron-Distal5.0250428.85977HepG2RPS3
chr64170467941704703-CDS,intron-Distal4.97341400.00000HepG2SND1
chr64171218241712192-CDS,intron-Distal,intron-Proximal4.4513940.34785HepG2SND1
chr64170824841708303-CDS,intron-Distal,intron-Proximal4.99657400.00000HepG2SND1
chr64170831841708339-CDS,intron-Distal,intron-Proximal4.7315543.40865HepG2SND1
chr64171112041711126-CDS,intron-Distal4.2489331.42185HepG2SND1
chr64171501541715052-CDS,intron-Distal5.1749720.31541HepG2RPS3
chr64170763241707650-CDS,intron-Distal5.14872400.00000HepG2SND1
chr64170758641707632-CDS,intron-Distal5.14940400.00000HepG2SND1
chr64170830341708318-CDS,intron-Distal,intron-Proximal4.8155851.42110HepG2SND1
chr64170464741704679-CDS,intron-Distal5.07403400.00000HepG2SND1
chr64171239541712437-CDS,intron-Distal,intron-Proximal4.76415400.00000HepG2SND1
chr64170979641709864-intron-Distal3.696447.58507HepG2HNRNPK
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PGC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PGC is not available on ENCORE database.

  • 158 RBPs can affect the levels of PGC.  








The Knockdown/knockout RNA-Seq assay for PGC is not available on ENCORE database.





158 RBPs can affect the gene expression of PGC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PGCENSG00000096088.125119.229303834.114000.416904.167203.02780HepG2ABCF1
PGCENSG00000096088.122357.581703449.36050-0.5490016.6721015.44620HepG2ACO1
PGCENSG00000096088.1214962.508904660.536401.6827011.660609.81010HepG2ADAR
PGCENSG00000096088.12944.988302428.58670-1.3617024.1152022.71340HepG2AKAP1
PGCENSG00000096088.123453.397202209.351700.644306.997605.39200HepG2AKAP8
PGCENSG00000096088.122390.631503465.79300-0.5358013.6157012.09140HepG2AKAP8L
PGCENSG00000096088.121368.329002821.01800-1.043805.865803.23840HepG2APOBEC3C
PGCENSG00000096088.121516.762302009.42480-0.405803.252202.40080HepG2ASCC1
PGCENSG00000096088.122748.798204142.51090-0.591709.366608.22610HepG2AUH
PGCENSG00000096088.121568.266004840.19890-1.6259030.7763027.54750HepG2BCCIP
PGCENSG00000096088.12761.495801747.84120-1.198707.416806.49390HepG2BOP1
PGCENSG00000096088.12865.756503806.25140-2.1363073.3054070.45850HepG2CALR
PGCENSG00000096088.122324.964401909.100600.284201.980801.31940HepG2CIRBP
PGCENSG00000096088.124804.821703448.883100.478304.881604.04530HepG2CKAP4
PGCENSG00000096088.12909.329203020.49040-1.7319025.9153023.66020HepG2CNOT7
PGCENSG00000096088.12494.024101604.52910-1.6995011.3598010.07310HepG2CPSF6
PGCENSG00000096088.127544.987004779.286400.6586012.3189010.26260HepG2YBX3
PGCENSG00000096088.121215.139702989.08010-1.2986025.2212022.66250HepG2CSTF2
PGCENSG00000096088.124993.828806176.82550-0.306703.455602.75430HepG2CELF1
PGCENSG00000096088.122505.231306641.45700-1.40660127.36640124.18500HepG2DAZAP1
PGCENSG00000096088.122287.789804786.01930-1.0649043.3749040.09860HepG2DDX1
PGCENSG00000096088.122642.426303865.18150-0.548709.387507.73920HepG2DDX24
PGCENSG00000096088.122722.555604452.36770-0.709608.657706.53580HepG2DDX27
PGCENSG00000096088.122270.199103604.37860-0.666909.094506.80300HepG2DDX28
PGCENSG00000096088.12283.428602326.34490-3.03700108.36160104.98620HepG2DDX3X
PGCENSG00000096088.121389.630603541.28180-1.3496034.5450031.02480HepG2DDX47
PGCENSG00000096088.12319.106701822.08850-2.5135016.4873014.29510HepG2DDX59
PGCENSG00000096088.128756.655101998.513802.1314026.0325024.42460HepG2DDX6
PGCENSG00000096088.121834.037504526.35670-1.3033039.7313036.94160HepG2DHX30
PGCENSG00000096088.125909.043003300.173700.8403037.2483035.51080HepG2DKC1
PGCENSG00000096088.12623.429004692.99240-2.91220251.01420247.12850HepG2DNAJC21
PGCENSG00000096088.1213315.547804083.410601.7052063.0602060.15310HepG2EEF2
PGCENSG00000096088.124695.738603637.133700.368502.353001.33750HepG2AGO1
PGCENSG00000096088.121570.185601921.08540-0.291001.836001.34010HepG2EIF2S1
PGCENSG00000096088.121766.743002908.92310-0.7194013.5403011.21750HepG2EIF2S2
PGCENSG00000096088.126396.488003729.787500.7781019.4647017.15280HepG2EIF3G
PGCENSG00000096088.12310.72270536.23890-0.787205.068802.56880HepG2EIF3H
PGCENSG00000096088.121303.501102122.96010-0.703707.546006.49120HepG2EIF4A3
PGCENSG00000096088.121544.845602067.12370-0.420202.454201.80510HepG2EIF4B
PGCENSG00000096088.122685.392306552.33160-1.2869027.0037024.97140HepG2EIF4G1
PGCENSG00000096088.121320.835106276.69160-2.24860101.3904097.48530HepG2EIF4G2
PGCENSG00000096088.12891.712704756.36150-2.41520151.60380148.34390HepG2ETF1
PGCENSG00000096088.121409.593103370.88320-1.2578038.8582036.19040HepG2EWSR1
PGCENSG00000096088.122189.594403533.56040-0.690509.481706.53500HepG2EXOSC9
PGCENSG00000096088.12911.205203763.77760-2.0463091.7420088.33370HepG2FASTKD2
PGCENSG00000096088.122854.927803871.65010-0.439503.267902.43750HepG2FIP1L1
PGCENSG00000096088.123035.266103960.99700-0.384003.631602.18710HepG2FKBP4
PGCENSG00000096088.1210332.850306213.587800.733609.768206.82080HepG2FMR1
PGCENSG00000096088.12174.117001607.45470-3.2066020.9980018.43140HepG2FTO
PGCENSG00000096088.123231.915601698.611100.9279010.819109.31250HepG2FUBP3
PGCENSG00000096088.129064.647504355.365301.0574013.5828011.38200HepG2FUS
PGCENSG00000096088.126392.953002142.174601.5773045.0911042.72400HepG2FXR1
PGCENSG00000096088.124225.614202109.672801.0020019.2964017.01900HepG2G3BP2
PGCENSG00000096088.125276.937802950.919600.8384014.3548012.45610HepG2GEMIN5
PGCENSG00000096088.122929.667704169.51670-0.509105.260703.85060HepG2GNB2L1
PGCENSG00000096088.123173.845301818.627700.803307.165806.16700HepG2GPKOW
PGCENSG00000096088.126668.516003870.292700.7848010.793807.73230HepG2GRWD1
PGCENSG00000096088.121430.983103293.31700-1.2025027.7543025.20790HepG2HDGF
PGCENSG00000096088.1223552.248704737.951002.31340145.10190142.16580HepG2HNRNPA1
PGCENSG00000096088.123307.096402495.559000.406102.729701.33820HepG2HNRNPAB
PGCENSG00000096088.123231.718305270.05060-0.7055013.3106011.89420HepG2HNRNPC
PGCENSG00000096088.121756.774202616.45030-0.574704.374202.46680HepG2HNRNPD
PGCENSG00000096088.126245.843202012.337701.6339056.7341053.98050HepG2HNRNPK
PGCENSG00000096088.124242.358206049.81450-0.5120021.0688019.37920HepG2HNRNPL
PGCENSG00000096088.121035.087801735.57090-0.745703.119902.45640HepG2HNRNPLL
PGCENSG00000096088.123926.928702671.591700.555609.463807.88560HepG2HNRNPM
PGCENSG00000096088.124218.944705235.21140-0.311406.247205.36640HepG2HNRNPU
PGCENSG00000096088.124691.431403379.165900.473307.321206.19530HepG2IGF2BP1
PGCENSG00000096088.12576.953002019.78400-1.8077045.2909042.95720HepG2IGF2BP2
PGCENSG00000096088.12459.186001895.62850-2.0455015.6091013.53390HepG2IGF2BP3
PGCENSG00000096088.123009.856305347.60270-0.8292052.2616049.70350HepG2ILF2
PGCENSG00000096088.121862.562402944.93100-0.660903.493501.97930HepG2ILF3
PGCENSG00000096088.124973.182802879.733100.788109.169506.86190HepG2KHDRBS1
PGCENSG00000096088.122857.110402031.626500.491803.544302.39140HepG2KHSRP
PGCENSG00000096088.124281.879003153.317400.4413013.9192011.86760HepG2KIF1C
PGCENSG00000096088.1213544.399406278.036001.1092013.6174011.81190HepG2LARP4
PGCENSG00000096088.121772.931304289.30420-1.2746034.7822031.41070HepG2LIN28B
PGCENSG00000096088.122317.731004098.13360-0.8223012.025408.89080HepG2LSM11
PGCENSG00000096088.125618.815202142.923301.3906033.8175031.73440HepG2MAGOH
PGCENSG00000096088.121199.566702154.88500-0.8451010.459609.29390HepG2MATR3
PGCENSG00000096088.121988.034203468.52020-0.803006.156204.63820HepG2METAP2
PGCENSG00000096088.122012.337603133.96760-0.6391010.590509.11620HepG2MSI2
PGCENSG00000096088.121013.584502205.61860-1.1217018.6950017.14190HepG2NCBP2
PGCENSG00000096088.122829.133103693.18800-0.384503.641202.00960HepG2NIP7
PGCENSG00000096088.121044.804402279.12030-1.125204.353702.55660HepG2NKRF
PGCENSG00000096088.125165.720706585.66300-0.350404.528403.55480HepG2NOL12
PGCENSG00000096088.126753.813504371.394800.627503.257102.06140HepG2NONO
PGCENSG00000096088.12527.621201539.08320-1.544509.903708.55440HepG2NSUN2
PGCENSG00000096088.123208.616601322.189101.278904.926102.37520HepG2NUFIP2
PGCENSG00000096088.12866.920502761.23960-1.6713020.2057017.82180HepG2PABPC1
PGCENSG00000096088.12987.158901964.12760-0.9925015.0626013.42130HepG2PABPC4
PGCENSG00000096088.123404.760205182.01800-0.6060019.2977017.44550HepG2PARN
PGCENSG00000096088.124425.217502120.377001.0613021.4804020.04730HepG2PCBP1
PGCENSG00000096088.127291.697004122.538200.822607.957806.29470HepG2PCBP2
PGCENSG00000096088.122116.523703919.90190-0.8891010.560207.61100HepG2PHF6
PGCENSG00000096088.121179.012902709.07070-1.2002011.772908.91890HepG2PNPT1
PGCENSG00000096088.122536.308504669.39790-0.8805030.6199028.40110HepG2PPIL4
PGCENSG00000096088.121608.461302705.05410-0.7500022.6452020.81430HepG2PRPF4
PGCENSG00000096088.125102.944302157.408101.2419025.5195024.17930HepG2PTBP1
PGCENSG00000096088.124184.372806673.58500-0.6735036.7565035.09860HepG2PUM1
PGCENSG00000096088.123084.726506668.68090-1.1123042.5893040.25710HepG2PUM2
PGCENSG00000096088.1212950.004203513.437301.8819088.5090086.08840HepG2PUS1
PGCENSG00000096088.121141.803902336.85620-1.0333011.8294010.67060HepG2QKI
PGCENSG00000096088.121184.30720671.863800.817708.430305.35580HepG2RBM14
PGCENSG00000096088.121083.252003565.94130-1.7189012.2982010.69380HepG2RBM15
PGCENSG00000096088.12418.260803975.39540-3.24860270.17310266.76410HepG2RBM22
PGCENSG00000096088.121298.558802120.72250-0.707607.734006.65660HepG2RBM25
PGCENSG00000096088.122525.212604924.94370-0.9637018.8918016.34010HepG2RBM27
PGCENSG00000096088.121679.725702917.80890-0.796707.592805.16650HepG2RBM47
PGCENSG00000096088.127459.193903999.262200.8992016.3063013.85730HepG2RCC2
PGCENSG00000096088.124228.432502401.116700.8163026.7062025.37680HepG2NELFE
PGCENSG00000096088.125076.070602236.080501.1826010.860709.76360HepG2RECQL
PGCENSG00000096088.121430.946703697.12000-1.3694041.5152039.61020HepG2RPLP0
PGCENSG00000096088.121580.356603909.08080-1.3066011.114709.35380HepG2RPS10
PGCENSG00000096088.125100.819503225.479400.6611012.7844011.58020HepG2RPS19
PGCENSG00000096088.123397.456404542.27620-0.419004.095803.13100HepG2RPS2
PGCENSG00000096088.122879.002104636.49190-0.6875010.100908.06930HepG2RPS5
PGCENSG00000096088.121851.184903630.25300-0.9716016.2790014.65960HepG2RRP9
PGCENSG00000096088.121716.289704330.02150-1.335109.698707.00160HepG2RTF1
PGCENSG00000096088.122182.048904662.21320-1.0953068.7563066.28660HepG2SAFB2
PGCENSG00000096088.121328.612002857.55790-1.1049011.897509.36480HepG2SART3
PGCENSG00000096088.122110.492203236.60160-0.616905.605404.28070HepG2SERBP1
PGCENSG00000096088.124729.799301285.324601.879509.793807.02960HepG2SF1
PGCENSG00000096088.122561.544401730.994900.565302.149401.55410HepG2SF3A3
PGCENSG00000096088.12732.510001717.73890-1.229606.845405.77700HepG2SF3B1
PGCENSG00000096088.123543.613706027.99740-0.7665010.817709.58000HepG2SLBP
PGCENSG00000096088.123845.154801911.333601.0084010.596009.07650HepG2SNRNP70
PGCENSG00000096088.1297.078304489.98740-5.5314099999.9999999999.99999HepG2SRFBP1
PGCENSG00000096088.122789.236102344.660600.250402.021101.59920HepG2SRSF1
PGCENSG00000096088.122403.407503371.57090-0.488304.086203.26640HepG2SRSF7
PGCENSG00000096088.12683.391301907.40870-1.4808022.4828021.18820HepG2SRSF9
PGCENSG00000096088.121376.120903898.24040-1.50220100.5762098.66690HepG2SSB
PGCENSG00000096088.121380.667002396.91860-0.795803.471902.05160HepG2SSRP1
PGCENSG00000096088.12426.569602586.46950-2.6001068.3320064.44430HepG2STAU1
PGCENSG00000096088.124560.691602640.302000.788406.098704.41070HepG2STIP1
PGCENSG00000096088.122604.098807059.23690-1.43870136.02580133.06430HepG2SUCLG1
PGCENSG00000096088.12660.241602425.92720-1.8775016.7877013.44360HepG2SUGP2
PGCENSG00000096088.12936.538702614.75860-1.4813047.7700044.58500HepG2SUPT6H
PGCENSG00000096088.122134.444504737.29480-1.1502013.8754012.55330HepG2SUPV3L1
PGCENSG00000096088.128928.107702107.157902.0830047.1294045.18440HepG2TAF15
PGCENSG00000096088.123211.682101692.256800.9243016.1272014.62500HepG2TARDBP
PGCENSG00000096088.1210023.594402354.285502.0899024.4242021.75340HepG2TBRG4
PGCENSG00000096088.121736.309903175.00940-0.8707013.9245012.03630HepG2TFIP11
PGCENSG00000096088.121092.016305087.15090-2.21990138.69300136.16640HepG2TIAL1
PGCENSG00000096088.126551.812005132.449400.352107.961107.08270HepG2TRIM56
PGCENSG00000096088.1210630.193006141.850700.7913020.9658018.41720HepG2TUFM
PGCENSG00000096088.121560.930003312.23390-1.0854023.2621021.37750HepG2U2AF1
PGCENSG00000096088.121677.767406501.10310-1.9541061.9819058.71730HepG2UBE2L3
PGCENSG00000096088.12241.694001535.13270-2.6671076.3389073.81680HepG2UPF1
PGCENSG00000096088.122526.067104336.90260-0.779808.871707.03620HepG2UPF2
PGCENSG00000096088.12949.267701577.86520-0.7331016.1007013.88850HepG2UTP18
PGCENSG00000096088.12400.635301482.10290-1.8873030.2837028.62120HepG2UTP3
PGCENSG00000096088.12829.668302718.18300-1.7120021.8289018.91090HepG2XPO5
PGCENSG00000096088.122931.808904663.35880-0.669609.700608.36070HepG2XRN2
PGCENSG00000096088.12620.284702669.59230-2.10560164.31130160.98750HepG2ZC3H8
PGCENSG00000096088.121045.615401688.34530-0.691303.522802.92610HepG2ZNF622
PGCENSG00000096088.122681.427703975.75720-0.568203.511402.04320HepG2ZRANB2
PGCENSG00000096088.1214.545201.253103.536902.687402.10670K562AQR
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PGC is not available on ENCORE database.





11 RBPs can affect the splicing of PGC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEPGCENSG00000096088.12chr6-417121344171225241710027417102274171239541712546-0.102000.000020.00074excludedHepG2U2AF1
SEPGCENSG00000096088.12chr6-417121344171225241710027417102274171239541712546-0.149000.000000.00046excludedHepG2DKC1
SEPGCENSG00000096088.12chr6-417121344171225241710027417102274171239541712546-0.100000.000090.01328excludedHepG2SRSF7
SEPGCENSG00000096088.12chr6-417121344171225241710027417102274171239541712546-0.435000.000000.00000excludedHepG2DDX3X
SEPGCENSG00000096088.12chr6-4171213441712252417100274171022741712395417125460.096000.000010.00659includedHepG2FAM120A
SEPGCENSG00000096088.12chr6-4171213441712252417100274171022741712395417125460.155000.000020.00656includedHepG2TIA1
SEPGCENSG00000096088.12chr6-4171213441712252417100274171022741712395417125460.063000.000000.00094includedHepG2HNRNPA1
SEPGCENSG00000096088.12chr6-417121344171225241710027417102274171239541712546-0.058000.000010.00430excludedHepG2LARP4
SEPGCENSG00000096088.12chr6-417121344171225241710027417102274171239541712546-0.172000.000000.00000excludedHepG2HNRNPL
SEPGCENSG00000096088.12chr6-417121344171225241710027417102274171239541712546-0.149000.000010.00823excludedHepG2BCCIP
SEPGCENSG00000096088.12chr6-4171213441712252417100274171022741712395417125460.076000.000340.06961includedHepG2FUS

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for PGC is not avaliable on ENCORE database.