EXOSC9

General Information

Gene Name       : EXOSC9
Gene ID             : ENSG00000123737.12
Essential Gene : Yes

Functions

Localization(RBPImage: EXOSC9)

Domains (AlphaFold: EXOSC9)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878EXOSC9ENSG00000123737.1277.7869.1573.47ENCSR000AEF
HepG2EXOSC9ENSG00000123737.1228.6748.6538.66ENCSR985KAT
K562EXOSC9ENSG00000123737.1287.3387.4187.37ENCSR000AEO

Assays

2 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
knockdown followed by RNA-seq EXOSC9-BGKLV13-K562ENCSR812EIAEXOSC9K562ReleasedENCSR815CVQ   shRNAKD% = 31.8,20.5
knockdown followed by RNA-seq EXOSC9-BGHLV14-HepG2ENCSR597IYBEXOSC9HepG2ReleasedENCSR003EKR   shRNAKD% = 52.2,59.6






  eCLIP  

No eCLIP experiment available



  Antibody Validation  
  GeneName    Antibody_DCC_ID    Product_ID    Lot_ID    Phosphate    HepG2 Primary Validation    K562 Primary Validation    HepG2 Secondary Validation    K562 Secondary Validation  
EXOSC9ENCAB573YWTA303-888A1Released, ENCODE3BGHcLV41-59, Submitted, ENCORE2BGKcLV40-39, Submitted, ENCORE2


  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
EXOSC9K562shRNAENCSR812EIAENCSR815CVQEXOSC9_BGKLV13_7,EXOSC9_BGKLV13_8NT_BGKLV13_1,NT_BGKLV13_231.8,20.5ReleasedENCODE3
EXOSC9HepG2shRNAENCSR597IYBENCSR003EKREXOSC9_BGHLV14-17,EXOSC9_BGHLV14-18NT_BGHLV14-1_1,NT_BGHLV14-2_152.2,59.6ReleasedENCODE3
EXOSC9K562CRISPREXOSC9-BGKcLV40-39,EXOSC9-BGKcLV40-40NT-BGKcLV40-1,NT-BGKcLV40-271.6,71.0SubmittingENCORE2
EXOSC9HepG2CRISPREXOSC9-BGHcLV41-59,EXOSC9-BGHcLV41-60NT-BGHcLV41-1,NT-BGHcLV41-269.0,63.1SubmittingENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    EXOSC9: Click to RBP Image Database
  • Nuclei
  • Nucleolus
  • Cytoplasm
  • Compartment/Organelle
  • Mitochondria
  • Nuclear release mitosis












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela
    EXOSC9Product_ID: A303-888A
    Lot_ID: 1
    Source: Bethyl Labs
    Target Name: EXOSC9-human    		 EXOSC9-HEPG2-CRISPR-A303-888A.png<br>Caption: Western blot following CRISPR against EXOSC9 in HepG2 whole cell lysate using EXOSC9 specific antibody. Lane 1 is a ladder, lane 2 is HepG2 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against EXOSC9. EXOSC9 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.
    		 K562_Bethyl_A303-888A_1_EXOSC9.png<br>Caption: IP-Western Blot analysis of K562 whole cell lysate using PRPF8 specific antibody. Lane 1 is 1% of twenty million whole cell lysate input and lane 2 is 25% of IP enrichment using rabbit normal IgG (lanes under 'IgG'). Lane 3 is 1% of twenty million whole cell lysate input and lane 4 is 10% IP enrichment using rabbit polyclonal anti-PRPF8 antibody (lanes under 'PRPF8').
    		 EXOSC9_Secondary_Western.png<br>Caption: Western blot following shRNA against EXOSC9 in K562 and HepG2 whole cell lysate using EXOSC9 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different shRNAs against EXOSC9. Lanes 5-7 follow the same pattern, but in HepG2. EXOSC9 protein appears as the green band, GAPDH serves as a control and appears in red.
    EXOSC9-K562-CRISPR-A303-888A.png<br>Caption: Western blot following CRISPR against EXOSC9 in K562 whole cell lysate using EXOSC9 specific antibody. Lane 1 is a ladder, lane 2 is K562 non-targeting control knockdown, lane 3 and 4 are two different CRISPR against EXOSC9. EXOSC9 protein appears as the green arrow, Beta-actin serves as a control and appears in red arrow.








    RNA Targets

    • eCLIP assay for EXOSC9 is not avaliable on ENCORE database.



    Proteins bound to RNA
    • EXOSC9 RNA is bound by 11 proteins.  







    eCLIP assay for EXOSC9 is not avaliable on ENCORE database.





    11 proteins are bound to EXOSC9 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr4122737924122738037+3'-UTR,CDS,intron-Proximal3.039726.45091K562UCHL5
    chr4122734394122734421+3'-UTR,CDS,intron-Distal4.428103.87995K562UCHL5
    chr4122735234122735304+3'-UTR,intron-Distal,intron-Proximal4.651656.94732K562KHSRP
    chr4122737922122737963+3'-UTR,CDS,intron-Proximal3.145963.55800HepG2BCLAF1
    chr4122737924122737958+3'-UTR,CDS,intron-Proximal3.539086.14048K562ZNF622
    chr4122734488122734537+3'-UTR,CDS,intron-Distal,intron-Proximal4.258643.49905HepG2PPIG
    chr4122735104122735156+3'-UTR,CDS3.439286.02234K562UCHL5
    chr4122734310122734412+3'-UTR,CDS,intron-Distal,intron-Proximal4.657735.28637K562U2AF2
    chr4122735156122735219+3'-UTR,CDS,intron-Proximal4.7273110.74095K562UCHL5
    chr4122734479122734536+3'-UTR,CDS,intron-Distal,intron-Proximal3.323366.62505K562UCHL5
    chr4122728714122728765+3'-UTR,CDS3.076134.00731K562UCHL5
    chr4122734342122734414+3'-UTR,CDS,intron-Distal,intron-Proximal4.968445.13577HepG2U2AF2
    chr4122735150122735221+3'-UTR,CDS,intron-Proximal3.683656.18214HepG2GRWD1
    chr4122731208122731254+3'-UTR,CDS,intron-Distal,intron-Proximal3.579386.43326K562UCHL5
    chr4122735020122735085+3'-UTR,CDS,intron-Proximal3.460614.24070HepG2GRWD1
    chr4122735089122735213+3'-UTR,CDS,intron-Proximal3.5047610.77572K562GRWD1
    chr4122731131122731256+3'-UTR,CDS,intron-Distal,intron-Proximal3.035694.05271HepG2PPIG
    chr4122731130122731251+3'-UTR,CDS,intron-Distal,intron-Proximal4.3460911.55759HepG2BCLAF1
    chr4122734454122734526+3'-UTR,CDS,intron-Distal4.665304.78529HepG2BCLAF1
    chr4122731123122731257+3'-UTR,CDS,intron-Distal,intron-Proximal3.384155.96568HepG2GRWD1
    chr4122735045122735151+3'-UTR,CDS3.4223412.51870K562ZNF622
    chr4122737958122738004+3'-UTR,CDS3.204154.74755K562ZNF622
    chr4122737588122737602+3'-UTR,CDS3.702103.61259K562ZNF622
    chr4122735029122735229+3'-UTR,CDS,intron-Proximal3.2611312.32425HepG2BCLAF1
    chr4122735085122735150+3'-UTR,CDS4.567326.26332HepG2GRWD1
    chr4122725811122725915+5'-UTR,CDS,intron-Distal,intron-Proximal3.145335.54400K562YBX3
    chr4122722523122722642+5'-UTR,CDS3.478054.93097K562YBX3
    chr4122722504122722595+5'-UTR,CDS4.6048614.30286K562DDX3X
    chr4122725855122725911+5'-UTR,CDS,intron-Distal4.270004.08604HepG2PPIG
    chr4122722492122722596+5'-UTR,CDS3.279623.28035HepG2NCBP2
    chr4122723028122723093+CDS,intron-Proximal3.398436.37739K562BUD13
    chr4122724067122724113+CDS,intron-Distal,intron-Proximal3.800333.67596K562GRWD1
    chr4122724072122724131+CDS,intron-Distal4.767145.14565K562UCHL5
    chr4122723904122723948+CDS,intron-Proximal3.492743.73423K562UCHL5
    chr4122723900122723947+CDS,intron-Proximal3.031183.17744HepG2GRWD1
    chr4122723030122723077+CDS,intron-Proximal3.357203.84771K562ZNF622
    chr4122723900122723950+CDS,intron-Proximal4.081073.84295K562GRWD1
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for EXOSC9 is not avaliable on ENCORE database.



    Diffrential Expression
    • 310 differentially expressed genes after Knockdown/Knockout EXOSC9 protein.  





    • 88 RBPs can affect the levels of EXOSC9.  







    310 differentially expressed genes after Knockdown/Knockout EXOSC9 protein :

    Only display 100 entries as example. Please click "View All" button to see all 310 entries.     

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    ZFXENSG00000005889.111043.37010689.149400.598305.507103.13230HepG2EXOSC9
    SYNRGENSG00000006114.11413.85250649.47240-0.650204.232402.10640HepG2EXOSC9
    CX3CL1ENSG00000006210.62178.978801626.819500.421503.692101.70180HepG2EXOSC9
    MAPK8IP2ENSG00000008735.10136.4736036.421101.905708.704705.88710HepG2EXOSC9
    CYP24A1ENSG00000019186.5120.77200253.67490-1.070707.004804.38350HepG2EXOSC9
    FNIP2ENSG00000052795.81385.38340964.052900.523004.791902.57010HepG2EXOSC9
    MSMO1ENSG00000052802.81974.926602850.88690-0.529605.820803.37300HepG2EXOSC9
    RC3H2ENSG00000056586.11680.154201054.00280-0.631906.133503.63280HepG2EXOSC9
    DCBLD2ENSG00000057019.111612.565602424.04260-0.588103.666601.68700HepG2EXOSC9
    NDC1ENSG00000058804.10937.741901266.89900-0.434003.413701.47370HepG2EXOSC9
    ACSM2BENSG00000066813.10505.92330322.142200.651104.048101.98870HepG2EXOSC9
    KLF6ENSG00000067082.10984.140101568.35530-0.672307.723205.01480HepG2EXOSC9
    JMJD6ENSG00000070495.10378.09020595.38430-0.655105.085302.80290HepG2EXOSC9
    ASNSENSG00000070669.12589.27770262.441001.1669013.4303010.24480HepG2EXOSC9
    EDN1ENSG00000078401.647.61720105.46480-1.147204.037101.98080HepG2EXOSC9
    FDFT1ENSG00000079459.84489.516705813.70100-0.372903.395701.46380HepG2EXOSC9
    AFPENSG00000081051.3157054.70450117202.221000.422204.484902.32470HepG2EXOSC9
    CDC14BENSG00000081377.121662.298101246.993000.414603.313501.40670HepG2EXOSC9
    ZMPSTE24ENSG00000084073.4421.93440689.23350-0.708004.304402.16810HepG2EXOSC9
    HSD17B2ENSG00000086696.6362.63140575.17290-0.665505.197002.88070HepG2EXOSC9
    SLC6A14ENSG00000087916.7539.66350822.65810-0.608203.208801.32280HepG2EXOSC9
    PLK1S1ENSG00000088970.112102.518501477.523300.508805.017802.73890HepG2EXOSC9
    CHGBENSG00000089199.5108.1372050.307801.103903.991401.94370HepG2EXOSC9
    PHGDHENSG00000092621.71610.637901176.559300.453003.866801.83970HepG2EXOSC9
    BTAF1ENSG00000095564.93023.727002236.327300.435104.095102.01680HepG2EXOSC9
    IL11ENSG00000095752.221.4472070.43420-1.715505.222702.88670HepG2EXOSC9
    PGCENSG00000096088.122189.594403533.56040-0.690509.481706.53500HepG2EXOSC9
    HSD17B7P2ENSG00000099251.1087.32280213.96470-1.292908.298105.52750HepG2EXOSC9
    SRSF5ENSG00000100650.115816.692903982.344700.546506.545703.96220HepG2EXOSC9
    CCNB1IP1ENSG00000100814.131288.32350883.190600.544604.967302.69910HepG2EXOSC9
    NFKBIAENSG00000100906.61483.487901034.131100.520504.801402.57650HepG2EXOSC9
    PNNENSG00000100941.414572.287408901.205200.7111011.213008.17360HepG2EXOSC9
    DIDO1ENSG00000101191.123969.426702876.695500.464404.782302.56370HepG2EXOSC9
    EEF1A2ENSG00000101210.668.72390144.58170-1.073004.635802.44450HepG2EXOSC9
    RNF125ENSG00000101695.4106.0433049.629501.095303.753401.75540HepG2EXOSC9
    SYPENSG00000102003.6269.3931070.790301.9280017.9452014.62500HepG2EXOSC9
    NDRG4ENSG00000103034.1096.25720178.39140-0.890104.107202.02430HepG2EXOSC9
    KIAA1199ENSG00000103888.11882.941201259.82870-0.512804.530802.35950HepG2EXOSC9
    BMFENSG00000104081.9796.95700577.190700.465403.278501.38080HepG2EXOSC9
    HAMPENSG00000105697.370.40340236.49900-1.748107.508904.83750HepG2EXOSC9
    GRB10ENSG00000106070.13302.30640555.58910-0.878008.102005.34240HepG2EXOSC9
    DNAJC12ENSG00000108176.10450.14960292.418600.622303.988701.94310HepG2EXOSC9
    CCDC47ENSG00000108588.91851.770902512.12860-0.440004.090002.01390HepG2EXOSC9
    COL1A1ENSG00000108821.910.4194050.95200-2.289905.742403.31020HepG2EXOSC9
    ABCC3ENSG00000108846.11885.619601291.02840-0.543803.628901.66000HepG2EXOSC9
    LUC7L3ENSG00000108848.115969.288604249.686500.490105.465203.09480HepG2EXOSC9
    UGT2B10ENSG00000109181.74019.263902505.108400.682009.305906.42140HepG2EXOSC9
    ODAMENSG00000109205.121293.43590695.727700.8945011.660708.57790HepG2EXOSC9
    HSPA8ENSG00000109971.98671.1397012688.65470-0.549204.160802.05500HepG2EXOSC9
    ARPC3ENSG00000111229.111979.943301206.654800.714308.859906.00970HepG2EXOSC9
    RFC5ENSG00000111445.9298.02270450.54780-0.596303.870401.84120HepG2EXOSC9
    NEDD9ENSG00000111859.125098.366706656.92920-0.384803.562401.60390HepG2EXOSC9
    RNGTTENSG00000111880.11362.46200561.40460-0.631204.691402.48810HepG2EXOSC9
    SOBPENSG00000112320.7438.97580295.402900.571403.474401.53110HepG2EXOSC9
    BTN2A1ENSG00000112763.11496.67100691.03120-0.476503.274601.37840HepG2EXOSC9
    HMGCS1ENSG00000112972.103653.801105259.80720-0.525606.152503.64220HepG2EXOSC9
    ARRDC3ENSG00000113369.4439.31680245.400500.840006.624604.03380HepG2EXOSC9
    SMAD5ENSG00000113658.12782.814101151.20980-0.556405.103002.81690HepG2EXOSC9
    AMOTL2ENSG00000114019.10428.06880257.879900.731005.142502.84160HepG2EXOSC9
    RBP1ENSG00000114115.5128.12380260.98270-1.026406.743004.14480HepG2EXOSC9
    HES1ENSG00000114315.3101.85610175.66150-0.786303.395901.46380HepG2EXOSC9
    NKTRENSG00000114857.134153.300203212.079900.370703.262101.36740HepG2EXOSC9
    CCL20ENSG00000115009.71862.430202935.26050-0.656308.400705.61880HepG2EXOSC9
    OTX1ENSG00000115507.5264.25720155.179000.767904.257102.12330HepG2EXOSC9
    ID2ENSG00000115738.51531.495102085.93050-0.445803.964001.92250HepG2EXOSC9
    ERRFI1ENSG00000116285.84480.6772010541.06680-1.2342030.8252027.06570HepG2EXOSC9
    PARK7ENSG00000116288.81042.932701662.23940-0.672507.777905.05980HepG2EXOSC9
    TXNIPENSG00000117289.77153.783004291.938800.7370011.449508.38890HepG2EXOSC9
    SLC2A1ENSG00000117394.157265.606609293.32790-0.355103.190101.30850HepG2EXOSC9
    SGK1ENSG00000118515.73310.03660985.111801.7484050.1455046.08490HepG2EXOSC9
    FAM47E-STBD1ENSG00000118804.7144.58020239.90690-0.730603.668201.68700HepG2EXOSC9
    CCND2ENSG00000118971.349.46740107.53330-1.120204.047101.98870HepG2EXOSC9
    SLC17A5ENSG00000119899.11263.91590400.03690-0.600103.654201.67640HepG2EXOSC9
    PPP1R3CENSG00000119938.8243.39420569.96750-1.2276014.3473011.13180HepG2EXOSC9
    ACAT2ENSG00000120437.72627.255603750.83060-0.513705.679503.26730HepG2EXOSC9
    ARL4AENSG00000122644.8690.08620220.221001.6477025.4871022.02860HepG2EXOSC9
    EXOSC9ENSG00000123737.8210.82110473.25190-1.1666011.955808.82460HepG2EXOSC9
    C4BPAENSG00000123838.6596.87270905.72520-0.601705.260902.91630HepG2EXOSC9
    SRSF6ENSG00000124193.105282.388304069.869500.376103.357001.43790HepG2EXOSC9
    SOX4ENSG00000124766.4455.99250797.36040-0.806208.422105.62870HepG2EXOSC9
    MT1GENSG00000125144.938.5612095.17270-1.303404.521502.35300HepG2EXOSC9
    INSIG2ENSG00000125629.102879.336404095.01600-0.508105.630703.23760HepG2EXOSC9
    COX7CENSG00000127184.61594.182301070.568700.574305.780003.33750HepG2EXOSC9
    ATF4ENSG00000128272.105100.757003590.700100.506305.622103.23370HepG2EXOSC9
    HOXD1ENSG00000128645.1196.11130206.53780-1.103606.449303.88000HepG2EXOSC9
    HEATR5AENSG00000129493.10878.244301215.67540-0.469103.240401.35010HepG2EXOSC9
    FOXA1ENSG00000129514.41278.14530779.675700.713007.837705.10950HepG2EXOSC9
    SAT1ENSG00000130066.123895.955305229.86590-0.424804.130402.04060HepG2EXOSC9
    UNC13AENSG00000130477.1084.1822032.436401.375804.485602.32470HepG2EXOSC9
    GDF15ENSG00000130513.6584.261001398.27400-1.259005.556903.17760HepG2EXOSC9
    HABP4ENSG00000130956.9807.79020588.076200.457903.191101.30850HepG2EXOSC9
    AKAP12ENSG00000131016.122025.879003088.72510-0.608507.519904.83950HepG2EXOSC9
    ACLYENSG00000131473.123112.091606901.10730-1.1489026.2082022.69170HepG2EXOSC9
    GCH1ENSG00000131979.14183.99390287.23040-0.642603.331801.41730HepG2EXOSC9
    LGALS3ENSG00000131981.11192.14880346.05010-0.848804.244702.11610HepG2EXOSC9
    HSD17B7ENSG00000132196.9350.16770518.48970-0.566303.779501.77010HepG2EXOSC9
    EFR3AENSG00000132294.9499.88540758.76930-0.602104.989802.71460HepG2EXOSC9
    PNISRENSG00000132424.102954.979602037.215800.536405.871003.40700HepG2EXOSC9
    NESENSG00000132688.10724.095301044.20200-0.528104.566302.38650HepG2EXOSC9
    BHMT2ENSG00000132840.5305.86170192.091500.671003.668601.68700HepG2EXOSC9
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    88 RBPs can affect the gene expression of EXOSC9 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    EXOSC9ENSG00000123737.8653.21420479.538400.445803.103201.97410HepG2AATF
    EXOSC9ENSG00000123737.8915.87970695.702300.396602.184501.70580HepG2AKAP1
    EXOSC9ENSG00000123737.8316.03950575.64490-0.865107.608706.33730HepG2ASCC1
    EXOSC9ENSG00000123737.8360.63090586.19210-0.700902.576701.70770HepG2BCLAF1
    EXOSC9ENSG00000123737.8557.87320855.04520-0.616105.947205.10990HepG2BOP1
    EXOSC9ENSG00000123737.8687.77840855.83190-0.315402.203301.51010HepG2CALR
    EXOSC9ENSG00000123737.8415.96430546.89910-0.394802.065601.39050HepG2CIRBP
    EXOSC9ENSG00000123737.8385.27350784.96700-1.0267012.7394011.38510HepG2CPSF6
    EXOSC9ENSG00000123737.8344.31140528.85850-0.619204.843203.97280HepG2DDX21
    EXOSC9ENSG00000123737.8496.28350666.45080-0.425302.441101.85000HepG2DDX3X
    EXOSC9ENSG00000123737.8495.96670679.25100-0.453703.119402.05340HepG2DDX5
    EXOSC9ENSG00000123737.8352.35860572.44640-0.700104.783403.99080HepG2DDX6
    EXOSC9ENSG00000123737.8311.19980431.08460-0.470103.381102.60880HepG2DNAJC21
    EXOSC9ENSG00000123737.8327.91110427.26330-0.381802.807102.15100HepG2DNAJC2
    EXOSC9ENSG00000123737.8321.97250550.35490-0.773406.043405.18530HepG2EIF2S1
    EXOSC9ENSG00000123737.8419.85930608.23020-0.534703.203802.51640HepG2EIF4A3
    EXOSC9ENSG00000123737.8392.96940592.15290-0.591603.135802.40630HepG2EIF4B
    EXOSC9ENSG00000123737.8545.18820916.92570-0.750108.354206.97160HepG2EIF4G2
    EXOSC9ENSG00000123737.8744.981401026.58730-0.462605.791704.97480HepG2ETF1
    EXOSC9ENSG00000123737.8210.82110473.25190-1.1666011.955808.82460HepG2EXOSC9
    EXOSC9ENSG00000123737.8466.43280889.79100-0.931809.129808.01030HepG2GPKOW
    EXOSC9ENSG00000123737.8708.81460891.67280-0.331103.072902.09420HepG2HNRNPA2B1
    EXOSC9ENSG00000123737.8293.46270484.09060-0.722105.529204.57590HepG2HNRNPC
    EXOSC9ENSG00000123737.8506.08550709.95920-0.488405.444104.47870HepG2HNRNPF
    EXOSC9ENSG00000123737.8543.81910849.14670-0.642905.690604.82180HepG2HNRNPLL
    EXOSC9ENSG00000123737.8455.70630699.10410-0.617406.547605.47600HepG2IGF2BP1
    EXOSC9ENSG00000123737.8418.33270578.64210-0.468002.799102.12090HepG2IGF2BP2
    EXOSC9ENSG00000123737.8616.90510947.75240-0.619504.455303.39230HepG2LARP4
    EXOSC9ENSG00000123737.8389.57400608.63400-0.643702.363101.36030HepG2NONO
    EXOSC9ENSG00000123737.8599.34620476.005300.332302.460301.65750HepG2PARN
    EXOSC9ENSG00000123737.8418.87620566.20430-0.434803.608102.93460HepG2PCBP1
    EXOSC9ENSG00000123737.8448.45850648.22960-0.531502.780101.73620HepG2PCBP2
    EXOSC9ENSG00000123737.8463.03500579.90670-0.324702.495701.75660HepG2PRPF4
    EXOSC9ENSG00000123737.8406.54410918.39750-1.1757020.0720018.66050HepG2PUF60
    EXOSC9ENSG00000123737.8674.25730974.20300-0.530905.932104.96350HepG2PUM2
    EXOSC9ENSG00000123737.8526.59710726.29750-0.463902.930801.90850HepG2RBM27
    EXOSC9ENSG00000123737.8496.59520764.84580-0.623106.171505.20870HepG2RPLP0
    EXOSC9ENSG00000123737.8426.94630614.40980-0.525102.575901.66270HepG2RPS10
    EXOSC9ENSG00000123737.8314.37810438.05550-0.478602.947302.31670HepG2RPS19
    EXOSC9ENSG00000123737.8440.71290669.85560-0.604004.595803.57940HepG2RPS2
    EXOSC9ENSG00000123737.8659.74640840.47000-0.349302.276201.63370HepG2SF3B1
    EXOSC9ENSG00000123737.8458.79970599.81200-0.386602.862902.26300HepG2SF3B4
    EXOSC9ENSG00000123737.8644.13300880.57600-0.451105.812604.85840HepG2SLBP
    EXOSC9ENSG00000123737.8619.85730935.17650-0.593303.291402.43620HepG2SNRNP70
    EXOSC9ENSG00000123737.8763.06190626.091300.285302.232801.79600HepG2SRSF1
    EXOSC9ENSG00000123737.8556.33920906.76980-0.7048011.3154010.16520HepG2SRSF5
    EXOSC9ENSG00000123737.8491.68170697.52200-0.504505.504704.57960HepG2SRSF7
    EXOSC9ENSG00000123737.8311.98180509.37370-0.707307.989107.13830HepG2SRSF9
    EXOSC9ENSG00000123737.8620.21620841.40470-0.440005.100604.44580HepG2SSB
    EXOSC9ENSG00000123737.8349.96190502.19030-0.521003.558902.50190HepG2SUPT6H
    EXOSC9ENSG00000123737.8306.21360660.20860-1.108405.097304.22380HepG2SUPV3L1
    EXOSC9ENSG00000123737.8805.48940562.803800.517105.675504.92220HepG2TAF15
    EXOSC9ENSG00000123737.8497.55930827.73540-0.734307.619106.49260HepG2TARDBP
    EXOSC9ENSG00000123737.8276.59240467.29320-0.756607.128306.39350HepG2TIAL1
    EXOSC9ENSG00000123737.8325.40230471.45080-0.534904.769104.06950HepG2TRIM56
    EXOSC9ENSG00000123737.8586.02150897.21640-0.614506.757605.29860HepG2TUFM
    EXOSC9ENSG00000123737.8855.28620636.095400.427103.063402.40390HepG2U2AF1
    EXOSC9ENSG00000123737.8665.76980949.67690-0.512403.357602.43700HepG2UBE2L3
    EXOSC9ENSG00000123737.8508.57420390.065000.382602.470101.75310HepG2UCHL5
    EXOSC9ENSG00000123737.8389.23730650.52730-0.7410010.324409.12630HepG2UPF1
    EXOSC9ENSG00000123737.8475.60070715.46000-0.589108.356107.53880HepG2ZNF622
    EXOSC9ENSG00000123737.81635.907001275.730700.358703.263801.96760K562AARS
    EXOSC9ENSG00000123737.82377.691603073.91560-0.370503.550202.14860K562ABCF1
    EXOSC9ENSG00000123737.82167.382501758.349300.301604.139003.46970K562AGGF1
    EXOSC9ENSG00000123737.81373.886102192.19240-0.674106.013604.86170K562CPSF6
    EXOSC9ENSG00000123737.8895.763501096.35600-0.291502.413301.43600K562CSTF2
    EXOSC9ENSG00000123737.81504.620901870.28910-0.313903.915302.46070K562DDX21
    EXOSC9ENSG00000123737.83019.481902578.149400.227902.974902.30060K562DDX47
    EXOSC9ENSG00000123737.82292.986201968.896900.219702.185001.41730K562DKC1
    EXOSC9ENSG00000123737.8914.358001116.01280-0.287502.810501.59000K562EIF2S1
    EXOSC9ENSG00000123737.81235.885701951.01770-0.658706.183305.17070K562EIF2S2
    EXOSC9ENSG00000123737.8930.38860653.092000.510402.279401.37580K562EIF3A
    EXOSC9ENSG00000123737.82465.904003217.01350-0.383606.137404.75250K562EIF4G2
    EXOSC9ENSG00000123737.8514.154501440.74790-1.4865012.755208.98240K562EXOSC9
    EXOSC9ENSG00000123737.81665.769701103.920300.5935010.903509.78790K562FXR1
    EXOSC9ENSG00000123737.81282.523602093.08490-0.706606.163804.98080K562GPKOW
    EXOSC9ENSG00000123737.81337.813001705.54030-0.350403.489402.27710K562HNRNPA1
    EXOSC9ENSG00000123737.8726.587901396.37040-0.9425012.3262011.14110K562HNRNPC
    EXOSC9ENSG00000123737.81984.369301468.853600.433903.758302.29480K562HNRNPK
    EXOSC9ENSG00000123737.82490.335301817.285000.454503.829802.72400K562HNRNPM
    EXOSC9ENSG00000123737.81197.009701495.42220-0.321102.566101.43140K562IGF2BP3
    EXOSC9ENSG00000123737.81191.130601787.02210-0.585204.522103.29440K562KRR1
    EXOSC9ENSG00000123737.81516.995402043.05030-0.429503.099002.16950K562METAP2
    EXOSC9ENSG00000123737.82101.464101122.591900.9045015.2999013.52350K562PRPF8
    EXOSC9ENSG00000123737.82013.374801501.479600.423105.086104.20930K562PTBP1
    EXOSC9ENSG00000123737.82910.459903510.00170-0.270202.400301.64210K562PUF60
    EXOSC9ENSG00000123737.82796.414301814.587200.623807.859406.99150K562PUS1
    EXOSC9ENSG00000123737.8881.651101141.95440-0.373203.035501.99290K562RCC2
    EXOSC9ENSG00000123737.81463.313301143.675900.355502.411201.65110K562RPS19
    EXOSC9ENSG00000123737.81457.127301174.673200.310802.493901.46800K562SAFB
    EXOSC9ENSG00000123737.81548.951701214.529400.350802.738801.30590K562SDAD1
    EXOSC9ENSG00000123737.81604.945401869.35270-0.220002.078301.36480K562SF3A3
    EXOSC9ENSG00000123737.81772.280401471.889600.267802.235301.59140K562SRSF1
    EXOSC9ENSG00000123737.81052.757901389.93800-0.400803.427902.23820K562SRSF5
    EXOSC9ENSG00000123737.81882.012701322.412300.509007.279605.93060K562SYNCRIP
    EXOSC9ENSG00000123737.81051.212801437.02620-0.451004.962303.81550K562TIA1
    EXOSC9ENSG00000123737.8897.387301204.18570-0.424302.308501.45950K562TIAL1
    EXOSC9ENSG00000123737.8963.448201278.98530-0.408703.420502.34730K562TRIM56
    EXOSC9ENSG00000123737.81743.026301252.027400.477203.869502.53180K562U2AF1
    EXOSC9ENSG00000123737.81898.228701292.966700.553908.497907.07730K562U2AF2
    EXOSC9ENSG00000123737.81321.842202008.80150-0.6038014.5841013.08600K562UPF1
    EXOSC9ENSG00000123737.81743.511702361.25180-0.437603.711602.30930K562UTP3
    EXOSC9ENSG00000123737.82190.786302867.75670-0.388504.175603.07840K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for EXOSC9 is not available on ENCORE database.





    36 RBPs can affect the splicing of EXOSC9 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.240000.000000.00000includedK562SRSF1
    SEEXOSC9ENSG00000123737.8chr4+122737523122737602122735020122735202122737926122738066-0.112000.000010.00030excludedK562SF3B4
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.550000.000000.00000includedK562XRCC6
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.127000.000090.01560includedK562FMR1
    SEEXOSC9ENSG00000123737.8chr4+122737298122737349122735020122735202122737523122737602-0.173000.000000.00045excludedK562WDR43
    SEEXOSC9ENSG00000123737.8chr4+122737298122737349122735020122735202122737523122737602-0.107000.000080.00161excludedHepG2U2AF2
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.252000.000090.00960includedHepG2AKAP1
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350021227352021227375231227376020.140000.000430.00602includedK562AQR
    SEEXOSC9ENSG00000123737.8chr4+122737523122737602122735002122735202122737926122738064-0.357000.000000.00000excludedK562AQR
    SEEXOSC9ENSG00000123737.8chr4+122724045122724172122723828122723948122725776122725914-0.069000.000070.00132excludedK562AQR
    SEEXOSC9ENSG00000123737.8chr4+122731066122731254122728694122728777122732737122732815-0.067000.000030.00055excludedK562AQR
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.173000.000170.00946includedK562FXR1
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.289000.000020.00326includedK562SUPV3L1
    SEEXOSC9ENSG00000123737.8chr4+122737523122737602122735020122735202122737926122738066-0.078000.000000.00000excludedK562PUS1
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.153000.000010.00110includedHepG2SFPQ
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.190000.000000.00003includedK562GPKOW
    SEEXOSC9ENSG00000123737.8chr4+122737298122737349122735020122735202122737523122737602-0.101000.000280.04874excludedK562LARP4
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373781227350021227352021227375231227376020.082000.000300.02568includedK562HNRNPL
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.371000.000000.00001includedHepG2SRSF1
    SEEXOSC9ENSG00000123737.8chr4+122737523122737602122735020122735202122737926122738066-0.254000.000000.00000excludedHepG2SF3A3
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.162000.000080.01905includedK562RBM22
    SEEXOSC9ENSG00000123737.8chr4+122737523122737602122735020122735202122737926122738066-0.087000.000000.00008excludedK562RBM22
    SEEXOSC9ENSG00000123737.8chr4+122737523122737602122735020122735202122737926122738066-0.296000.000000.00000excludedK562U2AF2
    SEEXOSC9ENSG00000123737.8chr4+122737298122737349122735020122735202122737523122737602-0.121000.001830.05973excludedK562HNRNPU
    SEEXOSC9ENSG00000123737.8chr4+122737523122737602122735020122735202122737926122738066-0.064000.000000.00002excludedK562RBM15
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.317000.000050.01782includedHepG2XRCC6
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.153000.000110.00696includedK562PTBP1
    SEEXOSC9ENSG00000123737.8chr4+1227372981227373491227350201227352021227375231227376020.199000.000090.00253includedK562HNRNPC
    SEEXOSC9ENSG00000123737.8chr4+122731121122731228122728694122728777122732737122732826-0.100000.001530.02731excludedK562HNRNPC
    A3SSEXOSC9ENSG00000123737.8chr4+1227309881227311791227311211227311791227286591227287770.076000.000000.00000longerK562AQR
    A3SSEXOSC9ENSG00000123737.8chr4+1227240451227241721227240691227241721227237701227239480.141000.000000.00000longerK562AQR
    A3SSEXOSC9ENSG00000123737.8chr4+1227327181227328261227327371227328261227310661227312540.061000.000000.00000longerK562AQR
    A5SSEXOSC9ENSG00000123737.8chr4+122731066122731254122731066122731071122732737122732826-0.074000.000060.00170shorterK562AQR
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.083000.000010.00011includedK562PUS1
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.058000.000250.03758includedK562UPF1
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.194000.000300.00979includedHepG2IGF2BP3
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.071000.000190.00748includedHepG2FTO
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.216000.000010.00062includedHepG2SRSF1
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.098000.007780.07075includedHepG2QKI
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.134000.002310.02399includedHepG2TAF15
    RIEXOSC9ENSG00000123737.8chr4+122735020122737602122735020122735202122737523122737602-0.056000.004380.04149excludedHepG2U2AF1
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.202000.000010.00020includedHepG2SF3B4
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.188000.000300.00759includedHepG2SRSF9
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.121000.000900.02312includedHepG2PTBP1
    RIEXOSC9ENSG00000123737.8chr4+1227350201227376021227350201227352021227375231227376020.095000.000070.00058includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122732737122732826122734388122734535122731121122731254122735020122735202-0.088000.004710.066122includedK562PUS1
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227311211227312281227286941227287771227327371227328260.102000.000630.035631includedK562SF3B1
    MXEEXOSC9ENSG00000123737.8chr4+1227327371227328261227343881227345351227311211227312541227350201227352020.103000.001160.043941includedK562LIN28B
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732737122732826122728694122728777122734388122734535-0.147000.000000.000032includedK562LIN28B
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227311211227312281227286941227287771227327371227328260.059000.002560.081151includedK562FXR1
    MXEEXOSC9ENSG00000123737.8chr4+1227308251227310711227310991227312541227286941227287771227327371227328260.069000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227308251227310711227311211227312281227286941227287771227327371227328260.075000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227240451227241721227257421227259141227238281227239481227286941227287770.092000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227240451227241721227257761227259141227238281227239481227286941227287770.090000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227240451227241721227257251227259141227238281227239481227286941227287770.091000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309341227310711227310991227312541227286941227287771227327371227328260.073000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309341227310711227311211227312281227286941227287771227327371227328260.079000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227308771227310711227310991227312541227286941227287771227327371227328260.071000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227308771227310711227311211227312281227286941227287771227327371227328260.077000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227310041227310711227311211227312281227286941227287771227327371227328260.054000.000050.000601includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227372981227373491227375231227376021227350201227352021227379261227380640.118000.000020.000321includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227311211227312541227286941227287771227327371227328260.104000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227310991227312541227286941227287771227327371227328260.174000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227310991227312281227286941227287771227327371227328260.233000.006210.043181includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227311211227312281227286941227287771227327371227328260.191000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227326361227328261227286941227287771227343881227344480.100000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227327181227328261227286941227287771227343881227344480.099000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227327371227328261227286941227287771227343881227344480.092000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309201227310711227310991227312541227286941227287771227327371227328260.077000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227309201227310711227311211227312281227286941227287771227327371227328260.085000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227310661227312541227326361227328261227286941227287771227343881227345350.051000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+1227310661227312541227327181227328261227286941227287771227343881227345350.051000.000000.000001includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122732737122732826122734388122734535122731121122731254122735020122735202-0.129000.000020.000332includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122732737122732826122734296122734535122731066122731254122735020122735202-0.130000.000020.000322includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122732737122732826122734309122734535122731066122731254122735020122735202-0.127000.000040.000492includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122724069122724172122725725122725914122723828122723948122732737122732826-0.066000.000000.000022includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122724069122724172122725742122725914122723828122723948122732737122732826-0.064000.000000.000042includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732737122732826122728694122728777122734388122734535-0.094000.008450.055222includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732636122732826122728694122728777122734388122734535-0.088000.014300.084262includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732718122732826122728694122728777122734388122734535-0.089000.013490.080492includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122725776122725914122728631122728777122724045122724172122732737122732826-0.052000.000060.000732includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122725776122725914122728631122728777122724045122724172122730988122731071-0.151000.000000.000002includedK562AQR
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732737122732826122728694122728777122734388122734535-0.093000.001080.059082includedK562LARP7
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732737122732826122728694122728777122734388122734535-0.072000.000430.070682includedK562SDAD1
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227311211227312281227286941227287771227327371227328260.089000.000130.014051includedK562PHF6
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732737122732826122728694122728777122734388122734535-0.127000.000000.001092includedK562PHF6
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732737122732826122728694122728777122734388122734535-0.101000.001240.024402includedK562HNRNPC
    MXEEXOSC9ENSG00000123737.8chr4+1227327371227328261227343881227345351227311211227312541227350201227352020.080000.006280.099461includedK562PPIL4
    MXEEXOSC9ENSG00000123737.8chr4+122731121122731254122732737122732826122728694122728777122734388122734535-0.105000.000330.015972includedK562DDX55
    MXEEXOSC9ENSG00000123737.8chr4+1227309881227310711227311211227312281227286941227287771227327371227328260.068000.001010.020051includedK562SF3B4
    MXEEXOSC9ENSG00000123737.8chr4+1227327371227328261227343881227345351227311211227312541227350201227352020.220000.000000.000031includedK562SERBP1

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for EXOSC9 is not avaliable on ENCORE database.