RNGTT

General Information

Gene Name       : RNGTT
Gene ID             : ENSG00000111880.15
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: RNGTT)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878RNGTTENSG00000111880.1519.0915.6917.39ENCSR000AEF
HepG2RNGTTENSG00000111880.157.0813.3410.21ENCSR985KAT
K562RNGTTENSG00000111880.1512.2214.3613.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for RNGTT is not avaliable on ENCORE database.



Proteins bound to RNA
  • RNGTT RNA is bound by 21 proteins.  







eCLIP assay for RNGTT is not avaliable on ENCORE database.





21 proteins are bound to RNGTT RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr68932030189320375-3'-UTR,intron-Distal4.406954.46422K562UPF1
chr68932193689322005-3'-UTR,intron-Distal,intron-Proximal3.182693.07714K562YBX3
chr68932221989322305-3'-UTR,intron-Distal4.9868318.23964K562PUM2
chr68967312589673238-5'-UTR,CDS,intron-Distal4.721526.40909HepG2NCBP2
chr68967316489673247-5'-UTR,intron-Distal3.602516.02304HepG2GRWD1
chr68963892989638986-5'-UTR,CDS,intron-Distal4.153765.79432HepG2BCLAF1
chr68961602489616089-CDS,intron-Distal,intron-Proximal3.038093.31830K562KHSRP
chr68965080189650890-CDS,intron-Distal3.276476.18332HepG2GRWD1
chr68960026989600315-CDS,intron-Distal3.883473.68471HepG2BCLAF1
chr68960021889600274-CDS,intron-Distal3.859803.12746HepG2GRWD1
chr68932252289322577-CDS,intron-Distal3.313854.70209K562YBX3
chr68947949389479529-CDS,intron-Distal3.169114.26492HepG2BCLAF1
chr68961453889614599-CDS,intron-Distal4.566135.24929K562ZNF622
chr68960021089600269-CDS,intron-Distal,intron-Proximal3.796395.56491HepG2BCLAF1
chr68947947689479527-CDS,intron-Distal,intron-Proximal4.195873.16051HepG2PPIG
chr68961443889614526-CDS,intron-Distal3.694758.25092HepG2BCLAF1
chr68961609589616159-CDS,intron-Distal4.478373.87582K562ZNF622
chr68961443489614538-CDS,intron-Distal3.7199110.01989K562ZNF622
chr68961443389614548-CDS,intron-Distal,intron-Proximal3.199606.95218K562UCHL5
chr68955949389559520-CDS,intron-Distal4.136093.06595HepG2BCLAF1
chr68960154689601625-CDS,intron-Distal4.241307.53358HepG2BCLAF1
chr68941260589412648-intron-Distal4.431025.12361K562EXOSC5
chr68939522489395310-intron-Distal4.401458.48623HepG2PCBP2
chr68957492789575079-intron-Distal3.278593.59771HepG2QKI
chr68966259389662644-intron-Distal4.102143.34098HepG2HNRNPM
chr68953972489539786-intron-Distal4.143537.61413K562EXOSC5
chr68933002989330178-intron-Distal4.227814.93238K562QKI
chr68954515089545269-intron-Distal4.694067.24774K562KHSRP
chr68966257589662643-intron-Distal4.359174.02846K562HNRNPM
chr68941074989410827-intron-Distal6.4672818.74271K562PTBP1
chr68953934089539410-intron-Distal3.366215.59320HepG2SUGP2
chr68944118989441255-intron-Distal3.841363.05187HepG2QKI
chr68966215889662222-intron-Distal4.068324.27460K562HNRNPM
chr68956722389567291-intron-Distal3.173743.29251K562KHSRP
chr68933003489330182-intron-Distal4.626285.89032HepG2QKI
chr68953979389539831-intron-Distal4.014993.30687K562EXOSC5
chr68954085689540906-intron-Distal4.546025.44508K562EXOSC5
chr68936968689369763-intron-Distal4.781924.80466K562EXOSC5
chr68935480589354847-intron-Distal4.461533.30696K562EXOSC5
chr68966251189662575-intron-Distal4.403675.31171K562HNRNPM
chr68941163289411720-intron-Distal4.507025.12361K562EXOSC5
chr68953934189539418-intron-Distal5.0789512.22629K562EXOSC5
chr68960663389606685-intron-Distal4.058413.62366HepG2HNRNPM
chr68966670289666755-intron-Distal4.097303.01456K562EXOSC5
chr68952237589522521-intron-Distal3.097325.57010K562KHSRP
chr68943567989435760-intron-Distal3.628126.13897K562PTBP1
chr68935304989353112-intron-Distal3.846053.01445K562EXOSC5
chr68943559189435679-intron-Distal5.1935412.52640K562PTBP1
chr68959730089597402-intron-Distal3.818966.04886K562KHSRP
chr68941073689410834-intron-Distal4.484408.88160HepG2PTBP1
chr68954110389541162-intron-Distal5.299509.02435K562EXOSC5
chr68955434589554444-intron-Distal3.849666.25598K562KHSRP
chr68947526489475379-intron-Distal4.440585.44709K562KHSRP
chr68935594689356001-intron-Distal4.014993.30696K562EXOSC5
chr68936791289368021-intron-Distal4.861905.04680K562HNRNPM
chr68952118789521371-intron-Distal3.749743.24603K562KHSRP
chr68945223489452397-intron-Distal3.294803.64762HepG2QKI
chr68953908689539140-intron-Distal4.626754.80399K562EXOSC5
chr68966252189662577-intron-Distal4.183804.10336HepG2SUGP2
chr68960485189605009-intron-Distal4.296206.88352HepG2HNRNPL
chr68936779889367867-intron-Distal3.247673.11000HepG2HNRNPM
chr68955733789557397-intron-Distal3.252834.52210K562KHSRP
chr68953244989532525-intron-Distal3.996863.90026K562KHSRP
chr68936802689368101-intron-Distal3.301123.39857HepG2HNRNPM
chr68937326489373356-intron-Distal3.272244.14346HepG2SUGP2
chr68954138289541432-intron-Distal4.235283.30696K562EXOSC5
chr68937330389373393-intron-Distal4.532545.42507HepG2MATR3
chr68955824489558373-intron-Distal5.3812610.72437K562KHSRP
chr68955725389557337-intron-Distal4.038093.90026K562KHSRP
chr68950345289503548-intron-Distal4.091724.51536HepG2HNRNPC
chr68955752589557618-intron-Distal3.389803.90146K562KHSRP
chr68942746289427514-intron-Distal3.846053.01445K562EXOSC5
chr68962371289623765-intron-Distal4.667985.12361K562EXOSC5
chr68961589589616024-intron-Distal,intron-Proximal4.6846812.23779K562KHSRP
chr68945870389458788-intron-Distal3.173693.35050HepG2SUGP2
chr68962258189622629-intron-Distal3.385063.72952K562EXOSC5
chr68959421789594284-intron-Distal4.461843.92866K562PTBP1
chr68963855389638698-intron-Distal,intron-Proximal3.906573.89294K562KHSRP
chr68943559289435766-intron-Distal5.3301416.52135HepG2PTBP1
chr68953972089539796-intron-Distal4.522844.51299HepG2SUGP2
chr68937110089371218-intron-Distal4.907255.44508K562EXOSC5
chr68962269389622747-intron-Distal4.597304.80399K562EXOSC5
chr68936797589368039-intron-Distal3.314493.08928HepG2MATR3
chr68946690689467038-intron-Distal5.0068214.72922HepG2QKI
chr68964586289645999-intron-Distal3.119393.16798K562SAFB2
chr68937182089371856-intron-Distal4.164773.59909K562EXOSC5
chr68938149989381599-intron-Distal4.385064.48560K562EXOSC5
chr68951412989514187-intron-Distal4.521203.96837K562XRCC6
chr68959422189594293-intron-Distal3.375783.30286HepG2PTBP1
chr68955936189559445-intron-Distal,intron-Proximal3.799513.25538K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for RNGTT is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for RNGTT is not available on ENCORE database.

  • 104 RBPs can affect the levels of RNGTT.  








The Knockdown/knockout RNA-Seq assay for RNGTT is not available on ENCORE database.





104 RBPs can affect the gene expression of RNGTT :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
RNGTTENSG00000111880.11566.55680895.93060-0.661204.976303.75040HepG2ABCF1
RNGTTENSG00000111880.11552.96860783.18740-0.502205.901504.81930HepG2AKAP8L
RNGTTENSG00000111880.111434.163301003.257700.515408.580207.48340HepG2AUH
RNGTTENSG00000111880.11646.77140875.94320-0.437602.954402.15610HepG2CIRBP
RNGTTENSG00000111880.11649.53040779.34740-0.262902.262301.65170HepG2CKAP4
RNGTTENSG00000111880.11383.69260640.38000-0.739006.569105.54240HepG2CPSF6
RNGTTENSG00000111880.11549.78730720.96330-0.391104.317203.30340HepG2DDX19B
RNGTTENSG00000111880.11284.72540627.53070-1.1401015.0967013.66130HepG2DDX21
RNGTTENSG00000111880.11600.248401067.40320-0.830509.139308.05790HepG2DDX3X
RNGTTENSG00000111880.11435.01740721.82620-0.730602.529601.78590HepG2DDX55
RNGTTENSG00000111880.11600.38900916.91810-0.610904.658803.87590HepG2DDX6
RNGTTENSG00000111880.11446.27240602.84390-0.433902.609201.65540HepG2DHX30
RNGTTENSG00000111880.11520.53920745.81920-0.518805.740004.82910HepG2DKC1
RNGTTENSG00000111880.11319.37500625.03270-0.9687014.2938012.79320HepG2DNAJC21
RNGTTENSG00000111880.11472.83350619.51470-0.389803.851603.10850HepG2DNAJC2
RNGTTENSG00000111880.11446.44280641.45710-0.522903.386702.37480HepG2EEF2
RNGTTENSG00000111880.11334.05020534.78110-0.678905.203103.67990HepG2EFTUD2
RNGTTENSG00000111880.11749.08140974.11730-0.379002.114001.55210HepG2EIF4A3
RNGTTENSG00000111880.111304.77220998.657000.385604.352903.34600HepG2EIF4G1
RNGTTENSG00000111880.11956.513201151.81970-0.268102.361601.79820HepG2ETF1
RNGTTENSG00000111880.11362.46200561.40460-0.631204.691402.48810HepG2EXOSC9
RNGTTENSG00000111880.11641.24070982.83880-0.616105.513504.55950HepG2FXR1
RNGTTENSG00000111880.11696.53970911.72960-0.388402.325301.71300HepG2G3BP1
RNGTTENSG00000111880.11726.16270967.91450-0.414602.839101.93580HepG2G3BP2
RNGTTENSG00000111880.11247.23170463.65610-0.907207.530406.07770HepG2GEMIN5
RNGTTENSG00000111880.11238.62570725.93030-1.6051022.3798020.74800HepG2GPKOW
RNGTTENSG00000111880.11280.43360631.02070-1.1700014.8496013.54650HepG2HNRNPA1
RNGTTENSG00000111880.11778.96370930.35460-0.256202.252001.40040HepG2HNRNPA2B1
RNGTTENSG00000111880.11360.74840701.89430-0.9603011.129009.81700HepG2HNRNPC
RNGTTENSG00000111880.11368.50100926.75410-1.3305020.2412018.60730HepG2IGF2BP2
RNGTTENSG00000111880.11496.69980712.22160-0.520006.859005.75740HepG2ILF2
RNGTTENSG00000111880.11645.19520932.15460-0.530803.310902.20220HepG2KHSRP
RNGTTENSG00000111880.11549.36390712.58990-0.375303.857502.65630HepG2KIF1C
RNGTTENSG00000111880.11683.518001260.27330-0.882703.965002.96680HepG2LARP4
RNGTTENSG00000111880.11702.47710983.18190-0.485003.534102.79270HepG2MAGOH
RNGTTENSG00000111880.11755.81330988.68540-0.387502.243001.67140HepG2MATR3
RNGTTENSG00000111880.11356.37740545.01320-0.612902.588901.56900HepG2METAP2
RNGTTENSG00000111880.11545.17850732.34890-0.425802.949202.11460HepG2MSI2
RNGTTENSG00000111880.11694.755501011.97510-0.542604.154303.38400HepG2NCBP2
RNGTTENSG00000111880.11459.28500614.26410-0.419502.506801.79400HepG2NSUN2
RNGTTENSG00000111880.11463.21340868.86680-0.9075017.4886016.17360HepG2PCBP1
RNGTTENSG00000111880.11307.45650430.63460-0.486103.253701.91580HepG2PKM
RNGTTENSG00000111880.11415.87370621.89460-0.580506.083305.02300HepG2PPIL4
RNGTTENSG00000111880.11777.03880595.499300.383803.703802.82080HepG2PRPF4
RNGTTENSG00000111880.11682.99700958.26310-0.488504.808704.04920HepG2PUF60
RNGTTENSG00000111880.111440.95320957.539600.589508.578007.57070HepG2QKI
RNGTTENSG00000111880.111103.53410869.003700.344602.289501.67050HepG2RBM25
RNGTTENSG00000111880.11486.68190782.25480-0.684705.998704.53620HepG2RBM27
RNGTTENSG00000111880.11341.93000759.63740-1.151603.808801.87490HepG2RBM39
RNGTTENSG00000111880.11701.24350983.91460-0.488605.999405.25360HepG2NELFE
RNGTTENSG00000111880.11451.08350661.35000-0.552003.909701.47300HepG2RPL23A
RNGTTENSG00000111880.11319.52850506.68560-0.665105.463404.63170HepG2RPS19
RNGTTENSG00000111880.11500.33960721.46810-0.528003.735802.81030HepG2RPS2
RNGTTENSG00000111880.11490.26010620.93510-0.340902.810502.16250HepG2SAFB2
RNGTTENSG00000111880.11360.92650810.48890-1.167103.553401.85780HepG2SFPQ
RNGTTENSG00000111880.11763.27670918.70320-0.267402.767702.06580HepG2SLBP
RNGTTENSG00000111880.11615.01800724.11480-0.235601.851201.30750HepG2SMN1
RNGTTENSG00000111880.11507.92620762.96940-0.587003.106602.27810HepG2SNRNP70
RNGTTENSG00000111880.111426.923901087.376300.392005.835905.18260HepG2SRFBP1
RNGTTENSG00000111880.111225.62810960.769800.351203.884203.34740HepG2SRSF1
RNGTTENSG00000111880.11569.92070781.61780-0.455705.348804.62590HepG2SRSF9
RNGTTENSG00000111880.11758.68030944.13510-0.315502.983202.45520HepG2SSB
RNGTTENSG00000111880.11417.94460611.02010-0.547904.227403.07690HepG2SUPT6H
RNGTTENSG00000111880.11379.75040677.51070-0.8352010.790409.91490HepG2TIAL1
RNGTTENSG00000111880.11502.25930683.56890-0.444704.595303.90610HepG2TRIM56
RNGTTENSG00000111880.11731.93300936.08560-0.354902.565001.72640HepG2TUFM
RNGTTENSG00000111880.11488.54510868.98670-0.830802.214001.34210HepG2U2AF2
RNGTTENSG00000111880.11638.48320990.76820-0.633905.340404.15950HepG2UBE2L3
RNGTTENSG00000111880.11404.47800658.33410-0.702802.194701.30650HepG2UPF2
RNGTTENSG00000111880.11651.63140802.04240-0.299602.438101.86830HepG2UTP3
RNGTTENSG00000111880.11378.18530707.44350-0.903503.536902.72450HepG2XRN2
RNGTTENSG00000111880.11485.54260587.67170-0.275401.944901.36660HepG2ZC3H8
RNGTTENSG00000111880.11699.11320854.01970-0.288702.481001.57550K562BCLAF1
RNGTTENSG00000111880.11808.854701257.12710-0.636203.514602.29270K562CNOT7
RNGTTENSG00000111880.11524.51430807.02150-0.621606.645105.42330K562CPSF6
RNGTTENSG00000111880.11527.07520781.58390-0.568405.255303.76080K562DDX3X
RNGTTENSG00000111880.11961.960201404.98480-0.546509.370808.25750K562DDX47
RNGTTENSG00000111880.11611.54050792.44160-0.373903.218501.78400K562DDX6
RNGTTENSG00000111880.11249.23360423.88920-0.766206.114804.13920K562DNAJC21
RNGTTENSG00000111880.11624.06660858.58350-0.460305.129603.45390K562EIF2S1
RNGTTENSG00000111880.11644.76290816.59250-0.340802.220201.48180K562EIF4A3
RNGTTENSG00000111880.111592.560401880.54830-0.239802.327801.46140K562EIF4G2
RNGTTENSG00000111880.11415.21070712.82120-0.779709.805007.06070K562EWSR1
RNGTTENSG00000111880.11752.65910997.96990-0.407003.082002.18420K562FIP1L1
RNGTTENSG00000111880.11535.33530821.16380-0.617205.531004.31290K562FMR1
RNGTTENSG00000111880.11490.33430696.02710-0.505403.475102.44250K562FTO
RNGTTENSG00000111880.11404.31530770.49100-0.9303011.7367010.07820K562GPKOW
RNGTTENSG00000111880.111026.737701386.66440-0.433603.698002.82800K562GRSF1
RNGTTENSG00000111880.11321.41650751.25880-1.2249015.1037013.79430K562HNRNPC
RNGTTENSG00000111880.11870.302301120.32860-0.364303.756602.71350K562HNRNPU
RNGTTENSG00000111880.11590.613601176.36350-0.994004.247401.56480K562HNRNPUL1
RNGTTENSG00000111880.11992.198401352.95400-0.447403.881602.94250K562HSPD1
RNGTTENSG00000111880.11598.265301068.61220-0.836908.347606.19530K562IGF2BP2
RNGTTENSG00000111880.11415.11890657.94500-0.664404.249303.06600K562KRR1
RNGTTENSG00000111880.11777.615401121.46430-0.528303.233402.22850K562MATR3
RNGTTENSG00000111880.11423.80300752.09190-0.827509.718607.99950K562METAP2
RNGTTENSG00000111880.111376.937202004.48540-0.541805.938104.29430K562MSI2
RNGTTENSG00000111880.11808.830501059.04620-0.388904.724403.69050K562MTPAP
RNGTTENSG00000111880.11833.421301176.74040-0.497709.060907.81610K562NSUN2
RNGTTENSG00000111880.111421.363901932.31830-0.443105.372203.46340K562PNPT1
RNGTTENSG00000111880.11912.894301132.97670-0.311602.001701.30760K562PPIG
RNGTTENSG00000111880.11918.67650654.641900.488803.936203.04320K562PRPF8
RNGTTENSG00000111880.111675.341802138.36050-0.352004.491903.26050K562PUM2
RNGTTENSG00000111880.11646.64180886.78700-0.455603.749801.73570K562RECQL
RNGTTENSG00000111880.11983.212001161.07550-0.239902.030501.32440K562SF3A3
RNGTTENSG00000111880.11556.46850732.82230-0.397202.197901.34090K562SF3B1
RNGTTENSG00000111880.11589.203601066.51060-0.856104.094902.38390K562SFPQ
RNGTTENSG00000111880.11672.150001010.48730-0.588204.599203.18460K562SRSF5
RNGTTENSG00000111880.11662.32500819.66150-0.307502.467001.36550K562SRSF7
RNGTTENSG00000111880.11825.58780647.813000.349702.752201.93480K562SYNCRIP
RNGTTENSG00000111880.11731.846201083.17520-0.565702.715402.01400K562TARDBP
RNGTTENSG00000111880.11751.707201044.80760-0.475003.292202.38840K562TIA1
RNGTTENSG00000111880.11447.36240647.86070-0.534203.543202.48010K562TIAL1
RNGTTENSG00000111880.11531.55910688.08730-0.372402.174401.35110K562TRIM56
RNGTTENSG00000111880.11570.26310846.54980-0.570004.266502.84780K562U2AF1
RNGTTENSG00000111880.11648.14600874.23070-0.431703.990203.02820K562U2AF2
RNGTTENSG00000111880.111862.540202313.35010-0.312702.750801.35410K562UBE2L3
RNGTTENSG00000111880.11439.91680670.91000-0.608904.610303.26450K562UCHL5
RNGTTENSG00000111880.111000.814801247.71930-0.318103.795602.96730K562UPF1
RNGTTENSG00000111880.11822.450301067.63980-0.376403.288702.33740K562WDR3
RNGTTENSG00000111880.11903.466201110.18150-0.297303.392402.46460K562WDR43
RNGTTENSG00000111880.111056.424201648.62350-0.642108.708707.04990K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for RNGTT is not available on ENCORE database.





6 RBPs can affect the splicing of RNGTT :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SERNGTTENSG00000111880.11chr6-896015248960163489600213896003158961443389614674-0.057000.010260.08294excludedK562AQR
SERNGTTENSG00000111880.11chr6-895112828951135189479492894795938955407589554240-0.294000.000000.00002excludedK562AQR
SERNGTTENSG00000111880.11chr6-893880718938813889323990893241148947949289479593-0.130000.000010.00026excludedK562AQR
SERNGTTENSG00000111880.11chr6-895112828951135189479492894795938955407589554240-0.196000.001630.02547excludedK562PUS1
SERNGTTENSG00000111880.11chr6-895112828951135189479492894795938955407589554240-0.193000.000330.05461excludedK562LARP4
SERNGTTENSG00000111880.11chr6-8934542489345498893239908932411489388071893881380.090000.000500.01282includedK562U2AF1
SERNGTTENSG00000111880.11chr6-895112828951135189479492894795938955407589554198-0.276000.000800.02308excludedK562AGGF1
SERNGTTENSG00000111880.11chr6-8951341689513528895112828951135189554075895542400.800000.001070.02045includedK562HNRNPC
A3SSRNGTTENSG00000111880.11chr6-8956334789563505895633478956348389600213896003150.276000.000000.00000longerK562AQR
A3SSRNGTTENSG00000111880.11chr6-8932399089324170893239908932411489388071893881380.112000.000000.00001longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for RNGTT is not avaliable on ENCORE database.