CCL20

General Information

Gene Name       : CCL20
Gene ID             : ENSG00000115009.12
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCL20)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCL20ENSG00000115009.129.327.358.34ENCSR000AEF
HepG2CCL20ENSG00000115009.1274.90142.29108.59ENCSR985KAT
K562CCL20ENSG00000115009.120.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCL20 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCL20 RNA is bound by 12 proteins.  







eCLIP assay for CCL20 is not avaliable on ENCORE database.





12 proteins are bound to CCL20 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2228682099228682121+3'-UTR3.9989717.34752HepG2FUBP3
chr2228682021228682052+3'-UTR4.6543726.33823HepG2TIAL1
chr2228682184228682234+3'-UTR5.3151118.68143HepG2FUBP3
chr2228682052228682064+3'-UTR3.0694711.58137HepG2TIAL1
chr2228682008228682054+3'-UTR5.0941942.37962HepG2FUBP3
chr2228682108228682136+3'-UTR3.6286416.95472HepG2TIAL1
chr2228681973228682001+3'-UTR5.2809914.20446HepG2FUBP3
chr2228681874228681946+3'-UTR3.550448.58463HepG2LIN28B
chr2228682091228682099+3'-UTR3.6284714.86439HepG2FUBP3
chr2228682186228682221+3'-UTR5.713219.23463HepG2TIAL1
chr2228682121228682150+3'-UTR5.1587915.15987HepG2FUBP3
chr2228682122228682139+3'-UTR3.0762214.27023HepG2DDX55
chr2228682052228682093+3'-UTR4.845705.48435HepG2TIA1
chr2228682065228682091+3'-UTR3.5286016.03520HepG2FUBP3
chr2228682064228682108+3'-UTR3.2458815.79735HepG2TIAL1
chr2228682136228682159+3'-UTR3.593789.61154HepG2TIAL1
chr2228682093228682154+3'-UTR4.710215.89618HepG2TIA1
chr2228682054228682065+3'-UTR3.7677016.16915HepG2FUBP3
chr2228682009228682021+3'-UTR4.0556314.74746HepG2TIAL1
chr2228682011228682052+3'-UTR4.485194.25353HepG2TIA1
chr2228678562228678610+5'-UTR4.433689.95851HepG2NCBP2
chr2228678626228678705+5'-UTR,CDS,intron-Proximal3.5593122.85325HepG2DDX3X
chr2228678606228678638+5'-UTR,CDS3.163336.49234HepG2YBX3
chr2228680217228680266+CDS3.186186.11293HepG2AQR
chr2228680230228680270+CDS3.654015.44144HepG2RPS3
chr2228681025228681082+CDS3.513613.19472HepG2SND1
chr2228678681228678744+CDS,intron-Proximal4.193095.93840HepG2PRPF8
chr2228680224228680281+CDS4.334958.59673HepG2SND1
chr2228680162228680217+CDS,intron-Proximal4.7518115.81512HepG2AQR
chr2228678629228678704+CDS,intron-Proximal5.5305932.75597HepG2RPS3
chr2228678698228678733+CDS,intron-Proximal4.579273.93614HepG2AQR
chr2228681046228681075+CDS4.573036.60283HepG2RPS3
chr2228678638228678658+CDS3.379927.59544HepG2YBX3
chr2228681096228681133+CDS,intron-Proximal3.861725.56912HepG2AQR
chr2228678658228678703+CDS3.033099.37821HepG2YBX3
chr2228680178228680217+CDS6.3999314.97323HepG2RPS3
chr2228681082228681135+CDS,intron-Proximal3.994284.16174HepG2PRPF8
chr2228680169228680200+CDS,intron-Proximal3.012355.00024HepG2YBX3
chr2228681011228681060+CDS,intron-Proximal3.548208.10268HepG2AQR
chr2228678769228678788+intron-Proximal3.563083.71919HepG2TIAL1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCL20 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCL20 is not available on ENCORE database.

  • 163 RBPs can affect the levels of CCL20.  








The Knockdown/knockout RNA-Seq assay for CCL20 is not available on ENCORE database.





163 RBPs can affect the gene expression of CCL20 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCL20ENSG00000115009.71029.644002974.23590-1.5304048.1023044.88680HepG2AATF
CCL20ENSG00000115009.7459.951104757.59150-3.37070151.02320146.63560HepG2ABCF1
CCL20ENSG00000115009.71278.239905494.29930-2.10380221.08190218.13540HepG2ACO1
CCL20ENSG00000115009.71771.956102633.89070-0.571906.812705.33510HepG2ADAR
CCL20ENSG00000115009.7578.5566013096.24460-4.50060235.82690232.43780HepG2AKAP1
CCL20ENSG00000115009.72367.672904256.02810-0.846004.086902.82670HepG2AKAP8
CCL20ENSG00000115009.72818.429205520.03430-0.9698046.9245044.41970HepG2AKAP8L
CCL20ENSG00000115009.71404.267103172.19770-1.175707.463104.51040HepG2APOBEC3C
CCL20ENSG00000115009.75747.3260010836.16410-0.9149017.1497015.38170HepG2ASCC1
CCL20ENSG00000115009.77973.328704293.388700.8930022.6152019.24080HepG2ATP5C1
CCL20ENSG00000115009.73335.957001639.986201.0243010.634109.01540HepG2BCLAF1
CCL20ENSG00000115009.74886.231303564.561500.454904.527502.97240HepG2BUD13
CCL20ENSG00000115009.75974.195402607.093301.196209.404208.10630HepG2CALR
CCL20ENSG00000115009.7701.915504187.32810-2.5767014.3203012.24700HepG2CCAR1
CCL20ENSG00000115009.74624.1590010295.06270-1.1547027.8663025.77290HepG2CIRBP
CCL20ENSG00000115009.74080.078805493.01050-0.4290014.1055012.84550HepG2CKAP4
CCL20ENSG00000115009.71814.156503397.10640-0.905006.791305.59420HepG2CNOT7
CCL20ENSG00000115009.72585.161001855.426000.478405.055804.15080HepG2CPSF6
CCL20ENSG00000115009.76352.475603918.066600.6971014.6562012.36210HepG2CPSF7
CCL20ENSG00000115009.73818.537102701.049400.4994010.392108.48290HepG2YBX3
CCL20ENSG00000115009.7337.495101165.90050-1.7885040.9507037.96840HepG2CSTF2
CCL20ENSG00000115009.78111.194104979.018300.704004.494203.71000HepG2CELF1
CCL20ENSG00000115009.713820.416705354.094201.36800153.97380150.43340HepG2DAZAP1
CCL20ENSG00000115009.71340.201005081.39610-1.92280190.27540186.75090HepG2DDX19B
CCL20ENSG00000115009.7305.219903280.16790-3.42580190.28850186.39680HepG2DDX21
CCL20ENSG00000115009.71725.604503210.98790-0.8959021.8635019.58470HepG2DDX24
CCL20ENSG00000115009.7992.559101736.28360-0.806807.598605.58090HepG2DDX27
CCL20ENSG00000115009.73230.749701405.853101.2003024.6902021.56470HepG2DDX28
CCL20ENSG00000115009.73862.6419012545.47180-1.6995052.5147050.12160HepG2DDX3X
CCL20ENSG00000115009.75607.895602507.236701.1613031.2993027.99150HepG2DDX47
CCL20ENSG00000115009.71054.723303572.50460-1.7601013.9113011.30910HepG2DDX52
CCL20ENSG00000115009.71005.367201855.50690-0.884109.138307.82740HepG2DDX55
CCL20ENSG00000115009.715865.1158010776.207100.557905.685004.82700HepG2DDX6
CCL20ENSG00000115009.73255.474602558.024600.347703.495602.39940HepG2DHX30
CCL20ENSG00000115009.7585.764005256.53110-3.1657099999.9999999999.99999HepG2DKC1
CCL20ENSG00000115009.73502.196802628.843200.4137011.5443010.31190HepG2DNAJC2
CCL20ENSG00000115009.7290.061704263.11430-3.8775033.8641031.39230HepG2EEF2
CCL20ENSG00000115009.71536.655403554.58630-1.209906.365404.67420HepG2EFTUD2
CCL20ENSG00000115009.75014.039403021.475000.730605.042303.54260HepG2AGO1
CCL20ENSG00000115009.73183.6736010360.03740-1.7023053.0922050.82100HepG2EIF2S1
CCL20ENSG00000115009.72931.051403609.10090-0.300203.250001.97520HepG2EIF2S2
CCL20ENSG00000115009.7771.698703098.31690-2.0054092.3665088.70430HepG2EIF3G
CCL20ENSG00000115009.72776.2437011449.35320-2.0441061.9098058.95860HepG2EIF4A3
CCL20ENSG00000115009.78528.4676011146.99080-0.386302.453501.80460HepG2EIF4B
CCL20ENSG00000115009.79575.135505281.774600.8582040.9882038.59500HepG2EIF4G1
CCL20ENSG00000115009.71339.801704121.33140-1.6211053.1458049.88520HepG2ESF1
CCL20ENSG00000115009.71941.778704683.05010-1.270102.591102.00580HepG2ETF1
CCL20ENSG00000115009.74422.625805368.82800-0.279702.858502.01020HepG2EWSR1
CCL20ENSG00000115009.71862.430202935.26050-0.656308.400705.61880HepG2EXOSC9
CCL20ENSG00000115009.71308.528803092.58410-1.240908.636506.55180HepG2FAM120A
CCL20ENSG00000115009.71516.532904804.04130-1.6635042.3017040.01510HepG2FIP1L1
CCL20ENSG00000115009.71964.858001544.501800.347202.715301.46040HepG2FKBP4
CCL20ENSG00000115009.73224.040805008.73890-0.635607.234404.64100HepG2FMR1
CCL20ENSG00000115009.73430.410606682.41190-0.9620023.8364021.63820HepG2FUBP3
CCL20ENSG00000115009.7455.824304165.81380-3.1920012.002509.90650HepG2FUS
CCL20ENSG00000115009.73851.6891011551.02770-1.5845048.1999045.74860HepG2FXR1
CCL20ENSG00000115009.71942.6772010715.74000-2.4636093.4384089.95860HepG2G3BP1
CCL20ENSG00000115009.72199.4337011375.52010-2.37070103.5332099.63950HepG2G3BP2
CCL20ENSG00000115009.7362.209903081.76620-3.0889026.0221023.68290HepG2GEMIN5
CCL20ENSG00000115009.7756.703003559.19260-2.233805.491404.04860HepG2GNB2L1
CCL20ENSG00000115009.7639.053402103.15870-1.7185029.2551027.43450HepG2GPKOW
CCL20ENSG00000115009.74050.923805245.42550-0.372808.018306.46860HepG2HDGF
CCL20ENSG00000115009.74815.933302870.935900.746207.072704.82250HepG2HNRNPA0
CCL20ENSG00000115009.7190.965802677.56160-3.80950199.08580195.79750HepG2HNRNPA1
CCL20ENSG00000115009.76899.300604920.359900.487607.834406.40540HepG2HNRNPA2B1
CCL20ENSG00000115009.7574.152002978.32900-2.37500100.8743097.59930HepG2HNRNPC
CCL20ENSG00000115009.78591.7044010849.56470-0.336603.384602.61430HepG2HNRNPK
CCL20ENSG00000115009.710585.473904877.299601.1178028.7536026.85040HepG2HNRNPL
CCL20ENSG00000115009.74394.357302007.093101.130403.691502.97490HepG2HNRNPLL
CCL20ENSG00000115009.7917.767903314.62600-1.8526078.3578074.98920HepG2HNRNPM
CCL20ENSG00000115009.7859.373402958.63530-1.78360116.49270113.43520HepG2HNRNPU
CCL20ENSG00000115009.71876.053701469.281000.352502.629101.92270HepG2IGF2BP1
CCL20ENSG00000115009.73564.5363010892.48210-1.6115050.0467047.61510HepG2IGF2BP2
CCL20ENSG00000115009.76435.8248010221.45360-0.667403.107902.06230HepG2IGF2BP3
CCL20ENSG00000115009.72563.760403022.14180-0.237304.093903.21890HepG2ILF2
CCL20ENSG00000115009.72471.012303235.29250-0.388802.597101.45310HepG2KHDRBS1
CCL20ENSG00000115009.77091.1677010955.66430-0.627606.153604.60240HepG2KHSRP
CCL20ENSG00000115009.76690.629305022.419600.413709.085007.33340HepG2KIF1C
CCL20ENSG00000115009.71797.468204631.69000-1.365606.797304.86210HepG2KRR1
CCL20ENSG00000115009.71740.441504418.18090-1.344006.770605.45620HepG2LARP4
CCL20ENSG00000115009.71257.279403484.88110-1.470803.401302.14470HepG2LARP7
CCL20ENSG00000115009.71351.4784011555.05630-3.09590150.31060145.93200HepG2MAGOH
CCL20ENSG00000115009.73664.1062011619.87340-1.6651044.8223042.53380HepG2MATR3
CCL20ENSG00000115009.7588.382103622.61470-2.6222016.8548014.45080HepG2METAP2
CCL20ENSG00000115009.7686.369203888.14630-2.50200135.57230131.89930HepG2MSI2
CCL20ENSG00000115009.76634.995603264.874401.023004.822603.22260HepG2NAA15
CCL20ENSG00000115009.73340.8943011893.70410-1.8319057.7596055.09630HepG2NCBP2
CCL20ENSG00000115009.73998.518405309.08600-0.409004.583903.60220HepG2NOL12
CCL20ENSG00000115009.7527.712301703.55160-1.6907018.0969015.22260HepG2NONO
CCL20ENSG00000115009.73788.172301779.752701.089702.826602.07000HepG2NSUN2
CCL20ENSG00000115009.75353.832604276.774100.323903.025401.34100HepG2NUP35
CCL20ENSG00000115009.7896.012502587.95350-1.530209.148906.44390HepG2PA2G4
CCL20ENSG00000115009.712073.690803104.432601.959406.214704.84910HepG2PABPC1
CCL20ENSG00000115009.71675.936702928.49650-0.8052017.2156015.43220HepG2PARN
CCL20ENSG00000115009.73627.4929010428.30840-1.5235068.2353065.95760HepG2PCBP1
CCL20ENSG00000115009.76002.098903347.414000.842305.051802.83380HepG2PHF6
CCL20ENSG00000115009.7967.674902862.16260-1.5645011.968809.63060HepG2PKM
CCL20ENSG00000115009.76737.107103046.086101.1451012.198309.27050HepG2PNPT1
CCL20ENSG00000115009.75679.215602638.859901.1057048.9775046.11020HepG2PPIL4
CCL20ENSG00000115009.7620.976104146.58180-2.739309.778207.64700HepG2PRPF6
CCL20ENSG00000115009.7746.207001431.68360-0.9401012.2275010.70180HepG2PRPF8
CCL20ENSG00000115009.72658.4366010611.70980-1.9970079.1466077.17670HepG2PTBP1
CCL20ENSG00000115009.7525.547305067.86850-3.26950213.34860209.24870HepG2PUF60
CCL20ENSG00000115009.71851.247005379.62720-1.53900156.52610153.72120HepG2PUM1
CCL20ENSG00000115009.72025.345505596.28640-1.46630119.71250116.96630HepG2PUS1
CCL20ENSG00000115009.76073.2377011491.64400-0.9200024.7762023.16630HepG2QKI
CCL20ENSG00000115009.711193.461403807.456701.5557020.1522018.42110HepG2RAVER1
CCL20ENSG00000115009.73684.241605850.56840-0.6672015.1888013.44320HepG2RBM15
CCL20ENSG00000115009.7699.684103914.39780-2.484005.853405.16970HepG2RBM22
CCL20ENSG00000115009.714848.4572010429.821100.509509.376608.19030HepG2RBM25
CCL20ENSG00000115009.71319.098804201.83750-1.671503.529702.40220HepG2RBM27
CCL20ENSG00000115009.76403.850803792.191200.755804.290101.75820HepG2RBM34
CCL20ENSG00000115009.72178.413803280.48610-0.590604.548702.59790HepG2RBM47
CCL20ENSG00000115009.7346.7545011809.38540-5.0899099999.9999999999.99999HepG2NELFE
CCL20ENSG00000115009.71800.9681010999.61530-2.61060138.27890135.39690HepG2RECQL
CCL20ENSG00000115009.7932.192101607.25680-0.7859011.8725010.63070HepG2RPLP0
CCL20ENSG00000115009.75854.079303737.552600.647202.938401.96710HepG2RPS10
CCL20ENSG00000115009.7136.055903367.42430-4.6294045.7354043.79990HepG2RPS19
CCL20ENSG00000115009.71377.509003875.84360-1.492403.332902.45490HepG2RPS2
CCL20ENSG00000115009.72615.984303409.60540-0.382302.317501.58320HepG2RPS3A
CCL20ENSG00000115009.73103.756201416.261801.1318011.070509.66350HepG2RRP9
CCL20ENSG00000115009.73224.434802634.774000.291303.730603.00220HepG2SAFB2
CCL20ENSG00000115009.76704.551703210.781801.0621016.1533013.29330HepG2SART3
CCL20ENSG00000115009.71299.800706331.73630-2.2843024.6547022.59070HepG2SF3A3
CCL20ENSG00000115009.76832.384201986.561501.7820011.5389010.19130HepG2SF3B1
CCL20ENSG00000115009.75907.2412011047.23430-0.9031023.3134021.87950HepG2SF3B4
CCL20ENSG00000115009.77536.036704859.010400.6330031.4779029.63150HepG2SLBP
CCL20ENSG00000115009.72315.290203072.55530-0.408205.587204.72460HepG2SMN1
CCL20ENSG00000115009.77321.181103874.726900.917908.944207.16760HepG2SMNDC1
CCL20ENSG00000115009.71290.126704421.58280-1.777103.889503.32560HepG2SRFBP1
CCL20ENSG00000115009.72946.111401767.380100.737106.218403.93770HepG2SRP68
CCL20ENSG00000115009.7675.1422011531.29860-4.09420268.54740265.91660HepG2SRSF1
CCL20ENSG00000115009.73647.612002137.729600.770803.987802.76240HepG2SRSF3
CCL20ENSG00000115009.74168.718905003.61530-0.263401.907501.37470HepG2SRSF5
CCL20ENSG00000115009.72689.178101465.903100.8753031.3101029.47710HepG2SRSF7
CCL20ENSG00000115009.711706.706509381.650900.319308.212807.35200HepG2SRSF9
CCL20ENSG00000115009.7104.710503839.70460-5.1965014.7118013.71790HepG2SSB
CCL20ENSG00000115009.712928.549603557.781801.8614030.6517027.24540HepG2SUB1
CCL20ENSG00000115009.71638.112705690.63180-1.79660184.54940181.36060HepG2SUCLG1
CCL20ENSG00000115009.79205.292704676.306400.977003.091401.68640HepG2SUGP2
CCL20ENSG00000115009.71756.719403243.97840-0.8849021.3896019.04130HepG2SUPT6H
CCL20ENSG00000115009.7838.873401847.21840-1.1388016.3147014.91390HepG2SUPV3L1
CCL20ENSG00000115009.71435.9322010365.82880-2.85180148.98580145.60940HepG2TAF15
CCL20ENSG00000115009.76062.109801956.589301.6314057.7757055.28170HepG2TARDBP
CCL20ENSG00000115009.71143.235404534.92070-1.9880012.2319010.17580HepG2TBRG4
CCL20ENSG00000115009.74519.143301238.180501.8677053.8186050.67820HepG2TFIP11
CCL20ENSG00000115009.75616.297209523.67250-0.7619012.9219011.14720HepG2TIA1
CCL20ENSG00000115009.7632.574902874.72940-2.18410112.47550110.19810HepG2TIAL1
CCL20ENSG00000115009.71258.357902750.48670-1.128106.997004.66550HepG2TROVE2
CCL20ENSG00000115009.73333.941104109.58470-0.301802.514001.91340HepG2U2AF1
CCL20ENSG00000115009.72860.062101091.270201.3899032.5855030.13970HepG2UCHL5
CCL20ENSG00000115009.73558.470905615.31110-0.658105.715004.76850HepG2UPF1
CCL20ENSG00000115009.72303.252805771.53680-1.3253010.820008.92180HepG2UTP18
CCL20ENSG00000115009.71315.645405421.31780-2.0429025.6521024.11000HepG2UTP3
CCL20ENSG00000115009.71570.060204185.84750-1.414704.471103.13740HepG2XRCC6
CCL20ENSG00000115009.7285.967901818.38120-2.6687085.3456082.08940HepG2XRN2
CCL20ENSG00000115009.7513.158301448.38990-1.497005.209804.33680HepG2ZC3H8
CCL20ENSG00000115009.715421.393106175.726301.3202020.6134019.46120HepG2ZNF622
CCL20ENSG00000115009.70.0000018.29180-99999.999995.486304.37020K562MTPAP
CCL20ENSG00000115009.74.8997020.32880-2.052802.097801.43810K562NSUN2
CCL20ENSG00000115009.70.0000018.74530-99999.999995.782403.20840K562NUFIP2
CCL20ENSG00000115009.70.8383020.05200-4.580104.904103.84490K562SF3A3
CCL20ENSG00000115009.70.0000020.54310-99999.999996.517105.15140K562SRPK2
CCL20ENSG00000115009.70.0000021.55460-99999.999997.181406.08710K562UPF1
CCL20ENSG00000115009.70.0000018.44430-99999.999995.805004.51390K562WDR3
CCL20ENSG00000115009.70.0000019.17550-99999.999996.322405.09310K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCL20 is not available on ENCORE database.





1 RBPs can affect the splicing of CCL20 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
MXECCL20ENSG00000115009.7chr2+2286801692286802842286810222286811002286785692286787032286817772286822500.079000.004790.061981includedHepG2HNRNPUL1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCL20 is not avaliable on ENCORE database.