CCDC47

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC47	ENSG00000108588.13	68.07	55.41	61.74	ENCSR000AEF
HepG2	CCDC47	ENSG00000108588.13	74.53	92.21	83.37	ENCSR985KAT
K562	CCDC47	ENSG00000108588.13	102.54	109.03	105.78	ENCSR000AEO

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	CCDC47-BGHcLV27-HepG2	ENCSR583SHC	CCDC47	HepG2	Released		ENCSR650TTU	CRISPR	KD% = 81.1,66.9

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CCDC47	ENCAB491CRC	A305-100A	1			Released, ENCODE4		BGKcLV35-9, Experimented, ENCORE2
CCDC47	ENCAB605JXH	A305-101A	1			Released, ENCODE4

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
CCDC47	K562	CRISPR			BGKcLV26-63,BGKcLV26-64	BGKcLV26-1,BGKcLV26-2	0.0,0.0	NotSatisfied	ENCODE4
CCDC47	K562	CRISPR			CCDC47-BGKcLV35-9,CCDC47-BGKcLV35-10	NT-BGKcLV35-1,NT-BGKcLV35-2	50.6,58.7	Submitting	ENCORE2
CCDC47	HepG2	CRISPR	ENCSR583SHC	ENCSR650TTU	CCDC47-BGHcLV27-45,CCDC47-BGHcLV27-46	NT-BGHcLV27-1,NT-BGHcLV27-2	81.1,66.9	Released	ENCODE4

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC47 is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC47 RNA is bound by 32 proteins.

eCLIP assay for CCDC47 is not avaliable on ENCORE database.

32 proteins are bound to CCDC47 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	61823287	61823321	-	3'-UTR,intron-Distal	5.02714	14.70754	HepG2	LIN28B
chr17	61822962	61823061	-	3'-UTR,intron-Distal	3.71903	17.11974	HepG2	DDX55
chr17	61822965	61823048	-	3'-UTR,intron-Distal	4.02549	17.76642	HepG2	LARP4
chr17	61823321	61823347	-	3'-UTR,intron-Distal	6.13816	61.80292	HepG2	LIN28B
chr17	61823289	61823341	-	3'-UTR,intron-Distal	8.46205	115.04786	K562	LIN28B
chr17	61822956	61823056	-	3'-UTR,intron-Distal	3.48757	26.14183	K562	GTF2F1
chr17	61822945	61823042	-	3'-UTR,intron-Distal	3.55723	34.42039	K562	FAM120A
chr17	61822980	61823055	-	3'-UTR,intron-Distal	3.18048	28.87296	K562	PABPC4
chr17	61824108	61824169	-	3'-UTR,intron-Distal	3.88136	10.05563	HepG2	BCLAF1
chr17	61822937	61823039	-	3'-UTR,intron-Distal	3.84336	20.11868	K562	TIA1
chr17	61823029	61823060	-	3'-UTR,intron-Distal	3.78139	9.32772	HepG2	PRPF4
chr17	61824170	61824266	-	3'-UTR,CDS,intron-Distal	3.40280	7.60260	K562	ZNF622
chr17	61824168	61824247	-	3'-UTR,CDS,intron-Distal	3.50619	8.31377	HepG2	GRWD1
chr17	61822978	61823051	-	3'-UTR,intron-Distal	3.01541	8.38227	K562	DDX55
chr17	61843438	61843540	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.01157	4.08606	HepG2	ZNF800
chr17	61822981	61823039	-	3'-UTR,intron-Distal	3.57804	4.43069	HepG2	TIA1
chr17	61822961	61823029	-	3'-UTR,intron-Distal	4.83127	19.48885	HepG2	PRPF4
chr17	61823386	61823536	-	3'-UTR,intron-Distal	3.03129	8.79992	K562	KHSRP
chr17	61822963	61823037	-	3'-UTR,intron-Distal	3.44940	9.02812	HepG2	DDX6
chr17	61823347	61823367	-	3'-UTR,intron-Distal	5.95213	49.82584	HepG2	LIN28B
chr17	61824227	61824272	-	3'-UTR,CDS,intron-Distal	5.21707	15.62471	HepG2	BCLAF1
chr17	61824186	61824240	-	3'-UTR,intron-Distal	3.92810	9.17402	K562	UCHL5
chr17	61822944	61823048	-	3'-UTR,intron-Distal	3.33117	4.58235	HepG2	FAM120A
chr17	61843415	61843542	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.18960	10.28904	HepG2	GRWD1
chr17	61822957	61823060	-	3'-UTR,intron-Distal	4.88769	10.58113	HepG2	TIAL1
chr17	61822977	61823036	-	3'-UTR,intron-Distal	3.86044	7.40396	K562	APOBEC3C
chr17	61823341	61823388	-	3'-UTR,intron-Distal	7.42079	112.30929	K562	LIN28B
chr17	61822971	61823053	-	3'-UTR,intron-Distal	3.12849	11.32916	HepG2	GTF2F1
chr17	61824169	61824227	-	3'-UTR,intron-Distal	4.42758	15.91092	HepG2	BCLAF1
chr17	61850776	61850826	-	5'-UTR,intron-Distal	4.48074	4.46345	K562	GEMIN5
chr17	61850769	61850868	-	5'-UTR,intron-Distal	4.22673	48.39007	HepG2	DDX3X
chr17	61850868	61850930	-	5'-UTR,intron-Distal,intron-Proximal	4.06070	26.83348	HepG2	DDX3X
chr17	61850861	61850925	-	5'-UTR,intron-Distal,intron-Proximal	3.13268	11.34716	K562	DDX3X
chr17	61850768	61850800	-	5'-UTR,intron-Distal	3.59978	8.67207	K562	DDX3X
chr17	61850800	61850861	-	5'-UTR,intron-Distal	3.24057	12.85699	K562	DDX3X
chr17	61841507	61841552	-	CDS,intron-Distal,intron-Proximal	4.03248	5.46429	HepG2	ZNF800
chr17	61838272	61838323	-	CDS,intron-Distal,intron-Proximal	4.81342	22.81761	HepG2	SND1
chr17	61841514	61841550	-	CDS,intron-Distal	3.73675	10.37681	HepG2	BCLAF1
chr17	61842098	61842113	-	CDS,intron-Distal,intron-Proximal	5.00624	6.24559	HepG2	ZNF800
chr17	61833833	61833913	-	CDS,intron-Distal	6.17020	36.67297	K562	SND1
chr17	61824277	61824324	-	CDS,intron-Distal	3.31184	6.73967	K562	ZNF622
chr17	61841451	61841506	-	CDS,intron-Distal	3.67214	19.84070	K562	SND1
chr17	61843431	61843461	-	CDS,intron-Distal,intron-Proximal	3.51012	9.67260	HepG2	BCLAF1
chr17	61842153	61842199	-	CDS,intron-Distal	4.10415	13.09306	K562	ZNF622
chr17	61843351	61843397	-	CDS,intron-Distal,intron-Proximal	3.65155	5.99043	HepG2	GRWD1
chr17	61842112	61842167	-	CDS,intron-Distal	3.29195	6.21281	HepG2	GRWD1
chr17	61838273	61838321	-	CDS,intron-Distal,intron-Proximal	5.41724	28.28657	K562	SND1
chr17	61841415	61841472	-	CDS,intron-Distal	3.60979	11.34372	HepG2	BCLAF1
chr17	61838666	61838710	-	CDS,intron-Distal	3.96464	5.97027	HepG2	GRWD1
chr17	61838274	61838326	-	CDS,intron-Distal	3.57665	12.42637	HepG2	BCLAF1
chr17	61843270	61843344	-	CDS,intron-Distal,intron-Proximal	4.21311	16.97654	K562	ZNF622
chr17	61843305	61843333	-	CDS,intron-Distal	3.29372	3.57831	HepG2	SND1
chr17	61838272	61838341	-	CDS,intron-Distal,intron-Proximal	3.20494	5.77687	HepG2	PPIG
chr17	61838697	61838711	-	CDS,intron-Distal	4.02818	3.30795	HepG2	SND1
chr17	61824273	61824324	-	CDS,intron-Distal	4.17483	4.83483	HepG2	FXR2
chr17	61838587	61838650	-	CDS,intron-Distal,intron-Proximal	5.63704	49.11670	K562	SND1
chr17	61838321	61838391	-	CDS,intron-Distal,intron-Proximal	5.57070	17.08395	K562	SF3B4
chr17	61842199	61842207	-	CDS,intron-Distal	5.94017	11.31313	K562	ZNF622
chr17	61843271	61843302	-	CDS,intron-Distal,intron-Proximal	3.99599	7.05856	K562	ZNF800
chr17	61830129	61830168	-	CDS,intron-Distal,intron-Proximal	3.66468	4.97821	K562	BUD13
chr17	61829294	61829346	-	CDS,intron-Distal,intron-Proximal	3.57390	7.85158	K562	UCHL5
chr17	61841475	61841501	-	CDS,intron-Distal	3.60021	3.57831	HepG2	SND1
chr17	61838321	61838339	-	CDS,intron-Distal	4.31621	14.71838	K562	SND1
chr17	61838325	61838339	-	CDS,intron-Distal	3.06586	4.29277	HepG2	GRWD1
chr17	61842099	61842107	-	CDS,intron-Distal,intron-Proximal	3.64075	9.21802	K562	SND1
chr17	61838589	61838666	-	CDS,intron-Distal,intron-Proximal	3.07978	7.19099	HepG2	GRWD1
chr17	61838326	61838339	-	CDS,intron-Distal	3.98907	6.92877	HepG2	SND1
chr17	61841410	61841453	-	CDS,intron-Distal	3.12062	3.87559	K562	YBX3
chr17	61829298	61829340	-	CDS,intron-Distal,intron-Proximal	4.00418	5.97027	HepG2	GRWD1
chr17	61838680	61838710	-	CDS,intron-Distal	3.93844	8.08603	HepG2	BCLAF1
chr17	61842169	61842207	-	CDS,intron-Distal	3.71606	3.80897	HepG2	FXR2
chr17	61838276	61838320	-	CDS,intron-Distal	3.43719	4.62153	HepG2	LIN28B
chr17	61833833	61833884	-	CDS,intron-Distal	5.44120	16.75285	HepG2	SND1
chr17	61838674	61838697	-	CDS,intron-Distal	3.66767	3.98500	HepG2	SND1
chr17	61841472	61841503	-	CDS,intron-Distal	3.80418	8.66838	HepG2	BCLAF1
chr17	61830100	61830105	-	CDS,intron-Distal,intron-Proximal	3.36722	3.30795	HepG2	SND1
chr17	61824252	61824324	-	CDS,intron-Distal	3.47466	11.20074	K562	UCHL5
chr17	61841387	61841409	-	CDS,intron-Distal	4.59938	21.57380	K562	SND1
chr17	61843271	61843289	-	CDS,intron-Distal,intron-Proximal	4.00714	4.67599	HepG2	SND1
chr17	61824277	61824370	-	CDS,intron-Distal	3.91196	7.61055	K562	U2AF2
chr17	61833677	61833709	-	CDS,intron-Distal	4.41797	9.85325	K562	SND1
chr17	61841375	61841387	-	CDS,intron-Distal,intron-Proximal	4.59296	20.27144	K562	SND1
chr17	61843271	61843297	-	CDS,intron-Distal,intron-Proximal	4.15557	13.42460	HepG2	BCLAF1
chr17	61824272	61824324	-	CDS,intron-Distal	4.06102	13.38279	HepG2	BCLAF1
chr17	61838273	61838346	-	CDS,intron-Distal,intron-Proximal	3.29963	4.28417	K562	U2AF2
chr17	61841513	61841550	-	CDS,intron-Distal	4.79345	6.94886	HepG2	GRWD1
chr17	61829298	61829334	-	CDS,intron-Distal,intron-Proximal	5.92259	12.88829	HepG2	BCLAF1
chr17	61831792	61831806	-	CDS,intron-Distal,intron-Proximal	4.65970	5.24633	HepG2	SND1
chr17	61842098	61842113	-	CDS,intron-Distal,intron-Proximal	3.81936	9.74534	HepG2	BCLAF1
chr17	61838654	61838711	-	CDS,intron-Distal	4.22280	24.28927	K562	SND1
chr17	61833618	61833706	-	CDS,intron-Distal	3.90246	4.33455	K562	LIN28B
chr17	61841409	61841451	-	CDS,intron-Distal	4.01038	21.97918	K562	SND1
chr17	61841506	61841530	-	CDS,intron-Distal	4.49866	18.19752	K562	SND1
chr17	61833828	61833833	-	CDS,intron-Distal,intron-Proximal	5.35068	7.52455	K562	SND1
chr17	61838282	61838321	-	CDS,intron-Distal	3.23972	5.37841	K562	SF3B4
chr17	61830019	61830103	-	CDS,intron-Distal,intron-Proximal	3.84189	11.81659	K562	AQR
chr17	61838282	61838344	-	CDS,intron-Distal,intron-Proximal	3.34463	8.16546	K562	BUD13
chr17	61843461	61843517	-	CDS,intron-Distal,intron-Proximal	3.36972	15.67236	HepG2	BCLAF1
chr17	61843297	61843321	-	CDS,intron-Distal	3.93582	6.06436	HepG2	BCLAF1
chr17	61842172	61842208	-	CDS,intron-Distal,intron-Proximal	4.07999	11.16705	K562	UCHL5
chr17	61838326	61838339	-	CDS,intron-Distal	3.15283	4.89002	HepG2	BCLAF1
chr17	61842168	61842210	-	CDS,intron-Distal,intron-Proximal	5.10191	8.38780	K562	BUD13
chr17	61842168	61842208	-	CDS,intron-Distal,intron-Proximal	3.99221	13.65695	HepG2	BCLAF1
chr17	61830128	61830158	-	CDS,intron-Distal,intron-Proximal	4.43597	4.06516	HepG2	SND1
chr17	61829299	61829355	-	CDS,intron-Distal,intron-Proximal	3.38838	4.48452	HepG2	FXR2
chr17	61829297	61829360	-	CDS,intron-Distal,intron-Proximal	3.09459	9.72347	K562	ZNF622
chr17	61841390	61841441	-	CDS,intron-Distal	4.21125	6.36878	HepG2	SND1
chr17	61843271	61843296	-	CDS,intron-Distal,intron-Proximal	3.16839	10.18952	K562	UCHL5
chr17	61838277	61838353	-	CDS,intron-Distal,intron-Proximal	3.53160	10.23609	HepG2	BUD13
chr17	61838280	61838325	-	CDS,intron-Distal	3.33478	8.50585	HepG2	GRWD1
chr17	61842173	61842209	-	CDS,intron-Distal,intron-Proximal	3.60441	5.67153	K562	ZNF800
chr17	61841375	61841390	-	CDS,intron-Distal,intron-Proximal	5.56338	6.43734	HepG2	SND1
chr17	61842118	61842168	-	CDS,intron-Distal	3.94095	6.60968	K562	BUD13
chr17	61842050	61842126	-	CDS,intron-Distal,intron-Proximal	3.67691	8.79725	K562	PRPF8
chr17	61838573	61838637	-	CDS,intron-Distal,intron-Proximal	3.79588	5.43815	HepG2	PRPF8
chr17	61824262	61824323	-	CDS,intron-Distal	3.77231	10.29040	K562	ZNF800
chr17	61841509	61841549	-	CDS,intron-Distal	4.84403	9.50780	HepG2	SND1
chr17	61842167	61842208	-	CDS,intron-Distal,intron-Proximal	3.65293	6.18332	HepG2	GRWD1
chr17	61838588	61838649	-	CDS,intron-Distal,intron-Proximal	6.19315	26.46037	HepG2	SND1
chr17	61829776	61829789	-	CDS,intron-Distal	3.00752	3.41665	HepG2	GRWD1
chr17	61841372	61841398	-	CDS,intron-Distal,intron-Proximal	3.29584	4.58459	K562	GRWD1
chr17	61842099	61842112	-	CDS,intron-Distal,intron-Proximal	3.00653	3.89474	HepG2	GRWD1
chr17	61842113	61842168	-	CDS,intron-Distal	3.99221	13.65695	HepG2	BCLAF1
chr17	61833611	61833677	-	CDS,intron-Distal	3.66190	7.50303	K562	UCHL5
chr17	61830024	61830106	-	CDS,intron-Distal,intron-Proximal	3.23793	8.30488	K562	PRPF8
chr17	61841351	61841400	-	CDS,intron-Distal,intron-Proximal	3.80663	3.05875	K562	RBM15
chr17	61843311	61843348	-	CDS,intron-Distal	4.02940	4.01886	HepG2	LIN28B
chr17	61833688	61833730	-	CDS,intron-Distal,intron-Proximal	5.15443	6.84553	HepG2	U2AF2
chr17	61841425	61841484	-	CDS,intron-Distal	3.13282	4.56061	K562	BUD13
chr17	61830137	61830154	-	CDS,intron-Distal,intron-Proximal	3.89723	4.98210	K562	SND1
chr17	61833620	61833681	-	CDS,intron-Distal	3.60702	9.80088	HepG2	LIN28B
chr17	61843349	61843403	-	CDS,intron-Distal,intron-Proximal	3.40053	8.15265	K562	UCHL5
chr17	61841530	61841551	-	CDS,intron-Distal,intron-Proximal	4.06795	17.04714	K562	SND1
chr17	61829730	61829790	-	CDS,intron-Distal,intron-Proximal	3.45218	6.50171	HepG2	SND1
chr17	61836115	61836140	-	intron-Distal	3.45255	5.01093	HepG2	QKI
chr17	61843024	61843072	-	intron-Distal,intron-Proximal	4.26118	3.87294	K562	TARDBP
chr17	61842805	61842848	-	intron-Distal	3.33615	4.16402	K562	TARDBP
chr17	61838502	61838560	-	intron-Distal,intron-Proximal	4.46939	4.96013	K562	PRPF8
chr17	61843196	61843272	-	intron-Distal,intron-Proximal	4.45300	10.54823	K562	AQR
chr17	61836050	61836152	-	intron-Distal	8.03032	45.45731	K562	QKI
chr17	61847711	61847890	-	intron-Distal	3.22034	3.72310	K562	HNRNPK
chr17	61850719	61850772	-	intron-Distal	4.96454	5.17615	K562	AQR
chr17	61842273	61842376	-	intron-Distal,intron-Proximal	3.04024	3.76473	K562	KHSRP
chr17	61831710	61831766	-	intron-Distal,intron-Proximal	4.42441	7.53589	K562	AQR
chr17	61842437	61842507	-	intron-Distal	5.56620	13.70780	K562	TARDBP
chr17	61831683	61831773	-	intron-Distal,intron-Proximal	4.87688	12.63563	K562	PRPF8
chr17	61836068	61836115	-	intron-Distal	5.42507	19.19025	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CCDC47 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC47 is not available on ENCORE database.
99 RBPs can affect the levels of CCDC47.

The Knockdown/knockout RNA-Seq assay for CCDC47 is not available on ENCORE database.

99 RBPs can affect the gene expression of CCDC47 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC47	ENSG00000108588.9	3072.60920	4294.09590	-0.48290	4.95040	3.91430	HepG2	ASCC1
CCDC47	ENSG00000108588.9	2550.57890	3393.55430	-0.41200	4.67330	2.89560	HepG2	ATP5C1
CCDC47	ENSG00000108588.9	2151.58970	2947.26040	-0.45400	2.56640	1.66640	HepG2	BCCIP
CCDC47	ENSG00000108588.9	5330.50740	3423.74720	0.63860	6.55060	5.43000	HepG2	CALR
CCDC47	ENSG00000108588.9	3124.28050	4079.67610	-0.38490	3.47660	2.61640	HepG2	CIRBP
CCDC47	ENSG00000108588.9	1503.10970	2727.49800	-0.85960	7.31410	6.07620	HepG2	CNOT7
CCDC47	ENSG00000108588.9	4138.22010	3147.64300	0.39460	3.93740	3.13080	HepG2	CPSF6
CCDC47	ENSG00000108588.9	3131.51140	4284.52270	-0.45230	14.16890	12.71230	HepG2	DAZAP1
CCDC47	ENSG00000108588.9	2872.73540	3281.52610	-0.19190	2.66550	1.84560	HepG2	DDX19B
CCDC47	ENSG00000108588.9	1509.25310	2808.26390	-0.89580	18.33270	16.78210	HepG2	DDX21
CCDC47	ENSG00000108588.9	3309.91850	2747.50140	0.26860	2.55060	1.67650	HepG2	DDX24
CCDC47	ENSG00000108588.9	1487.71950	2195.66590	-0.56160	3.95540	2.29530	HepG2	DDX28
CCDC47	ENSG00000108588.9	1608.38130	2240.26580	-0.47810	6.17670	4.25320	HepG2	DDX52
CCDC47	ENSG00000108588.9	1999.21410	2897.61580	-0.53540	3.85980	2.96160	HepG2	DDX55
CCDC47	ENSG00000108588.9	2349.01310	3394.62120	-0.53120	13.45040	12.18700	HepG2	DKC1
CCDC47	ENSG00000108588.9	2092.87390	2488.27930	-0.24970	2.79990	2.09390	HepG2	DNAJC21
CCDC47	ENSG00000108588.9	1794.55400	2466.35440	-0.45880	11.59420	10.35920	HepG2	DNAJC2
CCDC47	ENSG00000108588.9	2157.27090	2673.03710	-0.30930	2.23380	1.40400	HepG2	EEF2
CCDC47	ENSG00000108588.9	2847.36400	2169.98170	0.39180	3.60040	2.57660	HepG2	EIF3D
CCDC47	ENSG00000108588.9	4161.36180	4902.88540	-0.23660	3.37460	2.72040	HepG2	ETF1
CCDC47	ENSG00000108588.9	1511.87340	3467.15800	-1.19740	35.84030	33.26430	HepG2	EWSR1
CCDC47	ENSG00000108588.9	1851.77090	2512.12860	-0.44000	4.09000	2.01390	HepG2	EXOSC9
CCDC47	ENSG00000108588.9	2347.42020	3797.05420	-0.69380	7.93590	6.70730	HepG2	FIP1L1
CCDC47	ENSG00000108588.9	3476.18110	4577.43570	-0.39700	3.60180	2.81890	HepG2	FXR1
CCDC47	ENSG00000108588.9	1661.62170	4246.36990	-1.35360	28.95300	26.87970	HepG2	G3BP1
CCDC47	ENSG00000108588.9	1419.84950	1932.10950	-0.44440	4.03630	2.94170	HepG2	GEMIN5
CCDC47	ENSG00000108588.9	5038.31260	3568.01700	0.49770	4.88790	4.05310	HepG2	GPKOW
CCDC47	ENSG00000108588.9	2946.46110	3387.45850	-0.20120	2.41140	1.49200	HepG2	HDGF
CCDC47	ENSG00000108588.9	1374.85730	2512.11820	-0.86960	17.29570	15.90690	HepG2	HNRNPA1
CCDC47	ENSG00000108588.9	3282.96090	4299.53750	-0.38920	3.97190	3.14950	HepG2	HNRNPK
CCDC47	ENSG00000108588.9	5029.85400	3405.03170	0.56270	7.19070	6.23040	HepG2	HNRNPLL
CCDC47	ENSG00000108588.9	1672.93530	2619.89120	-0.64710	10.94920	9.28820	HepG2	HNRNPM
CCDC47	ENSG00000108588.9	2024.26300	2775.80750	-0.45550	9.95990	8.86740	HepG2	HNRNPU
CCDC47	ENSG00000108588.9	2482.59480	2835.39280	-0.19170	2.87210	2.12740	HepG2	ILF2
CCDC47	ENSG00000108588.9	1605.36360	2271.13210	-0.50050	2.51900	1.51230	HepG2	METAP2
CCDC47	ENSG00000108588.9	3134.50190	2580.56570	0.28040	2.47830	1.33150	HepG2	NAA15
CCDC47	ENSG00000108588.9	3555.71640	4713.19870	-0.40660	3.43880	2.73580	HepG2	NCBP2
CCDC47	ENSG00000108588.9	3649.28610	3019.27110	0.27330	2.25500	1.57800	HepG2	NSUN2
CCDC47	ENSG00000108588.9	2223.58330	2747.55450	-0.30530	4.60660	3.54580	HepG2	PARN
CCDC47	ENSG00000108588.9	1157.41760	1794.50800	-0.63270	10.69130	8.48220	HepG2	PKM
CCDC47	ENSG00000108588.9	3356.75150	2362.46390	0.50670	12.30180	10.84290	HepG2	PRPF4
CCDC47	ENSG00000108588.9	1307.55230	2236.10860	-0.77410	6.20280	5.04420	HepG2	PRPF8
CCDC47	ENSG00000108588.9	2632.77100	4260.24950	-0.69440	23.20840	21.91640	HepG2	PTBP1
CCDC47	ENSG00000108588.9	3137.05230	4055.57670	-0.37050	4.27510	3.55320	HepG2	PUF60
CCDC47	ENSG00000108588.9	2956.09870	4305.16250	-0.54240	21.30110	19.96880	HepG2	PUM1
CCDC47	ENSG00000108588.9	5046.67420	4302.02480	0.23020	2.38600	1.76270	HepG2	PUM2
CCDC47	ENSG00000108588.9	3093.12160	3614.02870	-0.22450	3.47480	2.80210	HepG2	PUS1
CCDC47	ENSG00000108588.9	3479.57020	4613.74200	-0.40700	6.73700	5.82480	HepG2	QKI
CCDC47	ENSG00000108588.9	1770.64150	2398.24740	-0.43770	3.46540	1.52200	HepG2	RBM14
CCDC47	ENSG00000108588.9	3732.51100	4518.80180	-0.27580	2.97900	2.09160	HepG2	RBM15
CCDC47	ENSG00000108588.9	4837.16650	4097.94750	0.23920	3.04460	2.50850	HepG2	RBM22
CCDC47	ENSG00000108588.9	3177.90450	4741.16540	-0.57720	17.06820	15.94550	HepG2	NELFE
CCDC47	ENSG00000108588.9	3265.45790	4415.90220	-0.43540	10.35870	9.28040	HepG2	RECQL
CCDC47	ENSG00000108588.9	2427.74880	3441.18360	-0.50330	3.14500	1.51700	HepG2	RTF1
CCDC47	ENSG00000108588.9	2871.57850	2471.97010	0.21610	3.12330	2.44730	HepG2	SAFB2
CCDC47	ENSG00000108588.9	2951.33640	4435.29010	-0.58770	17.86540	16.56440	HepG2	SF3B4
CCDC47	ENSG00000108588.9	2361.62460	2882.71920	-0.28770	5.93690	5.05030	HepG2	SMN1
CCDC47	ENSG00000108588.9	3389.10810	4628.55610	-0.44970	11.44470	10.61410	HepG2	SRFBP1
CCDC47	ENSG00000108588.9	3967.71290	4629.55590	-0.22260	3.46280	2.94930	HepG2	SRSF1
CCDC47	ENSG00000108588.9	2663.51570	3073.21900	-0.20640	2.31850	1.67640	HepG2	SRSF7
CCDC47	ENSG00000108588.9	3661.95620	4553.97850	-0.31450	7.27210	6.34460	HepG2	SUCLG1
CCDC47	ENSG00000108588.9	1471.87630	2884.77320	-0.97080	9.41420	8.29120	HepG2	SUPV3L1
CCDC47	ENSG00000108588.9	3547.88660	4161.42870	-0.23010	2.72040	2.16430	HepG2	TAF15
CCDC47	ENSG00000108588.9	1924.46450	2697.15660	-0.48700	7.76510	7.00500	HepG2	TIAL1
CCDC47	ENSG00000108588.9	1867.16040	2642.20490	-0.50090	2.35020	1.43190	HepG2	UPF2
CCDC47	ENSG00000108588.9	3239.68700	4304.57880	-0.41000	8.34970	6.64460	HepG2	UTP18
CCDC47	ENSG00000108588.9	3623.52170	4043.27360	-0.15810	2.02660	1.49760	HepG2	UTP3
CCDC47	ENSG00000108588.9	2470.28610	3478.80380	-0.49390	3.32850	2.16360	HepG2	XRCC6
CCDC47	ENSG00000108588.9	1863.53040	2839.73560	-0.60770	4.46070	3.54760	HepG2	XRN2
CCDC47	ENSG00000108588.9	1818.77200	2331.37340	-0.35820	6.88460	5.90290	HepG2	ZC3H8
CCDC47	ENSG00000108588.9	3612.49410	4789.18860	-0.40680	9.71650	8.73590	K562	AGGF1
CCDC47	ENSG00000108588.9	4317.98850	5262.29890	-0.28530	2.70860	1.74010	K562	AKAP8
CCDC47	ENSG00000108588.9	3799.22020	4983.29510	-0.39140	4.59470	3.74560	K562	AKAP8L
CCDC47	ENSG00000108588.9	3449.39780	6699.52030	-0.95770	21.90750	20.43390	K562	AQR
CCDC47	ENSG00000108588.9	2202.63020	2715.23410	-0.30180	4.45980	1.78980	K562	ASCC1
CCDC47	ENSG00000108588.9	3687.49830	5228.53880	-0.50380	10.97300	8.99580	K562	ATP5C1
CCDC47	ENSG00000108588.9	2746.80840	3855.34790	-0.48910	5.52400	4.28080	K562	BOP1
CCDC47	ENSG00000108588.9	1111.83150	1562.87110	-0.49130	2.69360	1.65650	K562	CCAR1
CCDC47	ENSG00000108588.9	3351.97160	4593.00010	-0.45440	5.49350	3.70500	K562	CIRBP
CCDC47	ENSG00000108588.9	3676.70840	6782.19580	-0.88330	2.32570	1.36780	K562	CNOT7
CCDC47	ENSG00000108588.9	3558.59670	4099.98270	-0.20430	2.53250	1.37590	K562	DDX21
CCDC47	ENSG00000108588.9	2520.78530	3409.98800	-0.43590	4.08100	1.55830	K562	DDX28
CCDC47	ENSG00000108588.9	2000.50350	2815.52280	-0.49300	6.95010	5.19940	K562	DDX3X
CCDC47	ENSG00000108588.9	7633.79620	6287.92340	0.27970	5.09230	4.24600	K562	DDX47
CCDC47	ENSG00000108588.9	4325.55580	3693.58570	0.22780	2.46950	1.71700	K562	EIF3G
CCDC47	ENSG00000108588.9	2310.24460	2941.49680	-0.34850	3.41480	2.50690	K562	EIF4A3
CCDC47	ENSG00000108588.9	3100.82770	4920.01150	-0.66600	10.98070	9.16640	K562	FIP1L1
CCDC47	ENSG00000108588.9	3957.36560	3059.02780	0.37140	6.53070	5.65700	K562	FXR1
CCDC47	ENSG00000108588.9	3227.18560	4097.10410	-0.34430	3.79170	2.08440	K562	G3BP1
CCDC47	ENSG00000108588.9	4217.71810	3228.44950	0.38550	2.49180	1.82630	K562	G3BP2
CCDC47	ENSG00000108588.9	4761.23810	7095.08890	-0.57550	10.32710	8.84310	K562	GRSF1
CCDC47	ENSG00000108588.9	2079.79290	3016.66180	-0.53650	2.34970	1.79350	K562	HNRNPC
CCDC47	ENSG00000108588.9	4439.17440	5288.77630	-0.25260	2.21850	1.48870	K562	KIF1C
CCDC47	ENSG00000108588.9	4193.66760	5062.45370	-0.27160	2.28040	1.33430	K562	MAK16
CCDC47	ENSG00000108588.9	3154.21970	3820.42900	-0.27650	2.60940	1.76280	K562	METAP2
CCDC47	ENSG00000108588.9	3117.27970	4640.92540	-0.57410	18.02550	16.21990	K562	MTPAP
CCDC47	ENSG00000108588.9	3926.53940	5156.27360	-0.39310	14.52530	13.00270	K562	NSUN2
CCDC47	ENSG00000108588.9	1945.24790	5708.39520	-1.55310	3.22470	2.13320	K562	PABPN1
CCDC47	ENSG00000108588.9	3000.76860	3760.27600	-0.32550	2.45060	1.66940	K562	PCBP3
CCDC47	ENSG00000108588.9	4514.10220	5585.28290	-0.30720	2.73420	1.91840	K562	PPIG
CCDC47	ENSG00000108588.9	3562.25170	4942.58150	-0.47250	6.20750	5.43350	K562	PUS1
CCDC47	ENSG00000108588.9	3426.07980	4815.37000	-0.49110	10.11870	9.00880	K562	RBM15
CCDC47	ENSG00000108588.9	3359.40520	4196.16290	-0.32090	2.97500	2.10060	K562	RBM22
CCDC47	ENSG00000108588.9	4014.05530	3166.08620	0.34230	2.76410	1.94830	K562	RPS19
CCDC47	ENSG00000108588.9	4256.11680	5088.24040	-0.25760	3.41440	2.51370	K562	SF3A3
CCDC47	ENSG00000108588.9	2619.07440	3358.64300	-0.35880	4.35680	3.27610	K562	SF3B4
CCDC47	ENSG00000108588.9	5252.92080	4289.56530	0.29220	3.27080	2.50620	K562	SRSF1
CCDC47	ENSG00000108588.9	3077.49100	4050.97350	-0.39650	4.14890	2.82110	K562	SRSF5
CCDC47	ENSG00000108588.9	3084.43600	3658.98310	-0.24640	3.31540	2.02470	K562	SRSF7
CCDC47	ENSG00000108588.9	6102.15520	7694.78460	-0.33460	4.45320	2.58840	K562	SUCLG1
CCDC47	ENSG00000108588.9	1580.71700	3009.76360	-0.92910	9.53490	7.58880	K562	SUPV3L1
CCDC47	ENSG00000108588.9	4080.61140	2892.96590	0.49610	8.56790	7.12020	K562	SYNCRIP
CCDC47	ENSG00000108588.9	3067.53800	4341.49200	-0.50110	5.85060	4.79520	K562	TARDBP
CCDC47	ENSG00000108588.9	1822.39290	2601.43360	-0.51350	2.23080	1.39840	K562	TIAL1
CCDC47	ENSG00000108588.9	2759.34380	3233.29460	-0.22870	2.08120	1.38590	K562	U2AF2
CCDC47	ENSG00000108588.9	2514.75100	3185.12090	-0.34090	2.46850	1.51240	K562	UCHL5
CCDC47	ENSG00000108588.9	3374.93800	5467.32300	-0.69600	27.93740	25.96260	K562	UPF1
CCDC47	ENSG00000108588.9	2762.27060	5010.73640	-0.85920	5.80690	3.73930	K562	UTP18
CCDC47	ENSG00000108588.9	2425.77610	4678.18830	-0.94750	25.13180	22.63790	K562	WDR3
CCDC47	ENSG00000108588.9	6472.17420	7936.69330	-0.29430	3.25740	1.84440	K562	WRN
CCDC47	ENSG00000108588.9	5915.16830	7547.72600	-0.35160	3.96650	2.90020	K562	ZC3H8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC47 is not available on ENCORE database.

6 RBPs can affect the splicing of CCDC47 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC47	ENSG00000108588.9	chr17	-	61850136	61850326			61843271	61843554	61850771	61850930	-0.05500	0.00648	0.06516	excluded	HepG2	U2AF2
SE	CCDC47	ENSG00000108588.9	chr17	-	61829679	61829789			61829129	61829467	61830100	61830250	-0.07500	0.00000	0.00000	excluded	K562	AQR
SE	CCDC47	ENSG00000108588.9	chr17	-	61850136	61850223			61843271	61843554	61850771	61850930	0.05900	0.00078	0.03214	included	K562	FXR1
SE	CCDC47	ENSG00000108588.9	chr17	-	61850136	61850223			61843271	61843554	61850771	61850930	-0.10400	0.00042	0.03418	excluded	HepG2	HNRNPL
SE	CCDC47	ENSG00000108588.9	chr17	-	61850136	61850223			61843271	61843554	61850771	61850930	-0.05300	0.00041	0.03492	excluded	K562	HNRNPUL1
SE	CCDC47	ENSG00000108588.9	chr17	-	61850136	61850326			61843271	61843554	61850771	61850930	0.18300	0.00101	0.02007	included	K562	U2AF2
SE	CCDC47	ENSG00000108588.9	chr17	-	61842099	61842256			61841375	61841550	61843271	61843554	-0.05500	0.00063	0.02822	excluded	K562	SF3B1
A3SS	CCDC47	ENSG00000108588.9	chr17	-	61829679	61829814			61829679	61829789	61830100	61830250	0.11400	0.00000	0.00000	longer	K562	AQR
A3SS	CCDC47	ENSG00000108588.9	chr17	-	61842099	61842256			61842099	61842207	61843271	61843554	0.07600	0.00000	0.00000	longer	K562	AQR
MXE	CCDC47	ENSG00000108588.9	chr17	-	61829679	61829789	61830100	61830250	61829129	61829467	61831792	61831878	0.07400	0.00000	0.00000	1included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
CCDC47	Product_ID: A305-100A Lot_ID: 1 Source: Bethyl Labs Target Name: CCDC47-human
CCDC47	Product_ID: A305-101A Lot_ID: 1 Source: Bethyl Labs Target Name: CCDC47-human

CCDC47

General Information

Functions

Localization

Domains (AlphaFold: CCDC47)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC47 is not avaliable on ENCORE database.

32 proteins are bound to CCDC47 RNA:

eCLIP assay for CCDC47 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC47 is not available on ENCORE database.

99 RBPs can affect the gene expression of CCDC47 :

The Knockdown/knockout RNA-Seq assay for CCDC47 is not available on ENCORE database.

6 RBPs can affect the splicing of CCDC47 :

The Knockdown/knockout RNA-Seq assay for CCDC47 is not avaliable on ENCORE database.