PNN

General Information

Gene Name       : PNN
Gene ID             : ENSG00000100941.8
Essential Gene : Yes

Functions

Localization(RBPImage: PNN)

Domains (AlphaFold: PNN)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PNNENSG00000100941.8135.59113.13124.36ENCSR000AEF
HepG2PNNENSG00000100941.8223.61319.88271.75ENCSR985KAT
K562PNNENSG00000100941.875.9189.3082.60ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    PNN: Click to RBP Image Database
  • Nuclei
  • Nucleoplasm
  • Mutually Exclusive from Nucleolus
  • Speckles
  • Variable Nuclear Intensity
  • Cytoplasm
  • Cytosolic












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








    RNA Targets

    • eCLIP assay for PNN is not avaliable on ENCORE database.



    Proteins bound to RNA
    • PNN RNA is bound by 40 proteins.  







    eCLIP assay for PNN is not avaliable on ENCORE database.





    40 proteins are bound to PNN RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr143964843839648446+3'-UTR,CDS5.0955981.36782HepG2BCLAF1
    chr143964679939646864+3'-UTR,CDS,intron-Distal4.28455400.00000HepG2BCLAF1
    chr143965196539652028+3'-UTR3.417449.03403HepG2KHSRP
    chr143964844139648450+3'-UTR,CDS3.2424115.90399HepG2ZNF800
    chr143964840639648451+3'-UTR,CDS,intron-Proximal3.125686.01104HepG2WDR43
    chr143965132439651367+3'-UTR,intron-Distal5.7296850.95920HepG2CSTF2
    chr143964686439646884+3'-UTR,CDS,intron-Distal5.0541031.40592HepG2BCLAF1
    chr143964837839648409+3'-UTR,CDS4.1184716.11278K562UCHL5
    chr143965201439652094+3'-UTR5.498968.52455K562PABPC4
    chr143965183439651877+3'-UTR4.1041911.08877HepG2KHSRP
    chr143965145239651501+3'-UTR,intron-Proximal4.2999817.57585HepG2CSTF2
    chr143964709039647111+3'-UTR,CDS3.3815027.64056HepG2BCLAF1
    chr143964679939646854+3'-UTR,CDS,intron-Distal3.3575679.42814HepG2PPIG
    chr143964688239646887+3'-UTR,CDS,intron-Distal4.305629.28811HepG2GRWD1
    chr143964843239648451+3'-UTR,CDS,intron-Proximal3.2710713.78574HepG2SDAD1
    chr143964687339646889+3'-UTR,CDS,intron-Distal3.592577.89918K562DDX24
    chr143964679739646859+3'-UTR,CDS,intron-Distal3.044469.56594HepG2UCHL5
    chr143964844639648450+3'-UTR,CDS3.053406.32217HepG2NCBP2
    chr143965113139651182+3'-UTR,intron-Distal4.6252910.74754K562PUM2
    chr143964679939646870+3'-UTR,CDS,intron-Distal3.7462143.59184HepG2GRWD1
    chr143964844739648450+3'-UTR,CDS3.2601933.62610HepG2PPIG
    chr143964843039648445+3'-UTR,CDS4.8232724.34528K562UCHL5
    chr143964844739648450+3'-UTR,CDS3.7731311.52662HepG2GRWD1
    chr143965117739651232+3'-UTR,intron-Distal3.8680812.30399HepG2LSM11
    chr143965118239651233+3'-UTR,intron-Distal4.5800642.44578K562PUM2
    chr143964680239646856+3'-UTR,CDS,intron-Distal3.0291014.65553K562UCHL5
    chr143965108239651121+3'-UTR,intron-Distal4.086463.60282K562LSM11
    chr143964679639646799+3'-UTR,CDS,intron-Distal,intron-Proximal3.2745112.98691HepG2GRWD1
    chr143964842939648439+3'-UTR,CDS4.2811616.81899HepG2GRWD1
    chr143965170239651742+3'-UTR3.583765.94173HepG2CSTF2
    chr143964838639648432+3'-UTR,CDS3.1474221.05414HepG2SDAD1
    chr143964840439648426+3'-UTR,CDS3.9314811.87021K562ZNF622
    chr143964842639648449+3'-UTR,CDS3.7329511.29508K562ZNF622
    chr143965100139651073+3'-UTR,CDS,intron-Distal3.2335851.06476HepG2BCLAF1
    chr143965113839651158+3'-UTR,intron-Distal3.498564.22460K562RBM15
    chr143964842939648446+3'-UTR,CDS3.4407227.20615HepG2BUD13
    chr143965137439651430+3'-UTR,intron-Distal,intron-Proximal5.081226.37913K562CPSF6
    chr143965133339651393+3'-UTR,intron-Distal4.178743.55542HepG2TIAL1
    chr143965146339651486+3'-UTR,intron-Proximal3.065364.67590K562PUM2
    chr143964687039646882+3'-UTR,CDS,intron-Distal4.5715011.31039HepG2GRWD1
    chr143964680639646859+3'-UTR,CDS,intron-Distal3.317687.47223K562ZNF800
    chr143964841239648450+3'-UTR,CDS3.8867326.83857K562DDX24
    chr143965208339652143+3'-UTR4.2870113.45381HepG2KHSRP
    chr143964838839648450+3'-UTR,CDS3.5179817.86075HepG2TRA2A
    chr143965112339651175+3'-UTR,intron-Distal5.0962566.28822HepG2BCLAF1
    chr143964840239648421+3'-UTR,CDS3.9876819.23126HepG2GRWD1
    chr143965113539651239+3'-UTR,intron-Distal4.8308311.92688K562CPSF6
    chr143964840939648430+3'-UTR,CDS3.0524416.35991HepG2ZNF800
    chr143964844539648450+3'-UTR,CDS4.9530921.74781K562UCHL5
    chr143964837539648412+3'-UTR,CDS5.0619850.29229HepG2BCLAF1
    chr143965137139651428+3'-UTR,intron-Distal,intron-Proximal4.639625.91894K562TIA1
    chr143965111539651164+3'-UTR,intron-Distal3.023875.64315HepG2RBM15
    chr143964843939648447+3'-UTR,CDS3.9865015.25130HepG2GRWD1
    chr143965107339651123+3'-UTR,intron-Distal4.4412368.49022HepG2BCLAF1
    chr143964680039646860+3'-UTR,CDS,intron-Distal3.4232817.18068K562DDX24
    chr143965136739651446+3'-UTR,intron-Distal,intron-Proximal4.7420536.03240HepG2CSTF2
    chr143964843039648441+3'-UTR,CDS3.5305617.98393HepG2ZNF800
    chr143964679639646799+3'-UTR,CDS,intron-Distal,intron-Proximal3.0777025.81471HepG2PPIG
    chr143964843939648447+3'-UTR,CDS3.2136041.42113HepG2PPIG
    chr143964844639648450+3'-UTR,CDS5.2197676.38075HepG2BCLAF1
    chr143964689139646933+3'-UTR,intron-Distal,intron-Proximal,polyA_site4.945564.13847K562AQR
    chr143965126639651287+3'-UTR,intron-Distal5.298057.79622K562PUM2
    chr143964842139648429+3'-UTR,CDS4.1063218.87605HepG2GRWD1
    chr143965132839651425+3'-UTR,intron-Distal,intron-Proximal3.0892512.46639K562CSTF2T
    chr143964840939648430+3'-UTR,CDS4.6883122.53109K562UCHL5
    chr143964836939648404+3'-UTR,CDS3.5331613.09055K562ZNF622
    chr143964835939648402+3'-UTR,CDS3.3888917.26025HepG2GRWD1
    chr143965106239651112+3'-UTR,CDS,intron-Distal3.151448.14805HepG2LSM11
    chr143964841239648426+3'-UTR,CDS4.5796162.01300HepG2BCLAF1
    chr143964837939648430+3'-UTR,CDS3.060888.81256HepG2UCHL5
    chr143964679639646803+3'-UTR,CDS,intron-Distal,intron-Proximal3.208736.17838K562ZNF622
    chr143965184239651931+3'-UTR3.737843.24831HepG2TIA1
    chr143964833839648428+3'-UTR,CDS3.137888.47966HepG2FXR2
    chr143965187739651935+3'-UTR4.1203615.53664HepG2KHSRP
    chr143964679639646799+3'-UTR,CDS,intron-Distal,intron-Proximal3.9575028.77170HepG2BCLAF1
    chr143965133839651446+3'-UTR,intron-Distal,intron-Proximal3.2671819.41220HepG2KHSRP
    chr143964844639648451+3'-UTR,CDS,intron-Proximal3.7899826.41395HepG2BUD13
    chr143965133039651429+3'-UTR,intron-Distal,intron-Proximal4.6273157.55758K562PUM2
    chr143964835139648412+3'-UTR,CDS3.0691412.88743K562DDX24
    chr143965177739651834+3'-UTR3.650409.92231HepG2KHSRP
    chr143964842639648429+3'-UTR,CDS4.4062738.75370HepG2BCLAF1
    chr143964446539644536+5'-UTR,CDS3.067645.78893K562TRA2A
    chr143964441939644449+5'-UTR3.471167.99602HepG2NCBP2
    chr143964444939644546+5'-UTR,CDS3.1240945.30319HepG2NCBP2
    chr143964446639644499+5'-UTR,CDS4.010428.99620HepG2UCHL5
    chr143964447639644510+5'-UTR,CDS3.112597.00233HepG2TRA2A
    chr143964447739644583+5'-UTR,CDS3.5784331.67648K562ZNF622
    chr143964972839649754+CDS4.8084348.82062HepG2BCLAF1
    chr143965010539650195+CDS,intron-Distal4.16440400.00000HepG2BCLAF1
    chr143964661539646686+CDS,intron-Proximal4.2615526.90577K562DDX24
    chr143964860839648641+CDS3.541359.36208K562UCHL5
    chr143964459539644601+CDS,intron-Proximal5.9305720.15911K562AQR
    chr143964528239645291+CDS3.375756.65384K562UCHL5
    chr143964664339646654+CDS3.66789400.00000HepG2PPIG
    chr143964989939649976+CDS,intron-Proximal3.6389411.31200K562TRA2A
    chr143964980439649831+CDS3.7251311.07262K562TRA2A
    chr143964535039645353+CDS4.3971050.40443HepG2BCLAF1
    chr143964665839646677+CDS4.1031439.10084HepG2BCLAF1
    chr143964528039645292+CDS,intron-Proximal3.1459610.69253K562ZNF622
    chr143964533639645350+CDS4.3140062.20614HepG2BCLAF1
    chr143964529839645336+CDS3.4820737.71844HepG2BCLAF1
    chr143964454639644570+CDS3.9220332.45351HepG2GRWD1
    chr143964573039645738+CDS,intron-Proximal3.1627011.29954HepG2ZNF800
    chr143964705939647078+CDS3.6224525.55103HepG2BCLAF1
    chr143964533939645353+CDS3.5372820.59012HepG2GRWD1
    chr143964997639650130+CDS,intron-Distal,intron-Proximal3.4374611.09792K562TRA2A
    chr143964534339645353+CDS3.105357.36309HepG2HLTF
    chr143964852939648533+CDS3.227668.87864HepG2GRWD1
    chr143964533639645353+CDS3.169849.88649HepG2SDAD1
    chr143964533139645339+CDS3.5970213.29099HepG2GRWD1
    chr143964859239648646+CDS3.0753414.12986HepG2ZNF800
    chr143964852739648547+CDS,intron-Proximal3.959985.61068HepG2PRPF8
    chr143964663839646643+CDS3.5484382.76632HepG2PPIG
    chr143964852739648529+CDS,intron-Proximal4.0115428.63192HepG2BUD13
    chr143964665439646678+CDS3.8724162.49049HepG2PPIG
    chr143964533739645353+CDS3.0953810.67793K562UCHL5
    chr143965036539650435+CDS,intron-Distal3.0633719.79858K562UCHL5
    chr143964524439645322+CDS,intron-Proximal3.982437.70675K562AQR
    chr143964579139645799+CDS3.5024327.36279HepG2BCLAF1
    chr143964533739645353+CDS3.230309.66202K562ZNF622
    chr143964528339645334+CDS3.4264415.11958K562DDX24
    chr143964577139645791+CDS4.2496336.35752HepG2BCLAF1
    chr143964533739645353+CDS3.3761111.62478HepG2EIF3D
    chr143964574539645778+CDS3.8557716.37247K562DDX24
    chr143964573039645735+CDS,intron-Proximal3.7034052.31964HepG2PPIG
    chr143964999439650118+CDS,intron-Distal4.5607533.38113HepG2TRA2A
    chr143964852739648540+CDS,intron-Proximal3.4321132.30970HepG2PPIG
    chr143964573039645741+CDS,intron-Proximal3.059407.36535K562ZNF622
    chr143964455539644596+CDS3.334238.13987K562DDX24
    chr143964857239648617+CDS3.532589.28987K562ZNF622
    chr143964664039646657+CDS4.3050410.78619HepG2UCHL5
    chr143964983339649924+CDS,intron-Proximal5.1039735.40255HepG2TRA2A
    chr143964667939646688+CDS3.4942817.43475HepG2GRWD1
    chr143964665739646675+CDS3.798117.04407HepG2UCHL5
    chr143964704639647050+CDS3.724264.71060K562BUD13
    chr143964573039645733+CDS,intron-Proximal3.3464115.09581HepG2GRWD1
    chr143964449039644529+CDS3.7199112.75382K562UCHL5
    chr143964661739646654+CDS3.5731336.54298HepG2GRWD1
    chr143964665439646679+CDS3.5956421.53081HepG2GRWD1
    chr143964529539645313+CDS3.1393314.62731HepG2AQR
    chr143964661539646617+CDS,intron-Proximal3.3117818.32860HepG2GRWD1
    chr143965005839650105+CDS,intron-Distal4.0372172.99693HepG2BCLAF1
    chr143965006839650141+CDS,intron-Distal3.2814516.60750HepG2TAF15
    chr143965028039650365+CDS,intron-Distal3.1555425.77791K562UCHL5
    chr143964533639645393+CDS,intron-Proximal3.3373210.72310HepG2PRPF8
    chr143964854139648554+CDS3.023385.60137HepG2GRWD1
    chr143965030439650357+CDS,intron-Distal3.2142568.51046HepG2BCLAF1
    chr143964665339646677+CDS4.2758814.82807K562ZNF622
    chr143964529139645337+CDS3.2547911.16442K562UCHL5
    chr143964986339649899+CDS,intron-Proximal4.4712410.34109HepG2SRSF1
    chr143964453239644547+CDS3.000215.76838HepG2UCHL5
    chr143964704539647078+CDS3.890887.65528K562ZNF622
    chr143964971939649794+CDS3.4680518.47466HepG2GRWD1
    chr143964988839649919+CDS,intron-Proximal3.868065.20920HepG2FXR2
    chr143964577939645790+CDS3.4938559.49496HepG2PPIG
    chr143965027739650322+CDS,intron-Distal3.364744.81670K562CPSF6
    chr143964661439646653+CDS,intron-Proximal3.6479115.85918K562ZNF622
    chr143964579039645800+CDS,intron-Proximal3.3099454.98422HepG2PPIG
    chr143964852739648553+CDS,intron-Proximal4.4657118.92691K562UCHL5
    chr143964852639648540+CDS,intron-Proximal3.685834.11843HepG2WDR43
    chr143965085039650893+CDS,intron-Distal4.402293.48978HepG2SRSF9
    chr143964667739646688+CDS4.1323637.73646HepG2BCLAF1
    chr143964458339644596+CDS3.1899211.04359K562ZNF622
    chr143964452939644596+CDS4.3712529.94264K562UCHL5
    chr143964459239644596+CDS3.9493621.03183HepG2GRWD1
    chr143964573439645748+CDS4.6856965.47612HepG2BCLAF1
    chr143964852739648551+CDS,intron-Proximal3.879408.84023K562ZNF622
    chr143964974439649804+CDS3.4746011.00107K562TRA2A
    chr143964576939645779+CDS3.0607138.36867HepG2PPIG
    chr143964852739648556+CDS,intron-Proximal4.1873719.14441K562DDX24
    chr143964573339645770+CDS3.6732128.38812HepG2GRWD1
    chr143964661539646658+CDS,intron-Proximal3.8905759.24354HepG2BCLAF1
    chr143964983139649899+CDS,intron-Proximal4.2264519.73909K562TRA2A
    chr143965003139650102+CDS,intron-Distal3.341179.79713HepG2FASTKD2
    chr143964573039645735+CDS,intron-Proximal3.550499.94142HepG2EIF3D
    chr143964528139645294+CDS,intron-Proximal3.052808.71593HepG2ZNF800
    chr143964852939648550+CDS4.1425731.99298HepG2BUD13
    chr143964572939645742+CDS,intron-Proximal3.069028.47851HepG2SDAD1
    chr143964999739650068+CDS,intron-Distal3.2074811.39018HepG2TAF15
    chr143964852739648545+CDS,intron-Proximal3.166806.53921HepG2TRA2A
    chr143964852739648561+CDS,intron-Proximal3.659396.22664HepG2FXR2
    chr143964448839644502+CDS4.0966315.39226HepG2GRWD1
    chr143965030339650447+CDS,intron-Distal3.1704757.33471HepG2HNRNPK
    chr143964526739645325+CDS,intron-Proximal3.2111841.57846HepG2BUD13
    chr143964985539649889+CDS,intron-Proximal4.9294241.20316HepG2BCLAF1
    chr143964980039649863+CDS4.1142613.35896HepG2SRSF1
    chr143964975739649833+CDS4.2434727.96393HepG2TRA2A
    chr143964577039645799+CDS3.8232928.24877HepG2GRWD1
    chr143965027239650337+CDS,intron-Distal3.2813418.89517HepG2TRA2A
    chr143964458439644592+CDS4.0991528.00187HepG2GRWD1
    chr143964979439649835+CDS4.6079519.89471HepG2GRWD1
    chr143964982239649888+CDS,intron-Proximal4.2055615.15889K562ZNF622
    chr143964573539645750+CDS3.1870713.12176HepG2EIF3D
    chr143964992739649992+CDS,intron-Distal,intron-Proximal4.9196028.35922K562UCHL5
    chr143964992439649994+CDS,intron-Distal,intron-Proximal4.4265712.00537HepG2TRA2A
    chr143964531939645331+CDS3.1558813.38688HepG2GRWD1
    chr143964975439649783+CDS4.5103240.58553HepG2BCLAF1
    chr143964999239650121+CDS,intron-Distal3.5923444.32397K562UCHL5
    chr143964852739648559+CDS,intron-Proximal5.39936400.00000HepG2BCLAF1
    chr143965028239650304+CDS,intron-Distal3.7816172.12671HepG2BCLAF1
    chr143964971439649728+CDS5.1809626.75044HepG2BCLAF1
    chr143964667739646688+CDS3.9134210.90977K562ZNF622
    chr143964997639650086+CDS,intron-Distal,intron-Proximal3.8943516.13370HepG2SRSF1
    chr143964705039647088+CDS3.5612311.26527HepG2GRWD1
    chr143965000739650112+CDS,intron-Distal3.013296.76043K562TBRG4
    chr143964450239644546+CDS3.7966728.00949HepG2GRWD1
    chr143964528939645340+CDS3.056157.65086HepG2UCHL5
    chr143964998439650094+CDS,intron-Distal3.188417.59512K562SRSF7
    chr143964528639645296+CDS3.4902315.72501HepG2GRWD1
    chr143964573039645770+CDS,intron-Proximal3.0000214.27918K562UCHL5
    chr143965000839650058+CDS,intron-Distal4.1485857.67377HepG2BCLAF1
    chr143964457039644584+CDS4.4291833.96170HepG2GRWD1
    chr143965020439650253+CDS,intron-Distal3.7391269.12822HepG2BCLAF1
    chr143964529639645308+CDS3.1189315.47961HepG2GRWD1
    chr143964852739648529+CDS,intron-Proximal3.583539.85276HepG2GRWD1
    chr143964849139648540+CDS,intron-Proximal4.521564.82767HepG2SF3B4
    chr143964527539645295+CDS,intron-Proximal3.0926414.34995HepG2AQR
    chr143964449939644532+CDS3.333708.14509HepG2UCHL5
    chr143964528139645286+CDS,intron-Proximal3.6686119.68096HepG2GRWD1
    chr143964971939649822+CDS4.0815120.29460K562ZNF622
    chr143964852739648556+CDS,intron-Proximal3.4320216.24083HepG2ZNF800
    chr143964458839644595+CDS3.0841421.47640HepG2BCLAF1
    chr143965016139650220+CDS,intron-Distal4.120753.83762K562HNRNPA1
    chr143965025639650282+CDS,intron-Distal3.7434174.45671HepG2BCLAF1
    chr143965043939650473+CDS,intron-Distal3.0278810.05330HepG2GRWD1
    chr143964572939645745+CDS,intron-Proximal4.1980218.01030K562DDX24
    chr143964577839645799+CDS3.5886013.12804K562DDX24
    chr143964859639648612+CDS5.8184664.61626HepG2BCLAF1
    chr143964990039649931+CDS,intron-Proximal3.475814.51843K562WDR43
    chr143964662439646660+CDS3.2057810.64457K562UCHL5
    chr143964529439645341+CDS3.0760813.76158HepG2ZNF800
    chr143965038739650438+CDS,intron-Distal3.2321025.03722HepG2GRWD1
    chr143964529339645336+CDS3.0882113.70163HepG2SDAD1
    chr143965001339650073+CDS,intron-Distal3.927208.64311K562WDR43
    chr143964573039645734+CDS,intron-Proximal4.6268249.51917HepG2BCLAF1
    chr143964861239648646+CDS5.2640960.53584HepG2BCLAF1
    chr143964989939649957+CDS,intron-Proximal4.9742211.10002HepG2SRSF1
    chr143964976639649906+CDS,intron-Proximal5.7519453.21068K562UCHL5
    chr143964534139645353+CDS3.6427056.00348HepG2PPIG
    chr143964579139645853+CDS,intron-Proximal3.776868.23725K562AQR
    chr143964528039645293+CDS,intron-Proximal3.1470810.60693HepG2SDAD1
    chr143964574839645771+CDS4.4699458.29500HepG2BCLAF1
    chr143964661339646638+CDS,intron-Proximal3.61725400.00000HepG2PPIG
    chr143964573539645769+CDS3.4296382.10642HepG2PPIG
    chr143964853339648541+CDS3.237999.23028HepG2GRWD1
    chr143964534139645353+CDS3.0130111.31516HepG2ZNF800
    chr143964530839645319+CDS3.1805016.45493HepG2GRWD1
    chr143964534639645415+CDS,intron-Proximal4.1909215.28601K562AQR
    chr143964533439645354+CDS,intron-Proximal4.7666122.13834K562DDX24
    chr143964704639647074+CDS3.401199.87510K562DDX24
    chr143964857139648596+CDS5.9774439.38566HepG2BCLAF1
    chr143964759639647692+intron-Distal3.190355.53320HepG2ILF3
    chr143964544639645512+intron-Distal,intron-Proximal3.138553.28806K562KHSRP
    chr143964726539647342+intron-Distal3.166846.18396K562KHSRP
    chr143964464639644716+intron-Distal,intron-Proximal4.3565213.54022K562AQR
    chr143964804639648098+intron-Distal4.252553.37208HepG2ILF3
    chr143964880239648848+intron-Distal3.804299.12973HepG2KHSRP
    chr143964559039645683+intron-Distal,intron-Proximal3.029754.56635K562KHSRP
    chr143964464239644743+intron-Distal,intron-Proximal6.0972044.88864HepG2EFTUD2
    chr143964472439644862+intron-Distal3.013727.03485K562PRPF8
    chr143964465039644716+intron-Distal,intron-Proximal3.511456.63348HepG2SUPV3L1
    chr143964464339644711+intron-Distal,intron-Proximal4.378398.91093K562PRPF8
    chr143964781039647895+intron-Distal3.466916.43306HepG2ILF3
    chr143964465839644696+intron-Proximal3.692206.64170K562BUD13
    chr143964867539648766+intron-Proximal3.960867.22994K562KHSRP
    chr143964845539648469+intron-Proximal4.206534.16174HepG2PRPF8
    chr143964459739644614+intron-Proximal3.7208610.23609HepG2BUD13
    chr143964466639644675+intron-Proximal4.0170313.70821HepG2BUD13
    chr143964460139644646+intron-Proximal5.2108123.95513K562AQR
    chr143964849139648518+intron-Proximal3.223295.96622HepG2SF3A3
    chr143964699539647031+intron-Proximal4.995458.11845HepG2SF3A3
    chr143964848439648525+intron-Proximal6.4840410.62690HepG2EFTUD2
    chr143964653139646591+intron-Proximal4.489504.24670HepG2SF3B4
    chr143964461239644649+intron-Proximal4.8229732.07289HepG2PRPF8
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for PNN is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for PNN is not available on ENCORE database.

    • 109 RBPs can affect the levels of PNN.  








    The Knockdown/knockout RNA-Seq assay for PNN is not available on ENCORE database.





    109 RBPs can affect the gene expression of PNN :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    PNNENSG00000100941.47546.1779011508.61430-0.6089027.9186026.45720HepG2ACO1
    PNNENSG00000100941.48874.3318012451.88860-0.488702.663401.64370HepG2AKAP8
    PNNENSG00000100941.49338.6938011562.89330-0.308206.416605.29330HepG2AKAP8L
    PNNENSG00000100941.44766.823606481.96870-0.443404.448803.46270HepG2ASCC1
    PNNENSG00000100941.412970.7345015707.26950-0.276205.866904.93000HepG2AUH
    PNNENSG00000100941.413394.608809907.237900.435004.298603.12910HepG2BCCIP
    PNNENSG00000100941.48581.0195014729.51910-0.7795016.6842015.39470HepG2BOP1
    PNNENSG00000100941.49372.4072012289.59380-0.390906.663105.53380HepG2CALR
    PNNENSG00000100941.47055.9498010253.67960-0.539203.467402.60490HepG2CNOT7
    PNNENSG00000100941.410366.4089013522.60080-0.383504.223003.38930HepG2CPSF6
    PNNENSG00000100941.45826.091207361.79120-0.337505.794804.31960HepG2YBX3
    PNNENSG00000100941.47582.524606120.604000.308903.310902.14270HepG2CSTF2
    PNNENSG00000100941.411053.9682014792.39910-0.420308.337307.33510HepG2CELF1
    PNNENSG00000100941.413104.9472015903.39450-0.279204.101103.22710HepG2DAZAP1
    PNNENSG00000100941.46330.291707371.81510-0.219702.714001.56480HepG2DDX1
    PNNENSG00000100941.48223.215209949.79230-0.275002.682202.01330HepG2DDX21
    PNNENSG00000100941.44780.696507504.28930-0.650508.627107.57390HepG2DDX3X
    PNNENSG00000100941.44746.007606446.74930-0.441903.349902.67720HepG2DDX6
    PNNENSG00000100941.44765.247307228.37670-0.601107.995506.85070HepG2DNAJC21
    PNNENSG00000100941.49633.636706197.010100.636408.512307.50940HepG2EIF2S1
    PNNENSG00000100941.413595.2263011221.492300.276703.421902.11750HepG2EIF2S2
    PNNENSG00000100941.410598.981206848.227900.630005.013004.15590HepG2EIF4A3
    PNNENSG00000100941.410982.536906668.086300.719807.189106.10880HepG2EIF4B
    PNNENSG00000100941.413373.1476011246.194900.249802.553501.75140HepG2EWSR1
    PNNENSG00000100941.49468.512707263.596800.382403.832001.46470HepG2EXOSC5
    PNNENSG00000100941.414572.287408901.205200.7111011.213008.17360HepG2EXOSC9
    PNNENSG00000100941.49908.012104201.288601.2377042.5458039.80810HepG2FUBP3
    PNNENSG00000100941.410065.450806910.170000.542506.569605.52960HepG2FXR1
    PNNENSG00000100941.410277.823906409.882900.681108.869707.71380HepG2G3BP1
    PNNENSG00000100941.414856.422406805.321401.1263027.0343024.43430HepG2G3BP2
    PNNENSG00000100941.45964.464407439.91250-0.318902.636101.76330HepG2GEMIN5
    PNNENSG00000100941.46736.599809336.85720-0.470905.022003.64410HepG2GNB2L1
    PNNENSG00000100941.49269.5514015329.19500-0.7257010.353109.16840HepG2GPKOW
    PNNENSG00000100941.49395.1137010987.58400-0.225903.651702.54150HepG2HDGF
    PNNENSG00000100941.48795.869907297.632100.269302.619701.98880HepG2HNRNPA1
    PNNENSG00000100941.412813.3631014616.67190-0.190002.504401.60970HepG2HNRNPA2B1
    PNNENSG00000100941.411265.137008117.435700.472706.976805.91720HepG2HNRNPC
    PNNENSG00000100941.414821.004106491.318001.1910034.6634032.48240HepG2HNRNPK
    PNNENSG00000100941.412118.8722014628.90840-0.271602.163601.60050HepG2HNRNPLL
    PNNENSG00000100941.49767.4552011464.65570-0.231102.535201.84170HepG2IGF2BP1
    PNNENSG00000100941.48431.841906515.394500.371902.590601.93550HepG2IGF2BP2
    PNNENSG00000100941.410038.857906114.865100.715102.815301.82510HepG2IGF2BP3
    PNNENSG00000100941.412747.095706553.581800.9597013.3671011.06650HepG2KHSRP
    PNNENSG00000100941.49114.3289010520.47230-0.207004.547703.25100HepG2KIF1C
    PNNENSG00000100941.413277.422206912.585100.9416011.7732010.45350HepG2MAGOH
    PNNENSG00000100941.49356.893106951.177200.428703.745203.02080HepG2MATR3
    PNNENSG00000100941.411425.267407114.837700.683209.281908.16220HepG2NCBP2
    PNNENSG00000100941.413617.2759015769.88380-0.211702.208101.52610HepG2NOL12
    PNNENSG00000100941.418664.2700012971.126500.524907.741406.53430HepG2NSUN2
    PNNENSG00000100941.410555.318106335.865400.7363010.829509.42400HepG2PABPC4
    PNNENSG00000100941.49072.318407981.525800.184702.595001.77110HepG2PARN
    PNNENSG00000100941.411108.208806483.962800.776607.073406.17620HepG2PCBP1
    PNNENSG00000100941.413426.3850010794.354100.314706.641505.50200HepG2PRPF4
    PNNENSG00000100941.49887.266506598.488100.583304.512603.85110HepG2PTBP1
    PNNENSG00000100941.410394.5321015054.30680-0.534408.981107.99030HepG2PUF60
    PNNENSG00000100941.413572.5371015981.48160-0.235703.463202.81460HepG2PUM1
    PNNENSG00000100941.412271.0057015969.39150-0.380106.017305.04130HepG2PUM2
    PNNENSG00000100941.48783.7989011722.30680-0.4163013.6903012.49820HepG2PUS1
    PNNENSG00000100941.411872.774207144.591600.7326010.956009.83280HepG2QKI
    PNNENSG00000100941.412521.9779015635.85430-0.320404.388103.33810HepG2RBM15
    PNNENSG00000100941.410500.7193015073.38080-0.5215011.7971010.88140HepG2RBM22
    PNNENSG00000100941.414636.313806484.831301.1743014.5555013.07440HepG2RBM25
    PNNENSG00000100941.411609.935807342.807700.660907.977007.14250HepG2NELFE
    PNNENSG00000100941.413014.189306840.053700.9279015.9175014.63860HepG2RECQL
    PNNENSG00000100941.410066.0992012542.28070-0.317303.604202.84200HepG2RPLP0
    PNNENSG00000100941.412938.581309691.568200.416803.117201.72930HepG2SART3
    PNNENSG00000100941.414674.579006868.418901.0952016.5253015.26470HepG2SF3B4
    PNNENSG00000100941.411572.843707169.737800.690707.780807.08070HepG2SRSF1
    PNNENSG00000100941.410875.5717014864.73830-0.4508010.660809.53940HepG2SRSF5
    PNNENSG00000100941.49664.053305833.476500.728207.959007.10920HepG2SRSF9
    PNNENSG00000100941.417777.3051014781.191400.266204.224903.62000HepG2SSB
    PNNENSG00000100941.413906.3545016904.61500-0.281704.869004.08500HepG2SUCLG1
    PNNENSG00000100941.47442.4947010086.69070-0.438606.451805.05260HepG2SUPT6H
    PNNENSG00000100941.415018.967506446.092201.2202023.8889022.46480HepG2TAF15
    PNNENSG00000100941.44916.239906499.96310-0.402903.190002.12430HepG2TFIP11
    PNNENSG00000100941.410037.143405921.327400.761306.106104.87050HepG2TIA1
    PNNENSG00000100941.49916.778407834.810500.339902.182301.72760HepG2TIAL1
    PNNENSG00000100941.415193.9907012777.326900.249802.144701.58490HepG2U2AF1
    PNNENSG00000100941.410691.914905728.754000.9001010.901909.40670HepG2UCHL5
    PNNENSG00000100941.412704.1504015045.69720-0.244105.238104.32580HepG2UPF1
    PNNENSG00000100941.413282.573308881.041400.580605.523104.07420HepG2UPF2
    PNNENSG00000100941.413012.0797015465.02700-0.249204.213802.95360HepG2UTP18
    PNNENSG00000100941.414267.796509545.709600.579708.686607.41820HepG2XRN2
    PNNENSG00000100941.414515.9051010652.812000.4463018.4870017.02100HepG2ZC3H8
    PNNENSG00000100941.410816.1189016547.41580-0.6134039.3006037.86190HepG2ZNF622
    PNNENSG00000100941.44523.165905151.16090-0.187602.585701.66130K562BCLAF1
    PNNENSG00000100941.46787.304208695.16680-0.357403.484802.50560K562BOP1
    PNNENSG00000100941.48416.0911010592.95580-0.331904.454702.91900K562CCDC124
    PNNENSG00000100941.44579.701905920.23650-0.370403.949802.40870K562CIRBP
    PNNENSG00000100941.49442.7998014844.78120-0.652704.524403.12360K562CNOT7
    PNNENSG00000100941.48590.2457010440.48690-0.281404.875903.38130K562CPEB4
    PNNENSG00000100941.47125.753209245.34490-0.375705.444704.35220K562CPSF6
    PNNENSG00000100941.43059.155804090.14640-0.419005.610604.05970K562DDX3X
    PNNENSG00000100941.47992.1469010802.46060-0.4347011.8029010.55890K562DDX47
    PNNENSG00000100941.45204.547906994.09300-0.426407.204806.12410K562EIF2S2
    PNNENSG00000100941.43544.080204703.27670-0.408303.051301.96420K562EIF3D
    PNNENSG00000100941.411045.4514012795.89290-0.212202.943801.97560K562EIF4G2
    PNNENSG00000100941.45830.639407847.74990-0.428602.517501.70950K562FIP1L1
    PNNENSG00000100941.47340.475809407.13630-0.357903.760402.75910K562FMR1
    PNNENSG00000100941.46573.367405281.082900.315703.397001.77680K562G3BP1
    PNNENSG00000100941.46731.211805155.570600.384602.533801.86210K562G3BP2
    PNNENSG00000100941.45422.176808826.93930-0.7030014.3393012.49460K562GPKOW
    PNNENSG00000100941.46462.163509320.92340-0.528507.140505.91570K562GRSF1
    PNNENSG00000100941.47086.902605647.451000.327503.959102.67590K562HNRNPA1
    PNNENSG00000100941.43531.444104809.88580-0.445704.031403.32730K562HNRNPC
    PNNENSG00000100941.47752.894905517.056500.490705.513403.70910K562HNRNPK
    PNNENSG00000100941.47147.9655010640.67590-0.574003.722402.80460K562HSPD1
    PNNENSG00000100941.44700.514305793.59380-0.301603.331902.30740K562MATR3
    PNNENSG00000100941.46289.894408616.11570-0.454006.709605.31240K562METAP2
    PNNENSG00000100941.410114.148407685.936100.396002.645201.78620K562NAA15
    PNNENSG00000100941.43059.826404327.09670-0.499902.807701.50100K562NONO
    PNNENSG00000100941.46363.375905165.359400.300802.975601.96240K562PCBP2
    PNNENSG00000100941.44789.395306364.78130-0.410303.812902.83640K562PCBP3
    PNNENSG00000100941.43683.179004882.09440-0.406505.967804.79490K562POLR2G
    PNNENSG00000100941.46290.887108907.93270-0.501803.301902.39150K562PPIG
    PNNENSG00000100941.410614.3629013961.29980-0.395405.421104.28090K562PUF60
    PNNENSG00000100941.411682.8081014550.09630-0.316605.834804.42570K562PUM2
    PNNENSG00000100941.412347.503909147.085600.432705.256504.53910K562PUS1
    PNNENSG00000100941.410363.255508912.424300.217502.725902.13660K562RBM15
    PNNENSG00000100941.46336.563004891.908500.373204.969903.11280K562RBM25
    PNNENSG00000100941.42838.601304354.10940-0.617206.934305.62940K562RPS19
    PNNENSG00000100941.44191.164206745.85180-0.686604.159602.90420K562RPS3
    PNNENSG00000100941.47676.461008457.12300-0.139702.215801.36980K562SRPK2
    PNNENSG00000100941.47499.594106428.329800.222302.687101.54040K562SRSF7
    PNNENSG00000100941.47463.032705060.946500.560302.950501.42020K562TAF15
    PNNENSG00000100941.44510.633305596.03650-0.311102.635301.94300K562TARDBP
    PNNENSG00000100941.46777.469404999.366700.438903.948902.59530K562U2AF1
    PNNENSG00000100941.46806.243205162.621900.398706.269905.06790K562U2AF2
    PNNENSG00000100941.43451.613604380.28890-0.343802.823401.79260K562UCHL5
    PNNENSG00000100941.47147.130408870.67470-0.311707.179906.08590K562UPF1
    PNNENSG00000100941.47367.111005994.528300.297403.239201.41120K562UPF2
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for PNN is not available on ENCORE database.





    6 RBPs can affect the splicing of PNN :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEPNNENSG00000100941.4chr14+396468003964689139646615396466883964704439647120-0.089000.000000.00000excludedHepG2U2AF2
    SEPNNENSG00000100941.4chr14+396467793964689139646615396466883964704439647120-0.053000.000000.00002excludedK562AQR
    A3SSPNNENSG00000100941.4chr14+3964570139645799396457303964579939645281396453530.058000.000000.00000longerK562AQR
    A3SSPNNENSG00000100941.4chr14+3964827839648450396482943964845039646981396471200.051000.000000.00000longerK562AQR
    A3SSPNNENSG00000100941.4chr14+396485273964866639648574396486663964829439648450-0.065000.000000.00000shorterK562AQR
    MXEPNNENSG00000100941.4chr14+3964679639646891396470443964712039646615396466883964829439648450-0.094000.001970.040082includedHepG2SRSF1
    MXEPNNENSG00000100941.4chr14+39646796396468913964704439647120396466153964668839648294396484500.109000.000180.011461includedK562LIN28B
    MXEPNNENSG00000100941.4chr14+39648267396484503964850239648666396469813964712039649706396498800.068000.000000.000001includedK562AQR
    MXEPNNENSG00000100941.4chr14+39648278396484503964850239648666396469813964712039649706396498800.065000.000000.000001includedK562AQR
    MXEPNNENSG00000100941.4chr14+3964573039645799396466153964668839645281396453533964704439647120-0.059000.000000.000002includedK562AQR
    MXEPNNENSG00000100941.4chr14+3964679639646891396470443964712039646615396466883964829439648450-0.088000.001940.066692includedHepG2BCCIP
    MXEPNNENSG00000100941.4chr14+39646796396468913964704439647120396466153964668839648294396484500.106000.000000.000021includedHepG2U2AF2
    MXEPNNENSG00000100941.4chr14+39646615396466883964704439647120396457303964579939648294396484500.283000.000020.000311includedHepG2U2AF2
    MXEPNNENSG00000100941.4chr14+39646615396466883964680039646891396457303964579939647044396471200.195000.003420.022271includedHepG2U2AF2
    MXEPNNENSG00000100941.4chr14+3964573039645799396466153964668839645281396453533964704439647120-0.066000.000000.000002includedHepG2U2AF2
    MXEPNNENSG00000100941.4chr14+3964829439648450396485273964866639647044396471203964970639652422-0.112000.000030.003062includedK562PPIL4

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for PNN is not avaliable on ENCORE database.